Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.4e-269 932.6 547 100.0
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 9.6e-226 786.9 483 97.5
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.3e-225 786.6 488 96.7
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.1e-204 716.1 622 72.5
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.5e-197 693.3 629 71.2
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 5.2e-187 658.3 488 84.2
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 1.9e-117 427.2 492 61.8
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 7.7e-90 335.5 510 49.0
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 1.3e-84 318.2 490 49.2
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 4.1e-83 313.2 540 45.9
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 3.6e-79 300.1 528 43.2
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 5.3e-75 286.2 535 46.4
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 7.0e-75 285.8 529 42.5
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.6e-74 284.6 436 45.0
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 2.0e-74 284.3 478 40.4
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 4.2e-72 276.6 482 47.1
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 9.4e-72 275.4 507 43.0
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 6.8e-70 269.2 522 44.6
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 1.2e-66 258.5 517 40.2
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 2.3e-65 254.2 560 42.9
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 2.3e-65 254.2 509 43.2
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 5.0e-65 253.1 489 44.0
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 5.0e-65 253.1 528 40.3
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 3.2e-64 250.4 488 41.2
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.2e-64 250.4 536 43.3
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 2.1e-63 247.7 539 39.7
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.1e-63 247.7 536 42.0
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.7e-63 246.5 536 42.0
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 2.3e-62 244.2 496 42.1
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 5.2e-62 243.0 524 41.0
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 6.8e-62 242.7 500 42.6
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 1.2e-61 241.9 461 44.9
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 4.4e-61 240.0 472 48.9
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 7.5e-61 239.2 485 37.5
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 1.7e-60 238.0 542 40.4
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 2.2e-60 237.7 552 39.1
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 3.7e-60 236.9 488 43.2
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 8.3e-60 235.7 488 43.2
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 1.1e-59 235.3 502 44.8
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 1.4e-59 235.0 458 44.8
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.8e-59 234.6 485 37.1
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 1.6e-58 231.5 484 44.0
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.0e-58 231.1 560 40.0
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 2.0e-58 231.1 453 42.2
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 7.8e-58 229.2 473 40.4
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 2.3e-57 227.6 498 42.4
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.9e-57 227.3 425 42.8
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.1e-56 225.3 455 43.3
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 2.5e-56 224.2 405 44.2
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 5.6e-56 223.0 512 38.1
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 3.6e-55 220.3 504 41.5
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 1.4e-54 218.4 487 38.8
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 6.8e-54 216.1 495 41.0
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 2.0e-53 214.5 546 37.4
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 2.0e-53 214.5 498 42.2
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.6e-53 214.2 487 40.9
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 3.4e-53 213.8 497 41.9
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 4.4e-53 213.4 551 41.9
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 6.4e-52 209.5 508 38.6
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 3.2e-51 207.2 306 50.7
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 2.7e-50 204.1 384 40.9
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.3e-49 201.8 531 45.4
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.9e-48 198.0 521 40.9
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 3.3e-48 197.2 492 37.8
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 9.5e-48 195.7 384 44.5
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 6.2e-47 193.0 447 37.6
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 1.4e-46 191.8 384 45.1
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 4.0e-46 190.3 416 38.5
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 2.2e-44 184.5 542 35.2
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 3.7e-44 183.7 309 49.5
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 7.0e-43 179.5 552 34.4
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.6e-42 178.3 454 36.6
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.6e-42 178.3 245 49.4
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 6.0e-42 176.4 628 32.0
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.0e-41 175.6 340 45.9
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.3e-40 170.2 501 34.1
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 4.3e-40 170.2 535 32.9
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 5.6e-40 169.9 466 39.1
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 7.3e-40 169.5 322 45.3
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.5e-40 169.1 402 40.0
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 1.2e-39 168.7 481 34.3
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 2.8e-39 167.5 305 39.3
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 6.2e-39 166.4 511 34.1
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 1.1e-38 165.6 505 34.1
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 3.1e-38 164.1 306 52.3
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 4.0e-38 163.7 519 33.7
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 4.0e-38 163.7 519 33.7
