Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.3e-117 424.9 246 100.0
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.3e-108 396.7 246 92.3
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.2e-108 396.0 246 93.1
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.8e-108 394.8 246 91.9
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.3e-108 394.4 246 93.5
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 8.8e-102 374.0 246 89.4
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 7.5e-77 291.2 220 74.1
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.4e-75 287.0 213 72.8
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.3e-64 248.8 217 63.1
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.3e-62 243.0 216 62.0
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.5e-61 240.4 207 66.7
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 6.4e-60 235.0 226 60.2
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 3.2e-59 232.6 210 61.4
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.5e-58 229.2 212 60.8
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 3.5e-58 229.2 215 61.9
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.7e-57 226.9 217 60.8
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.7e-57 226.9 230 60.9
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 3.0e-57 226.1 250 56.4
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 8.6e-57 224.6 224 60.3
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.1e-56 224.2 205 62.0
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.5e-56 223.8 224 62.1
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 2.5e-56 223.0 219 60.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 2.5e-56 223.0 230 59.1
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.3e-56 222.6 224 57.6
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 7.3e-56 221.5 215 61.9
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 9.5e-56 221.1 217 62.2
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.6e-55 220.3 218 57.8
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.1e-55 219.9 223 61.9
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 3.6e-55 219.2 208 60.1
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 4.7e-55 218.8 217 59.4
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 8.0e-55 218.0 218 57.8
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 1.0e-54 217.6 216 61.1
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.8e-54 216.9 204 63.2
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 5.2e-54 215.3 213 60.1
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.5e-53 213.8 208 63.9
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 2.0e-53 213.4 220 58.2
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.6e-53 213.0 218 56.4
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 3.4e-53 212.6 207 62.3
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.4e-53 212.2 223 59.2
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 5.8e-53 211.8 217 59.0
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.7e-52 210.3 238 52.5
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 2.9e-52 209.5 267 49.4
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.4e-51 207.2 214 56.5
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 4.1e-51 205.7 220 55.5
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 5.4e-51 205.3 224 55.4
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 7.0e-51 204.9 202 57.9
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.2e-50 204.1 195 60.0
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.0e-49 201.1 202 56.9
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.0e-49 201.1 221 53.4
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.7e-49 200.3 213 57.7
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 3.0e-49 199.5 220 52.7
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 5.0e-49 198.7 206 56.8
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 2.5e-48 196.4 226 54.4
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 2.1e-47 193.4 257 48.6
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 6.2e-47 191.8 254 49.2
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 6.2e-47 191.8 258 49.2
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.4e-46 190.7 187 59.9
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 3.1e-46 189.5 257 48.2
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.0e-46 189.1 205 59.5
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 6.8e-46 188.3 264 49.2
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 6.8e-46 188.3 207 56.0
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 8.9e-46 188.0 247 47.8
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 2.0e-45 186.8 202 53.5
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 2.6e-45 186.4 172 60.5
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 3.4e-45 186.0 204 56.9
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 4.4e-45 185.7 170 61.8
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 7.5e-45 184.9 149 67.1
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 1.7e-44 183.7 245 47.3
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.2e-44 183.3 220 49.1
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 4.9e-44 182.2 211 54.5
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 4.9e-44 182.2 210 53.3
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 8.3e-44 181.4 219 52.5
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 8.3e-44 181.4 227 51.1
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.9e-43 180.3 226 50.9
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 4.1e-43 179.1 231 50.6
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 4.1e-43 179.1 231 48.9
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 5.4e-43 178.7 214 50.9
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 7.1e-43 178.3 248 48.8
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 9.2e-43 177.9 257 47.9
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.2e-42 177.6 148 64.9
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 1.6e-42 177.2 227 49.3
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 2.1e-42 176.8 217 50.2
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 2.1e-42 176.8 227 50.2
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 1.7e-41 173.7 220 50.5
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 5.1e-41 172.2 278 42.4
