Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0570 Fragaria x ananassa HOM05D002011 ORTHO05D001948 5.9e-59 230.7 122 100.0
FAN20G1038 Fragaria x ananassa HOM05D002011 ORTHO05D001948 7.8e-59 230.3 121 100.0
FAN15G2620 Fragaria x ananassa HOM05D002011 ORTHO05D001948 1.4e-55 219.5 121 96.7
FAN24G0280 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.0e-54 215.7 121 95.9
FvH4_2g28270 Fragaria vesca HOM05D002011 ORTHO05D001948 2.7e-51 205.3 121 93.4
RcHm_v2.0_Chr6g0297181 Rosa chinensis HOM05D002011 ORTHO05D001948 5.8e-46 187.6 122 86.1
MD15G1131300 Malus domestica HOM05D002011 ORTHO05D001948 5.4e-28 127.9 122 63.9
MD08G1154000 Malus domestica HOM05D002011 ORTHO05D001948 9.3e-28 127.1 123 64.2
Prupe.1G486600 Prunus persica HOM05D002011 ORTHO05D001948 1.0e-26 123.6 125 62.4
Manes.03G011400 Manihot esculenta HOM05D002011 ORTHO05D001948 2.3e-26 122.5 115 60.0
Cfa013098 Carpinus fangiana HOM05D002011 ORTHO05D001948 2.4e-23 112.5 120 57.5
TWI34G1253 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 9.0e-23 110.5 120 56.7
TWI32G0803 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 1.3e-21 106.7 119 55.5
Potri.006G259700 Populus trichocarpa HOM05D002011 ORTHO05D001948 1.1e-20 103.6 118 53.4
Manes.16G126300 Manihot esculenta HOM05D002011 ORTHO05D001948 1.4e-20 103.2 115 58.3
Sabra06G0202900 Salix brachista HOM05D002011 ORTHO05D001948 7.1e-20 100.9 119 53.8
QL02p020109 Quercus lobata HOM05D002011 ORTHO05D001948 3.5e-19 98.6 110 55.5
CiPaw.07G227200 Carya illinoinensis HOM05D002011 ORTHO05D001948 4.6e-19 98.2 115 53.0
Cpa.g.sc127.2 Carica papaya HOM05D002011 ORTHO05D001948 7.9e-19 97.4 123 52.8
CsaV3_2G032320 Cucumis sativus L. HOM05D002011 ORTHO05D001948 5.1e-18 94.7 118 54.2
ClCG08G013560 Citrullus lanatus HOM05D002011 ORTHO05D001948 8.7e-18 94.0 118 53.4
MELO3C011282.2 Cucumis melo HOM05D002011 ORTHO05D001948 8.7e-18 94.0 118 53.4
CsaV3_4G036820 Cucumis sativus L. HOM05D002011 ORTHO05D001948 1.5e-17 93.2 123 52.0
Lj1g0007627 Lotus japonicus HOM05D002011 ORTHO05D001948 1.5e-17 93.2 116 49.1
Atru.chr7.2505 Acer truncatum HOM05D002011 ORTHO05D001948 1.9e-17 92.8 122 49.2
CiPaw.08G008100 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.9e-17 92.8 114 55.3
Ca_15760_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 2.5e-17 92.4 119 51.3
MELO3C016985.2 Cucumis melo HOM05D002011 ORTHO05D001948 4.3e-17 91.7 125 52.0
CANSAT25G2050 Cannabis sativa HOM05D002011 ORTHO05D001948 7.3e-17 90.9 122 50.0
PGR044G0932 Punica granatum HOM05D002011 ORTHO05D001948 2.8e-16 89.0 121 49.6
Cfa014930 Carpinus fangiana HOM05D020764 ORTHO05D017800 3.6e-16 88.6 115 49.6
Phvul.009G090200 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 8.1e-16 87.4 112 49.1
Psat5g036760 Pisum sativum HOM05D002011 ORTHO05D001948 3.1e-15 85.5 116 48.3
Cfa019323 Carpinus fangiana HOM05D002011 ORTHO05D001948 4.0e-15 85.1 113 51.3
Gohir.A05G057100 Gossypium hirsutum HOM05D002011 ORTHO05D001948 6.9e-15 84.3 116 50.9
vmacro11223 Vaccinium macrocarpon HOM05D002011 ORTHO05D001948 6.9e-15 84.3 118 49.2
