Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1719.9 888 100.0
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1662.5 912 95.4
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1656.0 888 97.0
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1653.3 888 97.2
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1652.9 911 94.8
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1637.1 886 95.0
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1374.4 897 79.8
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1369.4 899 80.2
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1368.6 899 78.6
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1325.8 890 75.2
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1296.2 890 74.8
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1284.2 886 73.9
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1279.6 892 73.1
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1276.2 933 70.1
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1274.2 905 72.9
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1273.5 898 72.0
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1265.0 873 72.9
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1263.1 891 72.6
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1260.7 891 72.3
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1259.2 891 72.5
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1256.1 894 71.6
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1255.4 917 69.6
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1254.6 895 73.3
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1253.4 894 72.9
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1251.9 963 67.4
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1245.3 891 71.4
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1242.3 888 72.4
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1234.2 891 70.4
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1233.4 891 70.0
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1231.1 883 71.9
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1229.9 905 71.9
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1229.5 891 70.0
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1223.4 893 70.7
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1222.6 891 70.8
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1218.8 905 70.1
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1205.7 894 69.6
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1195.3 895 69.8
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1192.2 887 69.4
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 891 68.0
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1185.6 889 68.3
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1185.2 891 68.4
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1181.8 894 67.9
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1181.8 894 68.3
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1180.2 892 68.5
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1179.1 891 68.4
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1176.4 903 68.0
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1176.0 891 67.8
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1174.5 898 68.2
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1172.1 890 68.3
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1167.5 889 68.4
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1166.8 891 67.0
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1164.4 893 68.8
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1164.4 890 67.5
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1164.1 886 67.4
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1162.1 889 68.1
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1161.0 902 67.2
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1160.6 891 66.2
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1156.7 917 66.5
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1156.0 918 65.9
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 906 69.1
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1150.6 920 65.3
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1149.4 887 66.5
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1148.3 885 66.6
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1146.7 906 68.9
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1145.2 901 66.0
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1144.8 754 75.3
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1142.9 889 67.4
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1141.7 891 67.9
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 890 65.8
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1140.6 889 66.0
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 897 67.7
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1138.6 904 65.7
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1138.6 888 65.9
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1137.9 899 65.5
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1137.1 932 66.7
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1133.6 892 66.1
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1133.6 889 65.4
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1132.5 900 65.3
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1130.9 895 65.6
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1130.5 887 65.5
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1128.2 891 68.6
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1121.7 902 65.5
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1120.5 910 64.6
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1120.1 895 67.0
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1120.1 881 65.4
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1110.9 902 66.1
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1109.7 919 63.4
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1105.5 891 64.2
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1104.7 891 64.6
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1104.7 897 65.9
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1104.0 883 64.2
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1102.0 888 67.0
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1097.0 891 64.2
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1094.3 904 64.9
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1089.3 900 64.0
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1088.6 895 63.8
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1086.6 901 64.0
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1084.7 901 64.7
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1083.6 901 63.9
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1082.0 881 65.2
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1080.5 901 65.4
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1079.3 879 65.0
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1076.2 895 64.7
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1075.8 903 64.0
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1075.1 901 64.3
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 2.4e-311 1072.0 894 64.1
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 7.8e-310 1067.0 900 63.6
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.7e-309 1065.8 888 62.7
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 2.3e-309 1065.4 900 63.3
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 8.7e-309 1063.5 790 69.5
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 2.0e-305 1052.4 894 63.2
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 3.4e-305 1051.6 808 67.3
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.8e-304 1048.1 774 69.3
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.2e-302 1043.1 890 61.3
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 1.0e-301 1040.0 880 62.2
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 9.6e-300 1033.5 899 60.4
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 1.2e-297 1026.5 948 59.3
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.1e-295 1020.0 813 66.1
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 4.5e-289 998.0 889 61.4
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 1.3e-288 996.5 924 59.2
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 1.8e-282 976.1 799 63.7
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.8e-282 976.1 888 58.9
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 5.9e-281 971.1 892 60.7
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.0e-280 970.3 873 61.3
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 5.1e-277 958.0 613 76.8
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 7.7e-273 944.1 900 58.1
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.2e-272 942.6 896 58.6
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 5.5e-271 937.9 978 53.8
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 6.1e-270 934.5 590 77.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 6.1e-262 907.9 887 56.1
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.0e-261 907.1 803 58.4
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.2e-252 877.1 800 57.0
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.2e-251 872.8 932 54.2
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.2e-248 862.8 890 52.8
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.7e-243 846.7 788 56.3
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 2.2e-243 846.3 875 51.8
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 8.3e-243 844.3 898 52.6
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 2.0e-236 823.2 799 56.4
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 2.8e-230 802.7 798 53.5
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.2e-226 789.3 616 63.8
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.7e-225 786.2 793 53.1
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 5.9e-225 785.0 596 69.1
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 5.1e-208 728.8 797 48.1
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 3.3e-207 726.1 572 61.2
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.8e-203 712.6 781 48.4
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.1e-197 694.5 589 56.4
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.6e-193 680.6 636 58.3
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 8.1e-190 668.3 636 57.2
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 6.0e-185 652.1 610 52.5
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 3.9e-168 596.3 589 54.7
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 6.9e-165 585.5 897 40.9
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.1e-143 515.0 569 47.3
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 4.0e-136 490.0 528 50.9
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.8e-134 483.0 422 60.7
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 7.8e-116 422.5 600 37.7
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.3e-110 405.2 401 58.4
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.7e-110 404.8 513 45.6
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.2e-100 372.1 499 44.7
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.2e-95 355.5 266 65.4
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 1.0e-91 342.4 698 31.5
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 6.6e-83 313.2 225 66.7
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.2e-79 302.4 266 58.3
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 2.2e-70 271.6 175 73.1
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.1e-66 259.2 520 30.2
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.0e-59 234.6 156 74.4
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 4.8e-57 227.3 433 30.5
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 2.0e-34 152.1 179 51.4
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.3e-25 122.9 203 36.9
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 4.2e-21 107.8 74 74.3
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 8.0e-20 103.6 65 75.4
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.5e-18 99.4 125 49.6
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.8e-17 95.1 71 59.2
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 1.8e-11 75.9 74 56.8
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 5.7e-10 70.9 145 32.4


User provided reference genes

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