Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 7.4e-206 720.3 366 100.0
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.7e-194 682.6 351 98.9
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.5e-193 679.5 351 98.0
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 5.2e-191 671.0 352 97.4
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 1.1e-185 653.3 351 94.3
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.8e-175 619.4 353 88.1
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.0e-170 603.6 353 84.7
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.3e-170 603.2 353 85.0
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 4.4e-166 588.2 354 83.1
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 2.2e-165 585.9 354 81.9
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 2.9e-165 585.5 354 81.9
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 1.9e-161 572.8 354 81.1
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 2.5e-161 572.4 353 81.9
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 9.5e-161 570.5 354 81.1
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.6e-160 569.7 351 79.2
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.6e-160 569.7 351 81.2
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 6.2e-160 567.8 351 78.9
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 6.2e-160 567.8 353 80.5
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 8.0e-160 567.4 353 79.3
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.4e-159 566.6 356 80.3
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 1.4e-159 566.6 353 78.8
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 1.8e-159 566.2 352 81.2
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.1e-159 565.5 354 79.7
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.1e-159 565.5 354 80.2
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 4.0e-159 565.1 353 80.2
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 5.2e-159 564.7 351 80.6
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 6.8e-159 564.3 353 78.8
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 8.9e-159 563.9 351 80.6
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 2.0e-158 562.8 353 77.9
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 3.4e-158 562.0 353 79.0
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 4.4e-158 561.6 353 79.3
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 4.4e-158 561.6 354 78.8
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 1.7e-157 559.7 353 81.3
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 6.4e-157 557.8 357 79.0
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 8.3e-157 557.4 351 78.9
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.4e-156 556.6 354 78.2
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.9e-156 556.2 354 79.4
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 3.2e-156 555.4 354 78.5
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 3.2e-156 555.4 377 74.3
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 5.4e-156 554.7 351 77.5
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.2e-155 553.5 351 77.8
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.6e-155 553.1 353 77.6
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 2.0e-155 552.7 354 76.3
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 2.0e-155 552.7 354 76.3
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 2.0e-155 552.7 351 77.8
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 3.5e-155 552.0 352 79.0
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 3.5e-155 552.0 353 78.8
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 6.0e-155 551.2 352 78.1
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.0e-154 550.4 351 78.1
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 6.6e-154 547.7 354 78.2
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.9e-153 546.2 352 78.7
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 3.3e-153 545.4 351 77.5
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 4.3e-153 545.0 351 76.9
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 5.6e-153 544.7 354 77.1
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 9.5e-153 543.9 365 76.7
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 3.6e-152 542.0 351 76.4
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 6.2e-152 541.2 351 76.6
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 2.6e-150 535.8 352 76.4
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 4.4e-150 535.0 355 77.2
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 5.8e-150 534.6 355 76.3
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 5.8e-150 534.6 373 73.7
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 9.8e-150 533.9 353 76.2
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 2.2e-149 532.7 372 72.8
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 2.2e-149 532.7 355 76.9
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 4.9e-149 531.6 355 75.8
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 4.9e-149 531.6 385 71.2
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 6.4e-149 531.2 355 74.9
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 6.4e-149 531.2 352 76.1
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 8.3e-149 530.8 347 77.2
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.1e-148 530.4 352 74.7
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.1e-148 530.4 336 78.9
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.1e-148 530.4 356 73.6
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 1.9e-148 529.6 355 74.6
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.9e-148 529.6 356 75.6
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.9e-148 529.6 356 74.2
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 2.4e-148 529.3 355 75.8
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 3.2e-148 528.9 355 75.5
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 4.1e-148 528.5 356 74.2
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 7.1e-148 527.7 355 75.5
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 7.1e-148 527.7 355 75.5
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 9.2e-148 527.3 352 75.9
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 9.2e-148 527.3 355 75.8
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 9.2e-148 527.3 355 75.2
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 9.2e-148 527.3 354 75.7
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 9.2e-148 527.3 336 78.3
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 9.2e-148 527.3 355 75.2
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.2e-147 526.9 355 74.1
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 2.1e-147 526.2 354 73.2
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 6.0e-147 524.6 335 77.9
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 7.8e-147 524.2 351 74.9
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.0e-146 523.9 355 74.9
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.3e-146 523.5 351 76.1
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 3.0e-146 522.3 354 74.9
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 3.9e-146 521.9 354 74.9
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 5.1e-146 521.5 320 81.6
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 5.1e-146 521.5 352 74.7
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 6.6e-146 521.2 355 74.1
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 5.6e-145 518.1 335 77.0
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 7.3e-145 517.7 355 74.1
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 1.6e-144 516.5 352 73.0
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 1.6e-144 516.5 354 73.4
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.3e-141 506.9 402 67.2
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.7e-141 506.5 355 74.1
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 6.4e-141 504.6 407 66.6
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 1.1e-140 503.8 358 72.9
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.1e-140 503.8 451 60.8
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 1.0e-138 497.3 368 69.3
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.7e-138 496.5 410 65.9
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 2.3e-138 496.1 322 77.3
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 6.6e-138 494.6 316 79.1
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 8.6e-138 494.2 327 77.4
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.5e-137 493.4 504 55.4
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.2e-136 490.3 355 72.1
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 4.7e-136 488.4 357 69.5
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 5.6e-129 464.9 309 75.7
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.4e-119 433.0 265 80.4
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.3e-117 427.2 343 66.2
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 6.9e-111 404.8 286 72.7
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 2.6e-110 402.9 243 81.1
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 8.2e-104 381.3 353 56.1
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 5.9e-102 375.2 358 50.6
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 4.3e-97 359.0 313 56.5
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.4e-95 354.0 232 78.9
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.1e-92 344.4 297 55.6
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.6e-83 313.9 294 53.1
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 7.7e-70 268.5 244 52.0
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 7.2e-68 261.9 293 47.4
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 4.4e-65 252.7 179 72.6
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 5.5e-60 235.7 233 56.7
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 9.5e-60 235.0 205 63.9
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.6e-59 234.2 307 41.4
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.5e-57 227.6 171 70.8
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 3.4e-57 226.5 288 49.7
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 2.5e-52 210.3 332 38.6
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.1e-43 180.6 99 89.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.3e-32 144.8 80 87.5
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.2e-32 144.1 82 86.6
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.2e-27 128.3 130 56.9
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 7.3e-20 102.4 65 70.8
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 1.2e-17 95.1 75 62.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 5.1e-13 79.7 60 68.3
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.9e-07 61.2 40 75.0
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.9e-07 61.2 44 65.9
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 2.4e-07 60.8 42 59.5
arahy.Tifrunner.gnm1.ann1.1Z9DBD Arachis hypogaea HOM05D000380 ORTHO05D002061 1.2e-06 58.5 36 72.2
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.2e-06 58.5 42 73.8
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 1.2e-06 58.5 32 81.2


User provided reference genes

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