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 6.6e-41 171.8 206 49.5
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.1e-40 171.0 205 49.3
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.1e-40 171.0 205 51.2
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.1e-40 171.0 228 48.7
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.5e-40 169.9 240 47.1
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 5.6e-40 168.7 220 47.7
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 7.3e-40 168.3 204 51.5
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 2.1e-39 166.8 209 50.2
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.3e-38 163.3 172 56.4
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 7.6e-37 158.3 217 48.4
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 9.9e-37 157.9 219 46.1
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.7e-36 157.1 149 57.7
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.9e-36 156.4 208 48.6
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 2.4e-35 153.3 190 50.0
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 4.1e-35 152.5 194 46.9
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-34 151.0 216 45.4
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 2.1e-34 150.2 236 44.9
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.7e-34 149.8 253 40.3
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 2.7e-34 149.8 221 46.6
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 2.7e-34 149.8 221 46.6
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 7.8e-34 148.3 173 52.0
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-33 147.5 219 46.1
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.7e-33 147.1 220 45.0
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 1.7e-33 147.1 201 49.3
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 3.9e-33 146.0 216 44.4
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 5.1e-33 145.6 244 40.2
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-32 144.4 223 43.5
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 3.3e-32 142.9 221 43.9
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 3.3e-32 142.9 226 43.4
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 5.6e-32 142.1 225 41.8
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 5.6e-32 142.1 208 43.8
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.8e-30 137.1 172 46.5
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 4.4e-29 132.5 157 52.2
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 5.8e-29 132.1 200 41.5
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 9.9e-29 131.3 227 42.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.3e-28 131.0 195 45.6
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 4.9e-28 129.0 153 52.3
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 3.2e-27 126.3 171 46.8
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 7.1e-27 125.2 174 46.6
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 2.7e-26 123.2 226 41.2
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 3.0e-25 119.8 225 37.3
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 7.3e-24 115.2 202 42.1
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 2.8e-23 113.2 197 40.6
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 2.8e-23 113.2 197 40.6
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 4.8e-23 112.5 171 45.0
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.1e-22 111.3 141 48.9
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.4e-22 110.9 257 36.2
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.4e-22 110.9 257 36.2
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.0e-21 107.1 116 54.3
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-20 104.4 186 40.3
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 8.4e-20 101.7 187 42.8
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 8.4e-20 101.7 73 67.1
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.4e-19 100.9 199 39.2
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.4e-19 100.9 179 42.5
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 2.4e-19 100.1 86 60.5
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 4.6e-18 95.9 186 38.2
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 1.3e-17 94.4 158 39.9
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 2.3e-17 93.6 135 46.7
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 3.9e-17 92.8 153 45.1
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.5e-16 90.1 161 41.0
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 4.3e-16 89.4 153 37.9
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-15 87.4 63 66.7
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-15 87.4 63 66.7
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-15 87.4 63 66.7
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-15 87.4 63 66.7
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 6.2e-15 85.5 60 68.3
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 56 73.2
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 58 69.0
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-14 84.3 56 73.2
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 3.1e-14 83.2 56 71.4
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 1.2e-13 81.3 187 37.4
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.2e-13 81.3 168 36.9
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.6e-13 80.1 94 48.9
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 1.3e-12 77.8 54 70.4
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 1.3e-12 77.8 187 36.9
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 4.9e-12 75.9 51 70.6
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 7.1e-11 72.0 46 73.9
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 7.1e-11 72.0 46 73.9
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.2e-10 71.2 51 68.6
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 5.1e-09 65.9 134 38.8
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.1e-08 64.7 88 47.7
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 1.5e-08 64.3 190 28.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.1e-07 60.5 87 42.5
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.1e-07 60.5 76 50.0
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 2.8e-07 60.1 36 80.6
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 6.9e-06 55.5 46 56.5


User provided reference genes

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