Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0241 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.7e-61 236.5 109 100.0
FvH4_3g21081 Fragaria vesca HOM05D000539 ORTHO05D000592 2.1e-39 165.6 142 62.0
FAN02G3402 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-38 161.4 158 56.3
FAN10G4183 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.3e-37 158.3 137 59.9
FAN14G5321 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.7e-36 156.0 153 56.2
FvH4_6g20174 Fragaria vesca HOM05D000539 ORTHO05D000592 2.4e-35 152.1 152 54.6
FAN22G0531 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.0e-35 150.6 149 54.4
FAN28G0003 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.0e-35 150.6 149 54.4
FAN02G3652 Fragaria x ananassa HOM05D000539 ORTHO05D000592 9.1e-35 150.2 161 52.2
FAN10G2166 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.3e-33 146.4 161 50.9
FAN07G1956 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.5e-33 143.7 143 57.3
FvH4_6g23071 Fragaria vesca HOM05D000539 ORTHO05D000233 9.4e-32 140.2 119 61.3
FvH4_5g31540 Fragaria vesca HOM05D000539 ORTHO05D000592 4.7e-31 137.9 141 53.9
FvH4_7g02151 Fragaria vesca HOM05D000539 ORTHO05D000592 1.0e-30 136.7 119 59.7
FvH4_4g16177 Fragaria vesca HOM05D000539 ORTHO05D000592 1.4e-30 136.3 125 57.6
FAN11G2856 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-30 136.3 119 60.5
FAN02G1901 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.4e-29 131.7 140 52.1
FvH4_2g18191 Fragaria vesca HOM05D000539 ORTHO05D000233 1.1e-27 126.7 135 54.1
FAN04G2002 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.8e-27 125.9 133 53.4
FAN11G1109 Fragaria x ananassa HOM05D000539 ORTHO05D000233 9.1e-27 123.6 137 53.3
FAN07G2711 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.9e-26 120.9 134 51.5
FAN17G2867 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.9e-26 120.9 138 50.7
FAN02G3231 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.9e-25 118.6 130 51.5
FAN25G2265 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.5e-25 117.5 133 49.6
FvH4_1g29808 Fragaria vesca HOM05D000539 ORTHO05D000592 3.3e-24 115.2 58 91.4
FAN15G1357 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.6e-23 112.8 105 55.2
FAN21G1162 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.8e-23 112.1 57 89.5
FAN09G0649 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.6e-23 111.7 58 87.9
FvH4_5g19271 Fragaria vesca HOM05D000539 ORTHO05D000233 2.3e-22 109.0 56 89.3
FAN04G2790 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.6e-21 105.5 108 53.7
FAN27G0861 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.6e-18 96.3 48 89.6
RcHm_v2.0_Chr5g0071751 Rosa chinensis HOM05D000539 ORTHO05D000592 1.3e-17 93.2 116 43.1
RcHm_v2.0_Chr2g0164701 Rosa chinensis HOM05D000539 ORTHO05D000592 2.5e-16 89.0 137 37.2
FvH4_3g31745 Fragaria vesca HOM05D000539 ORTHO05D000592 1.2e-15 86.7 45 88.9
RcHm_v2.0_Chr1g0316591 Rosa chinensis HOM05D000539 ORTHO05D000592 1.0e-14 83.6 117 38.5
RcHm_v2.0_Chr7g0228381 Rosa chinensis HOM05D000539 ORTHO05D000592 3.0e-14 82.0 140 34.3
RcHm_v2.0_Chr5g0020841 Rosa chinensis HOM05D000539 ORTHO05D000592 3.4e-13 78.6 147 34.0
FAN27G1050 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.7e-12 76.3 46 76.1
RcHm_v2.0_Chr3g0471941 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-12 76.3 147 33.3
RcHm_v2.0_Chr4g0391241 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-12 76.3 147 33.3
RcHm_v2.0_Chr4g0401821 Rosa chinensis HOM05D000539 ORTHO05D000592 2.2e-12 75.9 152 32.9
FAN09G4698 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.1e-11 73.6 150 29.3
FAN22G0206 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.4e-11 72.4 126 34.1
FAN28G0120 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.4e-11 72.4 87 47.1