Gohir.A07G030600 Gossypium hirsutum HOM05D002011 ORTHO05D001948 9.0e-15 84.0 118 50.0
VMungo1309G3164 Vigna mungo HOM05D002011 ORTHO05D001948 9.0e-15 84.0 114 47.4
Ah.10g035660 Amaranthus hybridus HOM05D002011 ORTHO05D001948 1.5e-14 83.2 112 50.9
Gohir.D07G034500 Gossypium hirsutum HOM05D002011 ORTHO05D001948 1.5e-14 83.2 118 49.2
Gorai.001G036200 Gossypium raimondii HOM05D002011 ORTHO05D001948 1.5e-14 83.2 118 49.2
Sed0005888 Sechium edule HOM05D002011 ORTHO05D001948 2.0e-14 82.8 117 51.3
Duzib168G0584 Durio zibethinus HOM05D002011 ORTHO05D001948 4.5e-14 81.6 120 48.3
Duzib187G1916 Durio zibethinus HOM05D002011 ORTHO05D001948 5.8e-14 81.3 118 50.8
Thhalv10025671m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 1.3e-13 80.1 126 48.4
Medtr3g106340 Medicago truncatula HOM05D002011 ORTHO05D001948 1.3e-13 80.1 116 48.3
Ciclev10009242m.g Citrus clementina HOM05D002011 ORTHO05D001948 1.7e-13 79.7 119 47.9
THA.LOC104803849 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 1.7e-13 79.7 122 49.2
Sed0021865 Sechium edule HOM05D002011 ORTHO05D001948 2.9e-13 79.0 117 46.2
BcaB06g28049 Brassica carinata HOM05D002011 ORTHO05D001948 8.4e-13 77.4 116 46.6
Hma1.2p1_0228F.1_g096600 Hydrangea macrophylla HOM05D002011 ORTHO05D001948 8.4e-13 77.4 115 46.1
Sp2g22330 Schrenkiella parvula HOM05D002011 ORTHO05D001948 8.4e-13 77.4 118 43.2
TAR383G0822 Trochodendron aralioides HOM05D002011 ORTHO05D001948 8.4e-13 77.4 120 45.8
CARHR188280 Cardamine hirsuta HOM05D002011 ORTHO05D001948 1.1e-12 77.0 120 42.5
Thhalv10004910m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 1.1e-12 77.0 118 45.8
Glyma.04G063900 Glycine max HOM05D002011 ORTHO05D001948 1.9e-12 76.3 116 43.1
AT5G25210 Arabidopsis thaliana HOM05D002011 ORTHO05D001948 2.4e-12 75.9 123 41.5
CARHR116290 Cardamine hirsuta HOM05D002011 ORTHO05D001948 2.4e-12 75.9 119 46.2
Eucgr.C01684 Eucalyptus grandis HOM05D002011 ORTHO05D001948 2.4e-12 75.9 75 58.7
AL6G36860 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 3.2e-12 75.5 123 42.3
Sed0015470 Sechium edule HOM05D002011 ORTHO05D001948 3.2e-12 75.5 121 46.3
BcaC02g08361 Brassica carinata HOM05D002011 ORTHO05D001948 9.3e-12 73.9 116 44.8
BcaNung06960 Brassica carinata HOM05D002011 ORTHO05D001948 9.3e-12 73.9 116 44.8
C04p55210 Brassica napus HOM05D002011 ORTHO05D001948 9.3e-12 73.9 116 44.8
Sed0017330 Sechium edule HOM05D002011 ORTHO05D001948 9.3e-12 73.9 116 44.8
Actinidia23086 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.2e-11 73.6 112 45.5
BraA04t17554Z Brassica rapa HOM05D002011 ORTHO05D001948 1.2e-11 73.6 116 44.0
A04p19630 Brassica napus HOM05D002011 ORTHO05D001948 1.6e-11 73.2 116 44.0
Carub.0007s0852 Capsella rubella HOM05D002011 ORTHO05D001948 1.6e-11 73.2 136 43.4
Rhsim02G0206600 Rhododendron simsii HOM05D002011 ORTHO05D001948 1.6e-11 73.2 120 44.2
BolC4t27060H Brassica oleracea HOM05D002011 ORTHO05D001948 2.1e-11 72.8 116 44.8
arahy.Tifrunner.gnm1.ann1.97EW8A Arachis hypogaea HOM05D002011 ORTHO05D001948 2.7e-11 72.4 125 40.8
Glyma.06G065100 Glycine max HOM05D002011 ORTHO05D001948 2.7e-11 72.4 118 44.1
