Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0591 Fragaria x ananassa HOM05D007618 ORTHO05D009606 1.2e-118 429.9 217 100.0
FAN15G3577 Fragaria x ananassa HOM05D007618 ORTHO05D009606 1.4e-87 326.6 179 91.1
FvH4_2g16570 Fragaria vesca HOM05D007618 ORTHO05D009606 4.1e-87 325.1 164 98.2
RcHm_v2.0_Chr6g0280641 Rosa chinensis HOM05D007618 ORTHO05D009606 3.9e-85 318.5 164 94.5
QL11p055874 Quercus lobata HOM05D007618 ORTHO05D009606 4.6e-78 295.0 179 81.0
Prupe.8G177800 Prunus persica HOM05D007618 ORTHO05D009606 1.7e-77 293.1 164 86.0
ClCG02G010360 Citrullus lanatus HOM05D007618 ORTHO05D009606 2.3e-77 292.7 167 86.8
MD10G1139000 Malus domestica HOM05D007618 ORTHO05D009606 6.6e-77 291.2 164 86.6
TAR628G0843 Trochodendron aralioides HOM05D007618 ORTHO05D009606 1.5e-76 290.0 164 86.0
CsaV3_6G010180 Cucumis sativus L. HOM05D007618 ORTHO05D009606 4.3e-76 288.5 164 86.0
CiPaw.05G091300 Carya illinoinensis HOM05D007618 ORTHO05D009606 5.6e-76 288.1 164 86.6
Dinv14162 Davidia involucrata HOM05D007618 ORTHO05D009606 1.2e-75 287.0 164 86.0
TAR376G0137 Trochodendron aralioides HOM05D007618 ORTHO05D009606 3.6e-75 285.4 164 84.1
MELO3C013504.2 Cucumis melo HOM05D007618 ORTHO05D009606 1.1e-74 283.9 164 84.8
Nn6g31724 Nelumbo nucifera HOM05D007618 ORTHO05D009606 3.1e-74 282.3 164 84.1
COL.COLO4_26755 Corchorus olitorius HOM05D007618 ORTHO05D009606 4.0e-74 282.0 190 72.6
Potri.004G204700 Populus trichocarpa HOM05D007618 ORTHO05D009606 4.0e-74 282.0 164 84.8
PGR142G1310 Punica granatum HOM05D007618 ORTHO05D009606 5.2e-74 281.6 164 82.9
Sed0023624 Sechium edule HOM05D007618 ORTHO05D009606 6.8e-74 281.2 164 83.5
Manes.04G067600 Manihot esculenta HOM05D007618 ORTHO05D009606 8.9e-74 280.8 164 83.5
Sabra09G0129500 Salix brachista HOM05D007618 ORTHO05D009606 8.9e-74 280.8 165 82.4
Lj1g0004638 Lotus japonicus HOM05D007618 ORTHO05D009606 1.2e-73 280.4 164 83.5
Ciclev10029401m.g Citrus clementina HOM05D007618 ORTHO05D009606 2.6e-73 279.3 164 82.9
Potri.009G165700 Populus trichocarpa HOM05D007618 ORTHO05D009606 2.6e-73 279.3 164 83.5
GSVIVG01023981001 Vitis vinifera HOM05D007618 ORTHO05D009606 2.6e-73 279.3 164 83.5
Eucgr.I01514 Eucalyptus grandis HOM05D007618 ORTHO05D009606 3.4e-73 278.9 164 83.5
CANSAT64G2827 Cannabis sativa HOM05D007618 ORTHO05D009606 1.3e-72 276.9 163 82.8
Thecc.06G045200 Theobroma cacao HOM05D007618 ORTHO05D009606 1.7e-72 276.6 164 81.1
SalBow1G1919 Salvia bowleyana HOM05D007618 ORTHO05D009606 8.3e-72 274.2 165 81.2
Lalb_Chr08g0246841 Lupinus albus HOM05D007618 ORTHO05D009606 1.1e-71 273.9 158 84.2
Sabra04G0138200 Salix brachista HOM05D007618 ORTHO05D009606 1.1e-71 273.9 162 83.3
Hma1.2p1_0271F.1_g108950 Hydrangea macrophylla HOM05D007618 ORTHO05D009606 1.4e-71 273.5 164 80.5
arahy.Tifrunner.gnm1.ann1.I7PWT1 Arachis hypogaea HOM05D007618 ORTHO05D009606 2.4e-71 272.7 184 74.5
Phvul.009G116000 Phaseolus vulgaris HOM05D007618 ORTHO05D009606 3.2e-71 272.3 164 80.5
