Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1716.8 863 100.0
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1706.0 863 99.4
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1699.1 863 99.0
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1675.6 863 97.9
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1643.2 852 97.4
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1592.4 864 92.1
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1500.3 820 91.2
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1450.6 841 86.2
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1445.6 861 85.0
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1438.3 865 84.5
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1429.1 867 83.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1422.1 866 83.6
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1419.8 859 83.2
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1412.9 855 83.5
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1411.7 864 83.4
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1409.8 859 83.2
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1406.0 856 83.2
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1405.2 865 82.5
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1401.7 831 85.6
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1401.7 868 82.8
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1401.3 860 82.8
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1397.5 866 82.2
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1394.4 898 79.8
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1389.8 864 82.5
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1388.2 870 81.8
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1385.9 837 83.3
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1385.5 864 82.2
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1384.8 870 81.6
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1384.4 870 81.6
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1383.2 877 80.8
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1382.5 843 83.3
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1382.5 865 82.2
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1381.7 860 82.1
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1380.9 864 81.8
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1378.6 858 81.8
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1377.8 864 81.9
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1377.1 864 82.1
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1376.7 865 81.0
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 862 82.0
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1370.5 856 82.1
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 905 78.5
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1366.3 864 80.6
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1365.9 861 81.0
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1364.7 839 82.1
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 864 80.6
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1359.7 847 81.2
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1359.0 843 82.3
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 865 80.7
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1357.4 861 81.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1356.7 836 82.9
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1355.5 834 82.1
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1352.8 862 79.6
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1352.8 864 80.7
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 844 81.4
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 811 83.6
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 840 81.2
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1347.4 861 80.4
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1346.6 865 80.6
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 836 81.0
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1343.9 856 79.7
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1342.4 844 80.8
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1341.6 891 74.7
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1339.7 865 79.5
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 879 77.5
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1337.8 856 79.6
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1337.4 861 78.9
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1337.4 857 79.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 826 81.2
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 826 81.0
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1333.9 840 82.3
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 856 79.4
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1324.7 837 81.5
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 867 79.4
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1322.0 837 79.5
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 862 76.9
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 850 78.1
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 840 78.5
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 844 79.7
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1299.6 845 79.4
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 845 77.6
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 895 76.3
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 846 77.7
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 817 80.0
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 831 78.3
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 889 74.9
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 785 83.4
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 879 76.0
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1285.8 812 79.4
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 841 78.1
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 840 78.0
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 840 78.0
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 840 78.0
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 843 78.1
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 849 76.9
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 849 76.7
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 826 77.8
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 820 79.0
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 837 77.4
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 853 76.1
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 853 76.1
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 853 76.1
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 853 76.1
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 841 77.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1273.8 829 78.4
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1273.5 826 77.1
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 821 78.0
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 825 79.4
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 823 78.0
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 817 79.1
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 817 79.4
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1266.9 834 78.1
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1266.9 817 78.8
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1265.8 834 78.1
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1261.1 826 78.8
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 824 78.9
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 817 77.7
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 779 82.0
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 846 72.0
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1250.3 828 78.3
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1250.0 864 76.5
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1249.6 818 78.1
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1249.2 864 74.8
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1248.8 832 77.8
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 832 76.2
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 823 76.9
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1229.9 821 77.1
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1227.6 827 75.2
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1226.8 882 73.2
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1210.7 843 74.9
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1209.5 818 74.8
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1207.2 719 84.3
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1205.3 907 70.0
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1201.4 759 79.8
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1195.6 842 74.6
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1182.2 835 75.6
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1179.1 813 72.6
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1169.1 772 75.8
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1166.8 818 72.1
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1130.9 813 71.5
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1120.5 737 79.0
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1110.9 816 69.9
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 4.9e-309 1064.3 837 68.6
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.2e-293 1012.3 598 81.9
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 3.6e-275 951.8 639 70.9
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.7e-273 944.5 847 62.3
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.5e-265 919.8 532 84.4
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.7e-264 916.4 598 75.1
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 4.1e-263 911.8 554 84.8
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.7e-188 662.1 710 54.4
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 7.2e-151 538.9 460 60.0
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 8.5e-144 515.4 329 78.4
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.1e-138 496.9 361 75.9
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 4.7e-110 403.3 319 71.2
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.1e-101 374.0 397 54.4
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.7e-99 368.2 270 70.0
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.2e-91 341.3 583 45.3
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 5.9e-60 236.9 156 76.3
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 7.7e-60 236.5 156 77.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 3.7e-46 191.0 163 59.5
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 2.4e-37 161.8 517 29.8
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 8.0e-33 146.7 462 28.1
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 4.0e-32 144.4 76 88.2
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.7e-30 139.0 474 26.8
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.1e-29 134.8 126 54.0
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.2e-28 132.9 471 28.0
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.2e-27 128.6 68 89.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.1e-26 126.3 429 28.7
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 4.7e-25 120.9 96 65.6
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.2e-20 106.3 74 71.6
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-16 90.5 266 27.8
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-15 89.4 220 32.3
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 7.5e-15 87.0 163 36.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 4.1e-13 81.3 78 53.8
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 1.8e-08 65.9 138 32.6
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-07 62.4 102 38.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.0e-07 62.4 38 78.9


User provided reference genes

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