Lalb_Chr08g0244281 Lupinus albus HOM05D002011 ORTHO05D001948 2.7e-11 72.4 116 44.8
AL7G19860 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 4.6e-11 71.6 124 48.4
Carub.0006s2302 Capsella rubella HOM05D002011 ORTHO05D001948 4.6e-11 71.6 124 40.3
HanXRQChr02g0050131 Helianthus annuus HOM05D002011 ORTHO05D001948 6.0e-11 71.2 117 43.6
THA.LOC104818603 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 6.0e-11 71.2 125 43.2
BcaC09g51992 Brassica carinata HOM05D002011 ORTHO05D001948 7.9e-11 70.9 117 44.4
C01p06900 Brassica napus HOM05D002011 ORTHO05D001948 7.9e-11 70.9 117 44.4
BolC1t00687H Brassica oleracea HOM05D002011 ORTHO05D001948 7.9e-11 70.9 117 44.4
CSS0035080 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 7.9e-11 70.9 112 45.5
CSS0039956 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 7.9e-11 70.9 112 47.3
Thecc.09G019200 Theobroma cacao HOM05D002011 ORTHO05D001948 7.9e-11 70.9 100 50.0
arahy.Tifrunner.gnm1.ann1.KT90FJ Arachis hypogaea HOM05D002011 ORTHO05D001948 1.0e-10 70.5 125 40.8
BraA01t00593Z Brassica rapa HOM05D002011 ORTHO05D001948 1.0e-10 70.5 117 47.0
Nn8g39727 Nelumbo nucifera HOM05D002011 ORTHO05D001948 1.0e-10 70.5 117 42.7
arahy.Tifrunner.gnm1.ann1.KH3NQE Arachis hypogaea HOM05D002011 ORTHO05D001948 1.3e-10 70.1 118 42.4
Dinv23313 Davidia involucrata HOM05D002011 ORTHO05D001948 1.3e-10 70.1 119 41.2
Lalb_Chr23g0268371 Lupinus albus HOM05D002011 ORTHO05D001948 1.3e-10 70.1 117 45.3
Nn2g12257 Nelumbo nucifera HOM05D002011 ORTHO05D001948 2.3e-10 69.3 120 45.0
TAR625G1096 Trochodendron aralioides HOM05D002011 ORTHO05D001948 2.3e-10 69.3 115 45.2
Atru.chr10.2381 Acer truncatum HOM05D002011 ORTHO05D001948 3.0e-10 68.9 119 37.8
Ah.16g104840 Amaranthus hybridus HOM05D002011 ORTHO05D001948 3.9e-10 68.6 106 42.5
arahy.Tifrunner.gnm1.ann1.ZE8HCZ Arachis hypogaea HOM05D002011 ORTHO05D001948 3.9e-10 68.6 118 42.4
Dinv18151 Davidia involucrata HOM05D002011 ORTHO05D001948 3.9e-10 68.6 118 40.7
Actinidia13206 Actinidia chinensis HOM05D002011 ORTHO05D001948 8.7e-10 67.4 116 41.4
BcaNung03130 Brassica carinata HOM05D002011 ORTHO05D001948 8.7e-10 67.4 123 43.9
A01p06260 Brassica napus HOM05D002011 ORTHO05D001948 8.7e-10 67.4 117 43.6
Sp4g04360 Schrenkiella parvula HOM05D002011 ORTHO05D001948 8.7e-10 67.4 119 42.9
THA.LOC104799044 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 8.7e-10 67.4 116 43.1
TWI63G1833 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 8.7e-10 67.4 121 43.8
BcaC01g01041 Brassica carinata HOM05D002011 ORTHO05D001948 1.1e-09 67.0 123 43.9
BolC3t21060H Brassica oleracea HOM05D002011 ORTHO05D001948 1.1e-09 67.0 123 43.9
Sc23g0006520 Simmondsia chinensis HOM05D002011 ORTHO05D001948 2.5e-09 65.9 112 45.5
Actinidia22311 Actinidia chinensis HOM05D002011 ORTHO05D001948 3.3e-09 65.5 116 38.8
AT4G32030 Arabidopsis thaliana HOM05D002011 ORTHO05D001948 3.3e-09 65.5 122 45.1
Cpa.g.sc10.124 Carica papaya HOM05D002011 ORTHO05D001948 3.3e-09 65.5 116 39.7
ClCG05G016560 Citrullus lanatus HOM05D002011 ORTHO05D001948 3.3e-09 65.5 73 56.2