Gohir.D10G000400 Gossypium hirsutum HOM05D007618 ORTHO05D009606 1.2e-70 270.4 164 78.7
Gorai.011G000800 Gossypium raimondii HOM05D002478 ORTHO05D003331 1.2e-70 270.4 164 78.7
Glyma.06G000700 Glycine max HOM05D007618 ORTHO05D009606 1.6e-70 270.0 163 79.8
Hund06167 Selenicereus undatus HOM05D007618 ORTHO05D009606 4.6e-70 268.5 164 78.0
HanXRQChr14g0459071 Helianthus annuus HOM05D007618 ORTHO05D009606 1.3e-69 266.9 164 76.8
Solyc01g112170.3 Solanum lycopersicum HOM05D007618 ORTHO05D009606 1.7e-69 266.5 164 77.4
Sopen01g054220 Solanum pennellii HOM05D007618 ORTHO05D009606 1.7e-69 266.5 164 77.4
SGA_v2.0_scaffold32G13341 Striga asiatica HOM05D007618 ORTHO05D009606 1.7e-69 266.5 163 79.8
MBI08_g32524_MAGBIO Magnolia biondii HOM05D007618 ORTHO05D009606 2.3e-69 266.2 158 84.2
Cc09_g10690 Coffea canephora HOM05D007618 ORTHO05D009606 3.0e-69 265.8 164 76.8
MSTRG.19948 Avicennia marina HOM05D007618 ORTHO05D009606 3.9e-69 265.4 164 77.4
Nitab4.5_0000783g0170 Nicotiana tabacum HOM05D007618 ORTHO05D009606 1.1e-68 263.8 163 79.8
EL10Ac9g21249 Beta vulgaris HOM05D007618 ORTHO05D009606 2.5e-68 262.7 166 76.5
Migut.B00014 Erythranthe guttata HOM05D007618 ORTHO05D009606 7.3e-68 261.2 164 76.8
PSO541G4833 Papaver somniferum HOM05D007618 ORTHO05D009606 1.6e-67 260.0 164 76.8
Cfa005346 Carpinus fangiana HOM05D007618 ORTHO05D009606 2.1e-67 259.6 152 84.2
Gohir.A10G000200 Gossypium hirsutum HOM05D002478 ORTHO05D003331 1.8e-66 256.5 185 69.2
HPP92_022157 Vanilla planifolia HOM05D007618 ORTHO05D009606 4.0e-66 255.4 165 77.6
arahy.Tifrunner.gnm1.ann1.ZSY7EJ Arachis hypogaea HOM05D007618 ORTHO05D009606 3.4e-65 252.3 162 77.8
AUR62011704 Chenopodium quinoa HOM05D007618 ORTHO05D009606 9.9e-65 250.8 167 73.7
PSO675G2292 Papaver somniferum HOM05D007618 ORTHO05D009606 6.4e-64 248.1 164 74.4
Lsat_1_v5_gn_8_120421 Lactuca sativa HOM05D007618 ORTHO05D009606 1.4e-63 246.9 155 76.8
Nitab4.5_0011212g0030 Nicotiana tabacum HOM05D007618 ORTHO05D009606 7.1e-63 244.6 180 70.6
QL11p055571 Quercus lobata HOM05D007618 ORTHO05D009606 9.2e-63 244.2 139 84.9
Sc18g0005980 Simmondsia chinensis HOM05D007618 ORTHO05D009606 3.5e-62 242.3 152 79.6
Peaxi162Scf00362g00251 Petunia axillaris HOM05D007618 ORTHO05D009606 7.8e-62 241.1 167 73.7
Duzib235G1428 Durio zibethinus HOM05D007618 ORTHO05D009606 3.9e-61 238.8 168 73.2
vmacro02327 Vaccinium macrocarpon HOM05D007618 ORTHO05D009606 6.6e-61 238.0 254 54.7
Actinidia20565 Actinidia chinensis HOM05D007618 ORTHO05D009606 4.3e-60 235.3 153 76.5
CDE05G0820 Ceratophyllum demersum HOM05D007618 ORTHO05D009606 4.3e-60 235.3 163 69.9
DCAR_022841 Daucus carota HOM05D007618 ORTHO05D009606 1.4e-58 230.3 165 70.3
VMungo1309G2136 Vigna mungo HOM05D007618 ORTHO05D009606 2.4e-58 229.6 139 80.6
Glyma.04G001200 Glycine max HOM05D007618 ORTHO05D009606 3.5e-54 215.7 118 86.4
arahy.Tifrunner.gnm1.ann1.U2J3P2 Arachis hypogaea HOM05D007618 ORTHO05D009606 4.6e-54 215.3 133 78.9
Zm00001eb002550 Zea mays HOM05D007618 ORTHO05D009606 7.3e-52 208.0 139 71.9