RcHm_v2.0_Chr6g0275521 Rosa chinensis HOM05D000539 ORTHO05D000592 2.4e-11 72.4 150 30.0
FAN08G0188 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.2e-11 72.0 126 34.1
FAN05G1979 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.1e-11 71.6 150 28.7
FAN18G0712 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.1e-11 71.6 126 35.7
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 9.2e-11 70.5 150 30.0
RcHm_v2.0_Chr7g0203071 Rosa chinensis HOM05D000539 ORTHO05D000592 9.2e-11 70.5 57 54.4
FvH4_5g24830 Fragaria vesca HOM05D000539 ORTHO05D000592 1.2e-10 70.1 106 38.7
FAN18G0787 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-10 70.1 110 35.5
FAN22G1432 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.7e-10 68.9 125 33.6
RcHm_v2.0_Chr5g0079561 Rosa chinensis HOM05D000539 ORTHO05D000592 3.5e-10 68.6 150 29.3
RcHm_v2.0_Chr6g0263841 Rosa chinensis HOM05D000539 ORTHO05D000592 3.5e-10 68.6 57 52.6
FAN05G5337 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-10 68.2 56 53.6
FAN06G2612 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-10 68.2 56 53.6
FAN07G2556 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-10 68.2 56 53.6
FAN10G3314 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-10 68.2 56 53.6
FAN23G1524 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-10 68.2 56 53.6
FAN28G2269 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-10 68.2 56 53.6
FAN28G2905 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.6e-10 68.2 56 53.6
RcHm_v2.0_Chr3g0488981 Rosa chinensis HOM05D000539 ORTHO05D000592 7.8e-10 67.4 57 50.9
FAN14G5053 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.3e-09 66.6 56 51.8
FAN05G4673 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.7e-09 66.2 56 51.8
RcHm_v2.0_Chr4g0424911 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-09 66.2 150 27.3
FAN23G0667 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-09 65.9 57 49.1
FAN28G2943 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.3e-09 65.9 57 49.1
RcHm_v2.0_Chr5g0023941 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-09 65.9 66 45.5
RcHm_v2.0_Chr5g0072991 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-09 65.9 56 55.4
RcHm_v2.0_Chr7g0235441 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-09 65.9 56 55.4
RcHm_v2.0_Chr7g0209041 Rosa chinensis HOM05D000539 ORTHO05D000592 3.9e-09 65.1 150 28.7
RcHm_v2.0_Chr2g0140381 Rosa chinensis HOM05D000539 ORTHO05D000592 6.6e-09 64.3 150 28.7
DCAR_032014 Daucus carota HOM05D000539 ORTHO05D000592 1.1e-08 63.5 114 29.8
FvH4_3g26441 Fragaria vesca HOM05D000539 ORTHO05D000592 1.5e-08 63.2 57 47.4
FAN04G1435 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.5e-08 63.2 59 45.8
FAN08G0101 Fragaria x ananassa HOM05D007187 ORTHO05D009219 1.5e-08 63.2 56 51.8
RcHm_v2.0_Chr2g0095661 Rosa chinensis HOM05D000539 ORTHO05D000592 1.5e-08 63.2 150 26.0
RcHm_v2.0_Chr2g0134051 Rosa chinensis HOM05D000539 ORTHO05D000592 1.9e-08 62.8 56 53.6
RcHm_v2.0_Chr7g0227181 Rosa chinensis HOM05D000539 ORTHO05D000592 2.5e-08 62.4 150 26.0
FAN12G0188 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.3e-08 62.0 56 50.0
FAN18G4025 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.3e-08 62.0 57 45.6
FvH4_5g25800 Fragaria vesca HOM05D000539 ORTHO05D000592 4.3e-08 61.6 57 45.6
RcHm_v2.0_Chr2g0108851 Rosa chinensis HOM05D000539 ORTHO05D000592 4.3e-08 61.6 56 53.6
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 4.3e-08 61.6 56 53.6
FAN22G0175 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.6e-08 61.2 128 31.2
Prupe.8G058300 Prunus persica HOM05D000539 ORTHO05D000592 5.6e-08 61.2 135 30.4
RcHm_v2.0_Chr4g0395771 Rosa chinensis HOM05D000539 ORTHO05D000592 5.6e-08 61.2 56 51.8
