Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.0e-182 641.0 318 100.0
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.2e-153 545.8 285 94.0
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 9.2e-136 487.3 278 89.2
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.6e-133 478.0 327 76.8
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.6e-133 478.0 327 76.8
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.6e-116 423.3 250 84.8
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 4.2e-96 355.5 254 72.4
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 1.8e-94 350.1 270 63.7
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.3e-92 344.0 277 65.0
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 3.7e-92 342.4 270 64.4
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 6.9e-91 338.2 287 59.6
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.2e-90 337.4 268 63.8
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 1.7e-89 333.6 293 59.7
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 2.9e-89 332.8 272 62.1
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 4.9e-89 332.0 282 61.7
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.9e-88 330.1 275 60.7
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 5.5e-88 328.6 260 61.2
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 7.1e-88 328.2 274 61.7
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 7.1e-88 328.2 271 62.0
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 7.1e-88 328.2 271 62.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.2e-87 327.4 278 62.9
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.2e-87 327.4 285 59.3
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 2.1e-87 326.6 269 63.2
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 4.6e-87 325.5 269 59.9
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 1.8e-86 323.6 273 60.8
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 2.3e-86 323.2 268 60.8
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 5.1e-86 322.0 269 61.3
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 6.7e-86 321.6 264 62.5
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.9e-85 320.1 252 63.5
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.9e-85 320.1 269 61.0
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 5.6e-85 318.5 268 61.2
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 2.1e-84 316.6 287 59.2
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 4.8e-84 315.5 257 61.1
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 8.2e-84 314.7 254 62.2
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 1.1e-83 314.3 279 57.7
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 6.9e-83 311.6 287 54.0
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 6.9e-83 311.6 287 54.0
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 9.0e-83 311.2 270 57.0
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.0e-82 310.1 287 53.7
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.0e-82 310.1 269 58.0
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 4.5e-82 308.9 291 56.0
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 5.8e-82 308.5 275 58.5
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 5.8e-82 308.5 268 57.5
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.0e-81 307.8 270 57.8
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 3.8e-81 305.8 261 60.5
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 8.4e-81 304.7 269 59.1
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 3.2e-80 302.8 257 59.1
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 7.1e-80 301.6 257 60.7
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.6e-79 300.4 279 57.3
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.8e-78 297.0 282 55.0
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 1.8e-78 297.0 268 56.3
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 2.3e-78 296.6 262 54.6
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 3.0e-78 296.2 268 59.3
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 3.9e-78 295.8 255 57.6
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 6.7e-78 295.0 285 52.3
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 6.7e-78 295.0 268 58.6
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 1.5e-77 293.9 288 54.2
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.9e-77 293.5 269 56.5
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 5.7e-77 292.0 275 57.8
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 5.7e-77 292.0 283 53.7
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 2.8e-76 289.7 259 55.2
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 3.7e-76 289.3 268 56.0
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 4.8e-76 288.9 268 54.5
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 8.2e-76 288.1 286 50.0
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 8.2e-76 288.1 248 59.3
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 8.2e-76 288.1 282 55.3
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.8e-75 287.0 269 55.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 2.4e-75 286.6 253 57.3
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.0e-74 283.5 277 57.8
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 2.6e-74 283.1 269 55.0
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 1.1e-72 277.7 262 55.3
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.1e-71 273.5 287 51.6
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 2.7e-71 273.1 256 55.9
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 4.6e-71 272.3 388 42.8
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 4.6e-71 272.3 270 51.9
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 1.8e-70 270.4 265 55.8
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.8e-70 270.4 283 52.3
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 8.8e-70 268.1 291 48.1
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 1.4e-67 260.8 282 50.4
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.0e-66 256.9 234 59.4
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 5.9e-66 255.4 277 50.5
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 2.2e-65 253.4 270 50.4
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 5.5e-64 248.8 290 46.6
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 2.1e-63 246.9 269 51.7
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 3.6e-63 246.1 204 57.8
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 3.6e-63 246.1 271 51.7
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 4.7e-63 245.7 221 56.6
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 6.1e-63 245.4 261 46.4
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 1.8e-62 243.8 246 54.1
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.1e-61 241.1 255 51.0
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 9.7e-61 238.0 202 63.9
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 3.2e-56 223.0 227 53.7
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 3.5e-50 203.0 231 44.6
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.5e-45 187.6 181 54.1
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 2.6e-45 186.8 261 42.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 3.3e-45 186.4 174 54.0
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 2.8e-44 183.3 163 55.8
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.8e-44 182.6 203 49.3
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.1e-43 181.4 139 67.6
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.4e-43 181.0 283 39.2
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 3.1e-43 179.9 150 60.0
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 4.1e-43 179.5 144 65.3
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 2.7e-42 176.8 167 53.9
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 2.9e-41 173.3 271 40.2
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.2e-39 167.9 225 40.9
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 8.0e-39 165.2 148 55.4
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 8.0e-39 165.2 140 57.9
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 5.2e-38 162.5 148 54.7
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 5.2e-38 162.5 148 54.7
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 2.2e-36 157.1 138 57.2
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 8.3e-36 155.2 145 53.8
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 7.0e-35 152.1 131 56.5
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 7.0e-35 152.1 104 67.3
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 3.4e-29 133.3 302 32.8
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 9.8e-29 131.7 109 58.7
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 6.3e-28 129.0 82 74.4
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 2.9e-25 120.2 95 60.0
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.9e-24 117.5 271 31.4
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 4.3e-24 116.3 153 43.1
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 5.6e-24 115.9 127 52.8
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.2e-23 114.8 105 55.2
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 8.0e-23 112.1 63 74.6
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 5.2e-22 109.4 109 47.7
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 6.8e-22 109.0 97 52.6
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.2e-21 108.2 97 53.6
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.5e-21 107.8 127 48.0
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 2.4e-19 100.5 100 51.0
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 3.2e-19 100.1 301 26.2
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.1e-15 87.4 65 50.8
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 8.0e-15 85.5 81 54.3
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 3.2e-11 73.6 70 48.6
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 1.2e-10 71.6 61 54.1
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.1e-06 58.5 36 75.0


User provided reference genes

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