arahy.Tifrunner.gnm1.ann1.DQ7S7B Arachis hypogaea HOM05D007618 ORTHO05D009606 5.4e-47 191.8 132 74.2
Rhsim11G0196900 Rhododendron simsii HOM05D007618 ORTHO05D009606 5.4e-47 191.8 114 80.7
Mapoly0032s0019 Marchantia polymorpha HOM05D007618 ORTHO05D009606 9.3e-47 191.0 164 55.5
ECA233G1377 Erigeron canadensis HOM05D007618 ORTHO05D009606 5.6e-44 181.8 113 76.1
Pp3c3_10700 Physcomitrium patens HOM05D007618 ORTHO05D009606 1.6e-43 180.3 158 53.8
Nn1g00573 Nelumbo nucifera HOM05D007618 ORTHO05D009606 2.4e-39 166.4 138 65.2
Atru.chr5.3531 Acer truncatum HOM05D007618 ORTHO05D009606 5.5e-39 165.2 100 82.0
SEGI_37348 Sequoiadendron giganteum HOM05D007618 ORTHO05D009606 7.9e-38 161.4 158 55.1
TPR.G29338 Trifolium pratense HOM05D007618 ORTHO05D009606 2.5e-36 156.4 100 76.0
FAN24G0716 Fragaria x ananassa HOM05D007618 ORTHO05D009606 4.3e-36 155.6 127 67.7
SMO367G1105 Selaginella moellendorffii HOM05D007618 ORTHO05D009606 3.2e-31 139.4 163 46.0
CBR_g37948 Chara braunii HOM05D007618 ORTHO05D009606 3.5e-30 136.0 160 39.4
CBR_g30676 Chara braunii HOM05D007618 ORTHO05D009606 2.3e-29 133.3 160 38.8
TPR.G38509 Trifolium pratense HOM05D007618 ORTHO05D009606 2.1e-27 126.7 67 88.1
Psat5g000560 Pisum sativum HOM05D007618 ORTHO05D009606 3.1e-26 122.9 70 82.9
Actinidia18005 Actinidia chinensis HOM05D007618 ORTHO05D009606 1.3e-24 117.5 94 62.8
Cre03.g200050 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 5.0e-24 115.5 160 35.0
PGSC0003DMG401014675 Solanum tuberosum HOM05D007618 ORTHO05D009606 6.5e-24 115.2 119 54.6
arahy.Tifrunner.gnm1.ann1.0TM8HZ Arachis hypogaea HOM05D007618 ORTHO05D009606 4.2e-23 112.5 64 81.2
Psat5g000680 Pisum sativum HOM05D007618 ORTHO05D009606 1.0e-21 107.8 107 55.1
Cre03.g200000 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 6.7e-21 105.1 162 32.1
Atru.chr5.3316 Acer truncatum HOM05D000282 ORTHO05D000272 4.3e-20 102.4 63 74.6
Cre12.g506850 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 4.3e-20 102.4 160 34.4
Atru.chr8.2195 Acer truncatum HOM05D000282 ORTHO05D009606 3.7e-19 99.4 65 70.8
MCO11G779 Micromonas commoda HOM05D007618 ORTHO05D009606 1.4e-18 97.4 162 33.3
CDE05G1760 Ceratophyllum demersum HOM05D007618 ORTHO05D009606 1.3e-16 90.9 62 64.5
Oeu006123.1 Olea europaea HOM05D007618 ORTHO05D009606 2.2e-16 90.1 72 66.7
Nn5g30826 Nelumbo nucifera HOM05D007618 ORTHO05D009606 3.2e-15 86.3 59 71.2
Atru.chr9.1689 Acer truncatum HOM05D000282 ORTHO05D009606 5.5e-15 85.5 56 71.4
ECA233G4785 Erigeron canadensis HOM05D007618 ORTHO05D009606 2.7e-14 83.2 54 72.2
Atru.chr4.2937 Acer truncatum HOM05D000282 ORTHO05D000272 1.7e-11 73.9 48 70.8
Cc03_g12640 Coffea canephora HOM05D007618 ORTHO05D009606 9.1e-10 68.2 71 54.9
Cfa022547 Carpinus fangiana HOM05D007618 ORTHO05D125993 5.5e-07 58.9 149 26.2
Nitab4.5_0007818g0010 Nicotiana tabacum HOM05D000059 ORTHO05D000528 5.5e-07 58.9 137 24.8
Nitab4.5_0000490g0030 Nicotiana tabacum HOM05D000059 ORTHO05D000528 7.2e-07 58.5 106 31.1
