Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.8e-82 308.5 154 100.0
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 9.4e-78 293.5 154 96.1
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 8.0e-77 290.4 154 95.5
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 5.2e-36 154.8 182 52.2
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.3e-34 150.2 183 51.9
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 2.2e-34 149.4 126 69.8
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 4.9e-34 148.3 182 51.1
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.1e-33 147.1 182 50.5
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.1e-33 147.1 183 51.4
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.1e-33 147.1 182 51.1
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.7e-32 142.5 183 49.7
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.0e-31 139.0 138 53.6
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.1e-31 138.3 181 47.0
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.1e-30 137.1 134 59.0
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.9e-30 136.3 132 60.6
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.5e-30 136.0 180 47.2
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.6e-30 134.8 137 54.7
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 5.6e-30 134.8 120 60.0
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 7.3e-30 134.4 173 49.1
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 9.6e-30 134.0 178 46.1
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 9.6e-30 134.0 178 46.1
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 9.6e-30 134.0 123 56.9
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 9.6e-30 134.0 133 56.4
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 9.6e-30 134.0 181 47.0
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 9.6e-30 134.0 120 58.3
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.2e-29 133.7 152 46.7
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.2e-29 133.7 161 46.0
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.6e-29 133.3 137 54.0
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.6e-29 133.3 130 56.9
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.8e-29 132.5 140 54.3
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 2.8e-29 132.5 164 47.6
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.8e-29 132.5 120 54.2
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 2.8e-29 132.5 136 53.7
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.8e-29 132.5 134 53.0
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.8e-29 132.5 129 57.4
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.8e-29 132.5 120 57.5
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 3.6e-29 132.1 120 60.0
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.6e-29 132.1 120 54.2
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 6.2e-29 131.3 117 60.7
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 6.2e-29 131.3 140 53.6
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 6.2e-29 131.3 120 57.5
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 6.2e-29 131.3 120 55.8
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 6.2e-29 131.3 137 51.8
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 8.1e-29 131.0 120 55.0
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 8.1e-29 131.0 161 45.3
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.1e-28 130.6 120 53.3
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.1e-28 130.6 120 58.3
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 1.1e-28 130.6 129 54.3
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.1e-28 130.6 133 51.1
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 1.1e-28 130.6 163 50.3
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.1e-28 130.6 137 50.4
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.4e-28 130.2 120 53.3
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.4e-28 130.2 131 55.7
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.8e-28 129.8 174 46.6
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.8e-28 129.8 138 52.2
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.8e-28 129.8 137 52.6
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.8e-28 129.8 120 57.5
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 2.4e-28 129.4 137 50.4
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 2.4e-28 129.4 130 53.1
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 2.4e-28 129.4 161 45.3
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.4e-28 129.4 123 57.7
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.1e-28 129.0 176 46.0
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 3.1e-28 129.0 131 55.7
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 3.1e-28 129.0 163 47.9
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 3.1e-28 129.0 138 53.6
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 4.0e-28 128.6 137 52.6
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 5.2e-28 128.3 127 54.3
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 5.2e-28 128.3 127 52.0
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.2e-28 128.3 137 50.4
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 5.2e-28 128.3 130 54.6
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 5.2e-28 128.3 127 52.8
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 6.8e-28 127.9 147 49.7
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 6.8e-28 127.9 176 46.0
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 8.9e-28 127.5 128 54.7
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 8.9e-28 127.5 131 55.0
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.2e-27 127.1 129 54.3
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.2e-27 127.1 128 51.6
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.2e-27 127.1 128 51.6
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.5e-27 126.7 127 53.5
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.5e-27 126.7 120 55.8
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.6e-27 125.9 120 54.2
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 2.6e-27 125.9 120 53.3
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 2.6e-27 125.9 162 47.5
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 2.6e-27 125.9 134 49.3
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 4.4e-27 125.2 123 55.3
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 4.4e-27 125.2 120 57.5
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 5.8e-27 124.8 151 47.7
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 5.8e-27 124.8 122 55.7
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 7.6e-27 124.4 151 46.4
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 7.6e-27 124.4 120 50.8
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 9.9e-27 124.0 140 52.1
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 2.2e-26 122.9 127 49.6
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.2e-26 122.9 120 50.8
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.2e-26 122.9 181 43.6
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 2.2e-26 122.9 127 51.2
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 3.8e-26 122.1 127 48.8
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 3.8e-26 122.1 127 48.8
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 3.8e-26 122.1 127 48.8
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.8e-26 122.1 120 52.5
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 3.8e-26 122.1 117 52.1
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 4.9e-26 121.7 140 50.7
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 6.4e-26 121.3 120 52.5
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 6.4e-26 121.3 137 47.4
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.4e-26 120.9 120 50.8
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 8.4e-26 120.9 120 50.8
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 1.1e-25 120.6 127 48.0
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 1.1e-25 120.6 127 48.0
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 1.9e-25 119.8 122 52.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.4e-25 119.4 120 54.2
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 2.4e-25 119.4 120 52.5
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 2.4e-25 119.4 132 53.0
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 5.4e-25 118.2 157 44.6
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 5.4e-25 118.2 162 44.4
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 5.4e-25 118.2 120 55.0
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.6e-24 116.7 139 46.0
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 2.1e-24 116.3 120 48.3
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 2.1e-24 116.3 119 49.6
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.1e-24 116.3 135 48.9
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.7e-24 115.9 176 40.9
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.5e-24 115.5 176 40.3
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.3e-23 112.8 130 49.2
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 3.0e-23 112.5 99 60.6
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 8.7e-23 110.9 129 48.1
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.5e-22 110.2 97 58.8
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 7.3e-22 107.8 136 48.5
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 9.6e-22 107.5 137 46.0
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 9.6e-22 107.5 137 46.0
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.6e-21 106.7 170 38.8
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 2.1e-21 106.3 122 45.1
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.4e-20 103.6 193 35.2
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 2.4e-20 102.8 123 50.4
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 3.1e-20 102.4 125 48.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 6.9e-20 101.3 196 35.7
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.5e-19 100.1 117 47.0
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 9.9e-19 97.4 131 42.7
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.3e-18 97.1 75 64.0
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.4e-17 92.8 125 44.8
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 4.3e-14 82.0 112 43.8
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 5.6e-14 81.6 138 35.5
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 7.3e-14 81.3 119 36.1
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.1e-13 79.7 95 49.5
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.4e-12 76.3 85 50.6
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.1e-12 75.9 129 40.3
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 2.2e-10 69.7 94 45.7
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.1e-08 63.2 43 65.1
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.0e-07 60.8 45 60.0
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.0e-07 60.8 45 60.0
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.0e-07 60.8 45 60.0


User provided reference genes

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