THA.LOC104814118 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 3.3e-09 65.5 121 43.0
Aa31LG11G4430 Aethionema arabicum HOM05D002011 ORTHO05D001948 4.3e-09 65.1 117 42.7
CSS0040463 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 4.3e-09 65.1 99 45.5
Thhalv10000568m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 7.4e-09 64.3 127 40.2
Lsat_1_v5_gn_6_18481 Lactuca sativa HOM05D002011 ORTHO05D001948 7.4e-09 64.3 116 42.2
BcaB03g12730 Brassica carinata HOM05D002011 ORTHO05D001948 9.6e-09 63.9 125 44.0
CARHR239930 Cardamine hirsuta HOM05D002011 ORTHO05D001948 9.6e-09 63.9 124 41.9
Dinv03417 Davidia involucrata HOM05D002011 ORTHO05D001948 9.6e-09 63.9 112 42.9
PSO063G4963 Papaver somniferum HOM05D002011 ORTHO05D001948 9.6e-09 63.9 129 38.8
Eucgr.C02724 Eucalyptus grandis HOM05D002011 ORTHO05D001948 1.6e-08 63.2 121 40.5
Sp7g29830 Schrenkiella parvula HOM05D002011 ORTHO05D001948 2.1e-08 62.8 97 47.4
BcaNung03208 Brassica carinata HOM05D002011 ORTHO05D001948 2.8e-08 62.4 112 41.1
A03p61210 Brassica napus HOM05D002011 ORTHO05D001948 2.8e-08 62.4 97 43.3
TAR636G1642 Trochodendron aralioides HOM05D002011 ORTHO05D001948 3.7e-08 62.0 114 43.9
GSVIVG01035917001 Vitis vinifera HOM05D002011 ORTHO05D001948 3.7e-08 62.0 104 47.1
Ciclev10026302m.g Citrus clementina HOM05D002011 ORTHO05D001948 4.8e-08 61.6 127 38.6
QL05p034085 Quercus lobata HOM05D002011 ORTHO05D001948 4.8e-08 61.6 115 41.7
Sc09g0010370 Simmondsia chinensis HOM05D002011 ORTHO05D001948 4.8e-08 61.6 103 38.8
THA.LOC104803640 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 4.8e-08 61.6 118 42.4
BraA03t15165Z Brassica rapa HOM05D002011 ORTHO05D001948 6.2e-08 61.2 97 42.3
PSO782G4733 Papaver somniferum HOM05D002011 ORTHO05D001948 6.2e-08 61.2 129 38.8
Phvul.005G181100 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 6.2e-08 61.2 119 42.0
Cfa001910 Carpinus fangiana HOM05D002011 ORTHO05D001948 8.1e-08 60.8 117 40.2
VMungo1080G1625 Vigna mungo HOM05D002011 ORTHO05D001948 8.1e-08 60.8 123 42.3
BcaNung02288 Brassica carinata HOM05D002011 ORTHO05D001948 1.1e-07 60.5 126 40.5
A08p18360 Brassica napus HOM05D002011 ORTHO05D001948 1.1e-07 60.5 126 41.3
BolC7t44794H Brassica oleracea HOM05D002011 ORTHO05D001948 1.1e-07 60.5 126 40.5
TAR626G1639 Trochodendron aralioides HOM05D002011 ORTHO05D001948 1.1e-07 60.5 116 40.5
C07p42640 Brassica napus HOM05D002011 ORTHO05D001948 1.4e-07 60.1 126 40.5
Gohir.A06G183800 Gossypium hirsutum HOM05D002011 ORTHO05D001948 1.4e-07 60.1 122 36.9
Gorai.010G223900 Gossypium raimondii HOM05D002011 ORTHO05D001948 1.4e-07 60.1 122 36.9
MD09G1223300 Malus domestica HOM05D002011 ORTHO05D001948 1.4e-07 60.1 114 38.6
Nitab4.5_0002992g0100 Nicotiana tabacum HOM05D002011 ORTHO05D001948 1.4e-07 60.1 133 38.3
Oeu060123.1 Olea europaea HOM05D002011 ORTHO05D001948 1.4e-07 60.1 135 40.0
EL10Ac2g04150 Beta vulgaris HOM05D002011 ORTHO05D001948 1.8e-07 59.7 111 40.5
A06p35950 Brassica napus HOM05D002011 ORTHO05D001948 1.8e-07 59.7 115 39.1
HanXRQChr13g0403741 Helianthus annuus HOM05D002011 ORTHO05D001948 1.8e-07 59.7 117 39.3