Nitab4.5_0007414g0030 Nicotiana tabacum HOM05D000059 ORTHO05D000528 7.2e-07 58.5 106 31.1
SGA_v2.0_scaffold110G31211 Striga asiatica HOM05D000059 ORTHO05D000528 7.2e-07 58.5 101 31.7
BcaB02g08600 Brassica carinata HOM05D000059 ORTHO05D000528 1.2e-06 57.8 101 33.7
Peaxi162Scf00009g00162 Petunia axillaris HOM05D000059 ORTHO05D000528 1.2e-06 57.8 106 29.2
Duzib106G1362 Durio zibethinus HOM05D000059 ORTHO05D000128 1.6e-06 57.4 132 25.8
BcaC06g33010 Brassica carinata HOM05D000059 ORTHO05D000528 2.1e-06 57.0 101 32.7
Ah.06g188210 Amaranthus hybridus HOM05D000059 ORTHO05D000128 2.7e-06 56.6 132 26.5
BcaB01g00471 Brassica carinata HOM05D000059 ORTHO05D000528 2.7e-06 56.6 101 32.7
A09p44990 Brassica napus HOM05D000059 ORTHO05D000528 2.7e-06 56.6 101 32.7
C08p27090 Brassica napus HOM05D000059 ORTHO05D000528 2.7e-06 56.6 101 32.7
BolC8t50323H Brassica oleracea HOM05D000059 ORTHO05D000528 2.7e-06 56.6 101 32.7
BraA09t39959Z Brassica rapa HOM05D000059 ORTHO05D000528 2.7e-06 56.6 101 32.7
HanXRQChr16g0510531 Helianthus annuus HOM05D000059 ORTHO05D000528 2.7e-06 56.6 137 24.1
TWI74G0993 Tripterygium wilfordii HOM05D000059 ORTHO05D000128 2.7e-06 56.6 132 25.0
MSTRG.19328 Avicennia marina HOM05D000059 ORTHO05D000128 3.6e-06 56.2 132 25.0
C07p46630 Brassica napus HOM05D000059 ORTHO05D000528 3.6e-06 56.2 101 32.7
BolC7t45178H Brassica oleracea HOM05D000059 ORTHO05D000528 3.6e-06 56.2 101 32.7
BcaB01g00411 Brassica carinata HOM05D000059 ORTHO05D000528 4.7e-06 55.8 101 32.7
BcaC02g09299 Brassica carinata HOM05D000059 ORTHO05D000528 4.7e-06 55.8 101 32.7
BcaC06g33354 Brassica carinata HOM05D000059 ORTHO05D000528 4.7e-06 55.8 101 32.7
A03p48530 Brassica napus HOM05D000059 ORTHO05D000528 4.7e-06 55.8 101 32.7
A04p07470 Brassica napus HOM05D000059 ORTHO05D000528 4.7e-06 55.8 101 32.7
C04p41130 Brassica napus HOM05D000059 ORTHO05D000528 4.7e-06 55.8 101 32.7
BolC4t25695H Brassica oleracea HOM05D000059 ORTHO05D000528 4.7e-06 55.8 101 32.7
BraA03t13958Z Brassica rapa HOM05D000059 ORTHO05D000528 4.7e-06 55.8 101 32.7
BraA04t16442Z Brassica rapa HOM05D000059 ORTHO05D000528 4.7e-06 55.8 101 32.7
CAN.G1055.1 Capsicum annuum HOM05D000059 ORTHO05D000528 4.7e-06 55.8 106 29.2
Lsat_1_v5_gn_5_149341 Lactuca sativa HOM05D000059 ORTHO05D000528 4.7e-06 55.8 137 24.8
Nitab4.5_0007282g0040 Nicotiana tabacum HOM05D000059 ORTHO05D000528 4.7e-06 55.8 138 25.4
Peaxi162Scf00141g01427 Petunia axillaris HOM05D000059 ORTHO05D000528 4.7e-06 55.8 106 30.2
Prupe.7G089600 Prunus persica HOM05D000059 ORTHO05D000128 4.7e-06 55.8 132 27.3
Sabra06G0078000 Salix brachista HOM05D000059 ORTHO05D000528 4.7e-06 55.8 132 27.3
CiPaw.09G024200 Carya illinoinensis HOM05D000059 ORTHO05D000128 7.9e-06 55.1 132 27.3
RcHm_v2.0_Chr3g0477401 Rosa chinensis HOM05D000059 ORTHO05D000128 7.9e-06 55.1 132 26.5
Sp5g10420 Schrenkiella parvula HOM05D000059 ORTHO05D000528 7.9e-06 55.1 106 31.1


User provided reference genes

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