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 4.0e-38 163.7 478 36.2
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 4.4e-37 160.2 456 41.9
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.1e-35 155.6 211 45.5
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 1.4e-35 155.2 293 38.9
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 1.9e-35 154.8 476 33.0
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 3.2e-35 154.1 292 45.5
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 4.1e-35 153.7 585 31.1
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 1.6e-34 151.8 505 34.7
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 1.6e-34 151.8 531 32.2
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 6.0e-34 149.8 281 39.1
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 5.1e-33 146.7 523 33.3
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 1.1e-32 145.6 437 35.5
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 1.9e-32 144.8 546 32.1
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 7.3e-32 142.9 609 33.5
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 9.5e-32 142.5 306 41.8
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 9.5e-32 142.5 302 35.1
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 1.2e-31 142.1 191 48.7
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 2.1e-31 141.4 300 42.3
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 1.1e-30 139.0 615 28.6
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.1e-30 139.0 334 40.1
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 5.2e-30 136.7 362 44.8
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 6.8e-30 136.3 426 33.6
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.9e-30 136.0 452 34.1
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 7.6e-29 132.9 212 45.8
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 3.8e-28 130.6 210 41.4
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 4.9e-28 130.2 610 30.7
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 1.1e-27 129.0 392 46.2
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 1.4e-27 128.6 86 68.6
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 3.2e-27 127.5 489 34.6
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 3.2e-27 127.5 283 36.7
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.2e-26 125.6 269 39.0
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.6e-26 125.2 191 45.5
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 2.1e-26 124.8 293 34.8
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.1e-26 124.8 492 29.3
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.0e-25 122.5 486 32.7
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 1.0e-25 122.5 481 38.5
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.3e-25 121.3 259 34.7
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.0e-25 120.9 498 28.7
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 5.6e-24 116.7 494 36.6
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 5.6e-24 116.7 498 27.7
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.6e-23 115.2 482 35.9
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.6e-23 115.2 447 28.6
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 2.8e-23 114.4 196 36.2
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 6.2e-23 113.2 242 32.2
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 1.1e-22 112.5 496 33.7
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.6e-21 106.3 196 38.8
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.6e-18 98.6 174 38.5
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 2.1e-18 98.2 134 35.8
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 7.8e-18 96.3 164 39.0
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.0e-17 95.9 172 32.6
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.3e-17 95.5 163 35.6
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.7e-17 95.1 270 30.4
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 3.9e-17 94.0 376 30.6
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.9e-16 91.7 172 40.7
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 4.3e-16 90.5 64 57.8
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.3e-16 90.5 112 41.1
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 5.6e-16 90.1 128 48.4
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 2.1e-15 88.2 62 56.5
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 2.8e-15 87.8 498 36.7
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 1.1e-14 85.9 182 31.9
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 4.0e-14 84.0 191 35.6
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.4e-13 80.9 411 30.7
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 1.3e-12 79.0 134 41.0
Lj2A839T58 Lonicera japonica HOM05D003229 ORTHO05D003835 8.4e-12 76.3 207 32.9
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 1.9e-11 75.1 229 28.4
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 1.9e-11 75.1 62 51.6
CSS0028132 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.4e-11 74.7 135 38.5
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 5.4e-11 73.6 197 28.9
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 1.2e-10 72.4 97 38.1
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 1.6e-10 72.0 139 50.4
COL.COLO4_15223 Corchorus olitorius HOM05D003229 ORTHO05D003835 2.1e-10 71.6 160 42.5
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.5e-10 70.9 224 26.3
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.5e-10 70.9 62 48.4
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.0e-10 70.1 309 23.9
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 3.9e-09 67.4 191 31.9
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 5.1e-09 67.0 193 30.6
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 1.5e-08 65.5 46 50.0
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 1.9e-08 65.1 64 42.2
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 2.5e-08 64.7 203 30.0
COL.COLO4_15222 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.6e-07 62.0 203 29.6
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 2.1e-07 61.6 91 38.5
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 2.1e-07 61.6 91 38.5
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 2.1e-07 61.6 91 38.5
Haze_22516 Corylus avellana HOM05D003229 ORTHO05D017800 2.1e-07 61.6 123 35.8
Gohir.A04G056400 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.1e-06 59.3 148 29.7
Ah.12g059520 Amaranthus hybridus HOM05D003229 ORTHO05D003835 6.9e-06 56.6 69 46.4


User provided reference genes

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