MBI14_g15651_MAGBIO Magnolia biondii HOM05D002011 ORTHO05D001948 1.8e-07 59.7 112 38.4
Gohir.D06G190800 Gossypium hirsutum HOM05D002011 ORTHO05D001948 2.4e-07 59.3 122 36.9
C07p59060 Brassica napus HOM05D002011 ORTHO05D001948 3.1e-07 58.9 96 41.7
BolC7t46354H Brassica oleracea HOM05D002011 ORTHO05D001948 3.1e-07 58.9 96 41.7
BraA08t33793Z Brassica rapa HOM05D002011 ORTHO05D001948 3.1e-07 58.9 123 41.5
BraA06t26521Z Brassica rapa HOM05D002011 ORTHO05D001948 4.0e-07 58.5 115 38.3
Haze_16633 Corylus avellana HOM05D002011 ORTHO05D001948 4.0e-07 58.5 117 38.5
Haze_16635 Corylus avellana HOM05D002011 ORTHO05D001948 4.0e-07 58.5 117 38.5
MSTRG.11167 Avicennia marina HOM05D002011 ORTHO05D001948 6.9e-07 57.8 119 39.5
BraA07t32012Z Brassica rapa HOM05D002011 ORTHO05D001948 6.9e-07 57.8 115 35.7
AUR62031573 Chenopodium quinoa HOM05D002011 ORTHO05D001948 6.9e-07 57.8 93 40.9
SGA_v2.0_scaffold37G14736 Striga asiatica HOM05D002011 ORTHO05D001948 6.9e-07 57.8 114 42.1
A07p45090 Brassica napus HOM05D002011 ORTHO05D001948 9.0e-07 57.4 115 35.7
Lsat_1_v5_gn_6_115360 Lactuca sativa HOM05D002011 ORTHO05D001948 9.0e-07 57.4 118 36.4
Sp5g35160 Schrenkiella parvula HOM05D002011 ORTHO05D001948 9.0e-07 57.4 114 37.7
Actinidia25442 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.2e-06 57.0 122 38.5
arahy.Tifrunner.gnm1.ann1.H5ECBD Arachis hypogaea HOM05D002011 ORTHO05D001948 1.2e-06 57.0 113 38.1
arahy.Tifrunner.gnm1.ann1.W5XW0C Arachis hypogaea HOM05D002011 ORTHO05D001948 1.2e-06 57.0 113 38.1
CANSAT56G3958 Cannabis sativa HOM05D002011 ORTHO05D001948 1.2e-06 57.0 116 36.2
Lj5C77G14 Lonicera japonica HOM05D002011 ORTHO05D001948 1.2e-06 57.0 119 36.1
Duzib192G0037 Durio zibethinus HOM05D002011 ORTHO05D001948 1.5e-06 56.6 124 35.5
Carub.0002s2694 Capsella rubella HOM05D002011 ORTHO05D001948 2.0e-06 56.2 114 37.7
FAN05G1371 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.0e-06 56.2 113 39.8
FAN05G4451 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.0e-06 56.2 113 39.8
MSTRG.22780 Avicennia marina HOM05D002011 ORTHO05D001948 2.6e-06 55.8 117 39.3
Carub.0001s1559 Capsella rubella HOM05D002011 ORTHO05D001948 2.6e-06 55.8 112 41.1
FvH4_6g29000 Fragaria vesca HOM05D002011 ORTHO05D001948 2.6e-06 55.8 114 36.8
FAN14G4768 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.6e-06 55.8 114 36.8
C06p53920 Brassica napus HOM05D002011 ORTHO05D001948 3.4e-06 55.5 115 34.8
BolC6t40406H Brassica oleracea HOM05D002011 ORTHO05D001948 3.4e-06 55.5 115 34.8
CiPaw.01G252000 Carya illinoinensis HOM05D002011 ORTHO05D001948 3.4e-06 55.5 116 41.4
Nitab4.5_0009186g0020 Nicotiana tabacum HOM05D002011 ORTHO05D001948 3.4e-06 55.5 131 36.6
Cc08_g00170 Coffea canephora HOM05D002011 ORTHO05D001948 4.5e-06 55.1 105 41.9
FAN02G4077 Fragaria x ananassa HOM05D002011 ORTHO05D001948 7.6e-06 54.3 113 39.8
Actinidia18229 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.0e-05 53.9 117 38.5
Aqoxy7G03522 Aquilegia oxysepala HOM05D002011 ORTHO05D001948 1.0e-05 53.9 123 35.8


User provided reference genes

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