Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 0.0e+00 1107.8 563 100.0
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 0.0e+00 1091.3 563 98.4
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 0.0e+00 1081.2 560 98.0
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 7.7e-311 1069.7 560 97.7
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 2.5e-309 1064.7 547 98.7
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 4.8e-305 1050.4 565 94.9
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 5.9e-271 937.2 565 83.0
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.9e-269 932.2 565 82.8
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 3.6e-260 901.4 565 81.4
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.2e-259 897.5 565 81.1
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.0e-254 880.9 565 79.6
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 1.7e-249 865.9 569 78.4
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 2.9e-249 865.1 565 77.9
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 1.9e-248 862.4 572 77.3
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 4.7e-244 847.8 570 75.3
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 1.6e-239 832.8 545 77.4
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 1.2e-236 823.2 571 74.3
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 3.1e-235 818.5 568 73.9
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.1e-232 810.1 569 72.9
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 3.2e-232 808.5 570 73.2
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 4.2e-232 808.1 594 70.5
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 7.1e-232 807.4 570 71.9
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 9.3e-232 807.0 570 73.3
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.5e-229 799.7 570 71.8
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 1.9e-229 799.3 565 73.1
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 2.5e-229 798.9 568 72.4
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 3.3e-229 798.5 570 72.8
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 2.1e-228 795.8 571 71.5
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 2.0e-226 789.3 561 72.2
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 2.6e-226 788.9 564 72.2
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 2.9e-225 785.4 571 71.1
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.4e-224 782.3 566 71.6
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.2e-223 780.0 566 71.6
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 2.7e-223 778.9 573 70.9
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 7.9e-223 777.3 570 70.9
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.8e-222 776.2 566 71.4
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 2.3e-222 775.8 570 69.5
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 5.1e-222 774.6 570 69.6
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 8.7e-222 773.9 573 70.3
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 4.3e-221 771.5 569 70.1
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 5.6e-221 771.2 573 70.5
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 2.8e-220 768.8 570 68.9
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 4.8e-220 768.1 573 70.0
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.8e-220 768.1 566 70.3
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 6.2e-220 767.7 570 70.2
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 6.2e-220 767.7 566 70.5
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 8.1e-220 767.3 570 68.8
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 2.0e-218 762.7 570 69.8
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.6e-218 762.3 499 76.8
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 5.8e-218 761.1 556 69.8
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 2.2e-217 759.2 501 76.2
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 2.9e-217 758.8 567 69.3
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 5.5e-216 754.6 428 86.9
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 5.5e-216 754.6 505 74.7
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 9.3e-216 753.8 568 68.5
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 2.1e-215 752.7 574 68.6
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 2.1e-215 752.7 574 67.8
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 3.5e-215 751.9 568 68.7
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 2.3e-214 749.2 570 67.2
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 3.0e-214 748.8 568 68.5
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 2.5e-213 745.7 572 68.9
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 5.6e-213 744.6 570 68.2
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 2.4e-211 739.2 568 67.6
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 5.8e-210 734.6 570 67.5
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 7.6e-210 734.2 568 66.5
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.0e-209 733.8 556 67.6
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 1.3e-209 733.4 572 67.0
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 2.2e-209 732.6 565 66.5
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.2e-208 728.8 504 73.0
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 7.1e-208 727.6 566 68.2
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.2e-207 726.9 504 72.6
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.0e-206 723.8 572 65.0
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 1.0e-206 723.8 570 66.0
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.5e-205 719.9 504 72.2
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 3.3e-205 718.8 574 66.4
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 5.7e-205 718.0 507 70.4
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.6e-204 716.5 567 67.2
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 4.8e-204 714.9 571 66.4
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 6.3e-204 714.5 501 71.3
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 2.4e-203 712.6 572 64.9
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 5.3e-203 711.4 569 65.4
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.2e-202 710.3 502 71.5
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 4.5e-202 708.4 576 65.1
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 1.0e-201 707.2 580 64.0
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 1.3e-201 706.8 567 66.8
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 5.0e-201 704.9 579 64.6
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.1e-199 699.5 572 65.2
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 4.6e-199 698.4 567 64.9
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.0e-198 697.2 576 63.7
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.5e-197 692.6 574 64.5
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 4.3e-197 691.8 559 65.1
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 5.7e-197 691.4 581 62.8
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 2.8e-196 689.1 547 65.4
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 3.7e-196 688.7 571 64.8
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 6.3e-196 688.0 573 64.7
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 8.2e-196 687.6 573 64.4
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.8e-195 686.4 574 63.9
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 4.1e-195 685.3 570 65.1
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 9.1e-195 684.1 578 64.0
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.2e-194 683.7 583 62.3
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 2.2e-193 679.5 574 64.6
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 3.8e-193 678.7 572 64.0
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 6.5e-193 677.9 508 68.9
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 8.5e-193 677.6 513 66.7
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 2.5e-192 676.0 520 68.1
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 5.5e-192 674.9 567 62.6
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 3.6e-191 672.2 574 60.5
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 8.8e-190 667.5 502 65.9
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.5e-186 655.6 555 63.1
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 5.9e-186 654.8 423 76.4
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 3.2e-184 649.0 552 61.6
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 4.2e-176 622.1 580 57.9
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 5.2e-174 615.1 514 61.9
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.6e-173 612.8 509 61.9
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 5.3e-171 605.1 570 54.9
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 3.8e-169 599.0 351 82.3
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 7.2e-168 594.7 521 60.7
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 5.7e-165 585.1 501 64.9
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 5.5e-160 568.5 444 64.2
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 3.0e-158 562.8 384 70.6
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 2.5e-144 516.5 512 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.8e-142 510.4 528 51.1
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.3e-140 504.2 548 53.1
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 7.3e-136 488.4 478 56.3
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 7.1e-131 471.9 529 49.1
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 6.4e-124 448.7 258 81.8
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 2.4e-123 446.8 535 44.7
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 4.0e-118 429.5 447 50.1
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 8.7e-113 411.8 480 53.3
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 7.3e-112 408.7 497 49.3
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.1e-106 390.6 516 46.5
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 3.8e-92 343.2 471 41.8
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.1e-91 341.7 300 63.3
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 4.6e-90 336.3 306 53.6
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 6.9e-86 322.4 382 51.0
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 1.6e-74 284.6 453 38.2
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 1.4e-70 271.6 328 42.4
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 1.5e-69 268.1 243 60.5
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 4.2e-67 260.0 569 35.1
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 3.0e-41 174.1 245 45.7
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 8.3e-39 166.0 167 56.9
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 7.0e-30 136.3 635 21.4
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.4e-17 95.5 92 62.0
RcHm_v2.0_Chr7g0205881 Rosa chinensis HOM05D005019 ORTHO05D347162 2.9e-15 87.8 78 62.8
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.2e-10 72.4 54 70.4
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 1.4e-09 68.9 63 55.6


User provided reference genes

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