Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.6e-92 341.3 181 100.0
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 1.4e-88 329.7 181 96.7
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 5.5e-85 317.8 181 95.0
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.1e-84 315.8 181 94.5
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 1.6e-60 236.5 192 72.9
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.5e-58 229.9 179 74.3
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 1.0e-54 217.2 196 67.3
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 1.3e-54 216.9 196 66.3
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.0e-51 207.2 198 64.6
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 2.4e-48 196.1 204 60.3
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 4.1e-48 195.3 185 61.1
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 7.0e-48 194.5 206 59.7
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 9.1e-48 194.1 203 60.6
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 9.1e-48 194.1 201 58.2
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 9.1e-48 194.1 199 60.8
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.7e-47 192.6 199 60.3
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 3.5e-47 192.2 200 60.5
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 1.7e-46 189.9 209 56.5
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.7e-46 189.9 185 59.5
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 8.6e-46 187.6 189 58.2
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 8.6e-46 187.6 194 58.2
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 1.9e-45 186.4 202 57.9
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 5.5e-45 184.9 190 62.1
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 7.2e-45 184.5 200 58.5
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 9.5e-45 184.1 197 56.3
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 2.1e-44 183.0 200 59.5
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 2.1e-44 183.0 185 57.8
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 3.6e-44 182.2 183 56.8
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 4.7e-44 181.8 200 58.5
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.4e-43 180.3 188 56.9
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 1.4e-43 180.3 185 56.2
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 2.3e-43 179.5 190 58.9
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 1.2e-42 177.2 207 55.6
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 1.5e-42 176.8 190 56.3
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 3.4e-42 175.6 187 56.7
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 3.4e-42 175.6 188 55.9
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 4.4e-42 175.3 193 56.5
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 4.4e-42 175.3 172 62.2
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 5.7e-42 174.9 179 58.7
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 5.7e-42 174.9 188 55.9
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 9.8e-42 174.1 191 56.0
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.7e-41 173.3 186 58.1
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.7e-41 173.3 186 58.1
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.7e-41 173.3 203 55.7
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.7e-41 173.3 148 70.9
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 1.4e-40 170.2 186 56.5
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 3.1e-40 169.1 183 54.1
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 4.1e-40 168.7 185 55.1
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 7.0e-40 167.9 184 54.9
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 7.0e-40 167.9 184 56.5
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 1.2e-39 167.2 217 52.1
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.2e-39 167.2 179 57.5
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 1.6e-39 166.8 172 56.4
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 2.0e-39 166.4 178 55.6
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 2.0e-39 166.4 194 55.2
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 2.0e-39 166.4 187 57.2
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 2.7e-39 166.0 175 57.7
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 4.5e-39 165.2 174 58.6
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 4.5e-39 165.2 177 55.9
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 5.9e-39 164.9 181 53.6
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 5.9e-39 164.9 179 57.5
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 5.9e-39 164.9 193 52.8
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.3e-38 163.7 181 53.6
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.3e-38 163.7 252 46.8
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 1.3e-38 163.7 192 54.7
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.7e-38 163.3 175 54.3
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.7e-38 163.3 175 54.3
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 1.7e-38 163.3 197 54.8
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.7e-38 163.3 185 52.4
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 3.9e-38 162.2 170 54.7
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 3.9e-38 162.2 215 49.8
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 6.6e-38 161.4 175 53.7
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 6.6e-38 161.4 175 53.7
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 6.6e-38 161.4 197 54.8
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 6.6e-38 161.4 196 54.1
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 8.6e-38 161.0 175 54.9
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 1.1e-37 160.6 175 53.7
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 1.5e-37 160.2 189 55.0
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.3e-37 159.1 177 60.5
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 4.3e-37 158.7 198 48.0
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 5.6e-37 158.3 185 52.4
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 5.6e-37 158.3 210 47.6
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 9.5e-37 157.5 216 50.9
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.6e-36 156.8 190 51.1
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 2.1e-36 156.4 178 52.2
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 2.1e-36 156.4 177 55.4
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 2.1e-36 156.4 186 55.9
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 3.6e-36 155.6 177 54.8
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 1.4e-35 153.7 189 52.4
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 2.3e-35 152.9 214 46.7
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 2.3e-35 152.9 185 51.4
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 1.2e-34 150.6 200 49.5
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.2e-34 150.6 172 52.3
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 2.0e-34 149.8 177 53.1
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 2.0e-34 149.8 201 48.3
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.3e-33 147.1 176 50.6
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 1.3e-33 147.1 208 47.1
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 2.2e-33 146.4 172 51.2
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 4.9e-33 145.2 178 51.1
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 6.4e-33 144.8 200 46.0
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 1.1e-32 144.1 200 46.0
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 1.1e-32 144.1 223 44.8
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 5.4e-32 141.7 166 51.8
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.7e-30 136.7 176 48.3
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.3e-30 136.3 176 50.0
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 1.1e-29 134.0 242 40.5
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 1.1e-29 134.0 242 40.5
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 1.1e-29 134.0 166 50.6
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 1.1e-29 134.0 166 50.6
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.1e-29 134.0 181 48.1
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.1e-28 129.8 185 45.9
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 1.5e-26 123.6 188 43.6
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 2.0e-26 123.2 143 53.1
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 2.0e-26 123.2 185 42.7
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 9.8e-26 120.9 146 52.1
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 3.7e-25 119.0 171 47.4
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 5.4e-24 115.2 137 51.8
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 3.5e-23 112.5 129 53.5
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 6.0e-23 111.7 136 52.2
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.7e-22 110.2 124 54.8
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 6.6e-22 108.2 120 50.0
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 1.2e-20 104.0 170 40.6
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 2.3e-19 99.8 167 40.7
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 6.8e-19 98.2 169 39.1
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 9.9e-18 94.4 180 36.7
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 3.2e-16 89.4 164 37.8
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 1.2e-15 87.4 164 34.8
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 7.8e-15 84.7 180 35.0
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.1e-13 80.9 110 52.7
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.6e-12 75.9 68 55.9
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 2.4e-11 73.2 111 43.2
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.2e-10 70.9 109 39.4
FvH4_1g29942 Fragaria vesca HOM05D005391 ORTHO05D006694 2.7e-07 59.7 59 61.0
Hund13632 Selenicereus undatus HOM05D005391 ORTHO05D006694 1.0e-06 57.8 162 29.0
CBR_g39765 Chara braunii HOM05D005391 ORTHO05D006694 8.7e-06 54.7 170 28.8


User provided reference genes

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