FAN28G0205 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.3e-08 60.8 57 47.4
FvH4_2g07145 Fragaria vesca HOM05D000539 ORTHO05D000592 1.2e-07 60.1 57 45.6
FvH4_2g11482 Fragaria vesca HOM05D000539 ORTHO05D000592 1.2e-07 60.1 63 46.0
FvH4_6g17051 Fragaria vesca HOM05D000539 ORTHO05D000233 1.2e-07 60.1 56 46.4
FvH4_5g33852 Fragaria vesca HOM05D000539 ORTHO05D000592 1.6e-07 59.7 111 31.5
RcHm_v2.0_Chr1g0322411 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-07 59.7 47 51.1
FAN10G1931 Fragaria x ananassa HOM05D002161 ORTHO05D002619 2.1e-07 59.3 57 47.4
Prupe.1G237300 Prunus persica HOM05D000539 ORTHO05D000592 2.8e-07 58.9 154 29.2
Prupe.7G036200 Prunus persica HOM05D000539 ORTHO05D000592 3.6e-07 58.5 154 29.2
RcHm_v2.0_Chr4g0393851 Rosa chinensis HOM05D000539 ORTHO05D000592 3.6e-07 58.5 55 50.9
Prupe.2G045600 Prunus persica HOM05D000539 ORTHO05D000592 4.7e-07 58.2 151 29.8
Prupe.5G051700 Prunus persica HOM05D000539 ORTHO05D000592 4.7e-07 58.2 151 29.8
Prupe.6G200000 Prunus persica HOM05D000539 ORTHO05D000592 4.7e-07 58.2 154 29.2
Prupe.8G055800 Prunus persica HOM05D000539 ORTHO05D000592 4.7e-07 58.2 151 29.8
FAN19G0390 Fragaria x ananassa HOM05D000539 ORTHO05D000233 6.2e-07 57.8 105 31.4
FAN24G0755 Fragaria x ananassa HOM05D000539 ORTHO05D000592 6.2e-07 57.8 57 43.9
Prupe.1G310400 Prunus persica HOM05D000539 ORTHO05D000592 6.2e-07 57.8 151 29.1
Prupe.1G397800 Prunus persica HOM05D000539 ORTHO05D000592 6.2e-07 57.8 151 29.1
Prupe.4G253400 Prunus persica HOM05D000539 ORTHO05D000592 6.2e-07 57.8 151 29.1
Prupe.6G180100 Prunus persica HOM05D000539 ORTHO05D000592 8.0e-07 57.4 151 29.1
Prupe.3G129900 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-06 57.0 151 29.1
RcHm_v2.0_Chr2g0102071 Rosa chinensis HOM05D000539 ORTHO05D000592 1.1e-06 57.0 55 50.9
FvH4_3g31624 Fragaria vesca HOM05D000539 ORTHO05D000592 1.4e-06 56.6 56 46.4
FAN14G3091 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-06 56.6 50 52.0
FAN14G5943 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-06 56.6 50 52.0
FvH4_7g07223 Fragaria vesca HOM05D000539 ORTHO05D000592 1.8e-06 56.2 56 44.6
Prupe.1G183700 Prunus persica HOM05D000539 ORTHO05D000592 1.8e-06 56.2 151 29.1
RcHm_v2.0_Chr2g0114971 Rosa chinensis HOM05D000539 ORTHO05D000592 1.8e-06 56.2 56 50.0
RcHm_v2.0_Chr4g0407981 Rosa chinensis HOM05D000539 ORTHO05D000592 1.8e-06 56.2 55 50.9
RcHm_v2.0_Chr5g0045831 Rosa chinensis HOM05D000539 ORTHO05D000592 1.8e-06 56.2 78 41.0
FvH4_7g09681 Fragaria vesca HOM05D000539 ORTHO05D000233 2.3e-06 55.8 56 46.4
Prupe.4G092400 Prunus persica HOM05D000539 ORTHO05D000592 2.3e-06 55.8 151 28.5
Prupe.5G062900 Prunus persica HOM05D000539 ORTHO05D000592 2.3e-06 55.8 151 28.5
RcHm_v2.0_Chr4g0414241 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-06 55.8 57 47.4
RcHm_v2.0_Chr5g0072071 Rosa chinensis HOM05D000539 ORTHO05D000592 2.3e-06 55.8 57 47.4
FAN20G3111 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.1e-06 55.5 56 44.6
MELO3C028519.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.0e-06 55.1 78 32.1
MELO3C032706.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.0e-06 55.1 81 34.6
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 4.0e-06 55.1 55 45.5
FAN19G2795 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-06 55.1 56 44.6
Prupe.8G059600 Prunus persica HOM05D000539 ORTHO05D000592 6.8e-06 54.3 151 28.5
RcHm_v2.0_Chr2g0095171 Rosa chinensis HOM05D000539 ORTHO05D000592 6.8e-06 54.3 49 49.0
FvH4_1g26740 Fragaria vesca HOM05D000539 ORTHO05D000592 8.9e-06 53.9 56 44.6
FAN12G3432 Fragaria x ananassa HOM05D000539 ORTHO05D000592 8.9e-06 53.9 56 44.6
RcHm_v2.0_Chr6g0277891 Rosa chinensis HOM05D000539 ORTHO05D000592 8.9e-06 53.9 46 56.5


User provided reference genes

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