Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.6e-244 849.0 419 100.0
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 4.8e-241 837.4 419 98.6
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 2.4e-237 825.1 419 96.7
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.7e-236 821.6 419 96.4
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 3.7e-217 758.1 416 89.2
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.9e-181 639.4 419 73.7
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 2.6e-170 602.4 419 70.6
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.3e-161 573.5 417 65.9
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 7.0e-160 567.8 418 66.5
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 6.0e-151 538.1 424 63.2
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.1e-149 533.9 414 62.8
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 2.1e-148 529.6 413 63.4
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 1.1e-147 527.3 425 63.8
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 6.8e-147 524.6 417 60.9
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.4e-146 522.3 413 62.0
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 9.9e-146 520.8 413 62.0
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.7e-145 520.0 413 61.7
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 4.9e-145 518.5 412 62.1
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 6.0e-143 511.5 417 58.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 3.0e-142 509.2 382 64.4
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 6.6e-142 508.1 400 62.5
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.5e-141 506.9 413 61.0
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 1.6e-140 503.4 412 61.2
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 1.2e-135 487.3 426 59.2
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 2.7e-135 486.1 395 59.0
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 2.7e-135 486.1 405 59.0
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 3.9e-134 482.3 426 57.7
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 1.9e-133 479.9 424 57.8
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 4.8e-132 475.3 413 57.1
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 4.8e-132 475.3 407 56.8
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 4.0e-131 472.2 420 55.7
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 6.9e-131 471.5 405 57.8
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.2e-130 470.7 417 55.2
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.6e-130 469.5 405 57.5
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 9.9e-130 467.6 399 58.4
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 4.9e-129 465.3 401 57.4
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.4e-128 463.0 412 56.6
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 2.4e-128 463.0 408 56.9
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 5.4e-128 461.8 416 55.5
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 3.5e-127 459.1 415 53.5
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 6.0e-127 458.4 404 56.7
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 1.1e-125 454.1 414 56.8
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 3.7e-124 449.1 424 53.1
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 1.1e-123 447.6 411 54.3
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 2.6e-122 443.0 415 53.5
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 2.6e-122 443.0 425 55.1
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 2.6e-122 443.0 413 52.5
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 3.4e-122 442.6 419 55.6
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.9e-121 439.5 414 53.4
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.4e-120 437.2 424 51.2
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.9e-120 436.8 413 53.0
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 2.4e-120 436.4 413 52.3
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 4.2e-120 435.6 413 52.5
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 2.7e-119 433.0 414 53.6
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 7.9e-119 431.4 392 54.6
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 3.0e-118 429.5 381 55.4
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.6e-117 424.5 398 54.0
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 8.2e-116 421.4 419 53.0
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 8.2e-116 421.4 411 51.6
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.8e-115 420.2 399 52.6
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.2e-114 417.5 398 53.0
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.5e-114 417.2 382 53.7
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 4.5e-114 415.6 402 53.7
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.9e-112 410.2 391 51.9
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 2.7e-111 406.4 400 50.5
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 4.6e-111 405.6 419 51.6
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 7.9e-111 404.8 406 51.0
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.0e-110 404.4 399 52.9
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.3e-110 404.1 399 53.6
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 2.3e-110 403.3 399 52.1
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 5.1e-110 402.1 399 52.1
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.1e-109 401.0 391 51.9
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.9e-109 400.2 400 52.8
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 7.4e-109 398.3 399 52.4
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 2.2e-108 396.7 419 48.7
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 3.7e-108 396.0 368 54.6
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.8e-107 393.7 430 47.4
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 4.1e-107 392.5 404 52.0
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 5.9e-106 388.7 396 49.2
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 1.3e-105 387.5 381 50.4
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 5.0e-105 385.6 399 51.9
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 8.5e-105 384.8 399 51.9
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.4e-104 384.0 385 52.2
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.4e-104 384.0 384 52.1
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.5e-104 383.3 384 51.8
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 1.6e-103 380.6 388 52.3
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 3.6e-103 379.4 376 52.1
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 4.6e-103 379.0 391 52.2
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 1.0e-102 377.9 391 52.2
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 5.1e-102 375.6 391 51.9
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 6.7e-102 375.2 390 50.8
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 6.7e-102 375.2 427 48.9
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 8.7e-102 374.8 391 51.9
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 4.8e-100 369.0 425 48.9
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 4.5e-98 362.5 365 52.1
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 3.2e-96 356.3 287 63.4
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 5.5e-96 355.5 390 51.0
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 2.6e-93 346.7 388 47.9
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 3.3e-93 346.3 400 45.5
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.5e-90 337.4 276 63.4
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 3.0e-86 323.2 334 55.1
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 5.2e-86 322.4 396 44.4
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.8e-86 321.6 324 51.5
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 3.3e-85 319.7 308 53.6
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 4.8e-84 315.8 253 61.3
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.4e-75 287.7 400 43.8
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 6.5e-73 278.9 297 49.5
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 4.2e-72 276.2 286 49.0
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.1e-71 272.3 273 52.0
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 1.8e-70 270.8 171 74.3
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 1.3e-68 264.6 206 63.1
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 1.3e-68 264.6 233 56.2
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.0e-65 255.0 404 37.1
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 8.6e-65 251.9 193 62.7
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 4.7e-63 246.1 418 36.1
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 1.3e-60 238.0 367 36.2
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-56 224.2 168 64.3
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.6e-55 221.1 193 55.4
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 1.3e-52 211.5 179 59.8
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 5.6e-48 196.1 253 43.1
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 5.4e-43 179.5 211 47.9
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 7.8e-42 175.6 162 51.9
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-41 174.5 136 63.2
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.5e-40 170.6 165 50.9
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 3.4e-37 160.2 176 50.6
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 4.4e-37 159.8 107 69.2
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.1e-35 152.5 322 31.1
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 1.0e-33 148.7 179 45.8
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.6e-31 140.2 111 64.0
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.1e-30 138.7 115 60.9
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.0e-30 136.7 278 32.0
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 3.8e-28 130.2 162 45.7
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.7e-25 119.0 105 58.1
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 1.4e-22 111.7 101 53.5
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.9e-14 82.8 117 37.6
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.7e-12 78.2 117 35.9
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 1.8e-09 68.2 86 40.7
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.6e-08 63.2 86 37.2
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 1.3e-07 62.0 69 46.4
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 4.8e-07 60.1 53 58.5


User provided reference genes

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