Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 2.7e-94 349.0 217 100.0
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.5e-89 333.2 218 96.3
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 3.9e-85 318.5 218 93.6
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 8.6e-85 317.4 219 85.8
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 2.1e-83 312.8 218 92.7
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 2.3e-74 282.7 217 80.6
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 3.0e-53 212.6 222 64.9
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 1.8e-42 176.8 222 63.5
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 1.7e-32 143.7 175 55.4
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 4.9e-32 142.1 176 54.0
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 3.2e-31 139.4 175 55.4
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 5.5e-31 138.7 185 52.4
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 9.3e-31 137.9 162 54.9
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 1.3e-29 134.0 107 72.0
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 2.3e-29 133.3 143 62.9
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 2.3e-29 133.3 148 56.8
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 2.3e-29 133.3 171 52.0
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 5.1e-29 132.1 174 55.7
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 6.7e-29 131.7 143 62.2
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 6.7e-29 131.7 160 53.1
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 6.7e-29 131.7 168 54.2
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 1.1e-28 131.0 171 56.7
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 3.3e-28 129.4 151 56.3
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 9.6e-28 127.9 99 70.7
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 9.6e-28 127.9 153 53.6
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 9.6e-28 127.9 170 52.9
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 1.3e-27 127.5 180 50.6
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 1.6e-27 127.1 90 76.7
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 2.1e-27 126.7 96 74.0
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 2.8e-27 126.3 222 44.1
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 2.8e-27 126.3 160 53.1
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 3.7e-27 125.9 156 57.7
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 4.8e-27 125.6 96 71.9
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 4.8e-27 125.6 194 47.9
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 6.3e-27 125.2 181 49.7
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 6.3e-27 125.2 181 49.7
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 6.3e-27 125.2 133 63.2
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 6.3e-27 125.2 178 51.1
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 8.2e-27 124.8 97 69.1
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 1.8e-26 123.6 166 52.4
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 2.4e-26 123.2 165 52.1
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 3.1e-26 122.9 141 58.2
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 3.1e-26 122.9 178 52.2
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 4.1e-26 122.5 141 58.2
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 4.1e-26 122.5 155 54.8
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 9.0e-26 121.3 114 63.2
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 9.0e-26 121.3 154 53.9
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 1.2e-25 120.9 166 51.2
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 2.0e-25 120.2 126 57.1
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 2.6e-25 119.8 174 51.7
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 3.4e-25 119.4 158 54.4
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 3.4e-25 119.4 96 70.8
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 3.4e-25 119.4 103 63.1
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 3.4e-25 119.4 103 64.1
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 4.5e-25 119.0 156 52.6
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 4.5e-25 119.0 154 51.3
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 4.5e-25 119.0 138 54.3
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 7.6e-25 118.2 222 44.6
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 7.6e-25 118.2 90 68.9
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 1.0e-24 117.9 99 64.6
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 1.3e-24 117.5 152 53.9
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 1.3e-24 117.5 100 63.0
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 2.2e-24 116.7 78 76.9
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 3.8e-24 115.9 166 50.0
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 3.8e-24 115.9 75 84.0
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 3.8e-24 115.9 170 49.4
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 1.1e-23 114.4 97 67.0
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 1.1e-23 114.4 174 49.4
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.4e-23 114.0 162 51.2
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 1.4e-23 114.0 166 51.8
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.4e-23 114.0 163 52.1
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 1.9e-23 113.6 86 73.3
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 2.5e-23 113.2 174 48.9
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 2.5e-23 113.2 169 50.3
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 4.2e-23 112.5 91 65.9
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 5.5e-23 112.1 104 61.5
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 5.5e-23 112.1 166 52.4
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 7.2e-23 111.7 160 50.0
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 9.3e-23 111.3 167 46.7
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 1.2e-22 110.9 125 53.6
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 2.1e-22 110.2 161 46.6
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 2.7e-22 109.8 152 49.3
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 4.6e-22 109.0 144 51.4
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 4.6e-22 109.0 172 47.7
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 6.1e-22 108.6 180 47.8
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 2.3e-21 106.7 171 48.5
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 2.3e-21 106.7 124 54.0
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 2.3e-21 106.7 155 51.0
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 3.0e-21 106.3 105 59.0
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 3.9e-21 105.9 175 46.3
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 8.7e-21 104.8 149 49.0
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.1e-20 104.4 144 50.0
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 1.1e-20 104.4 133 49.6
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 1.9e-20 103.6 154 51.3
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 2.5e-20 103.2 74 74.3
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 7.4e-20 101.7 154 46.8
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 9.7e-20 101.3 154 46.8
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 1.3e-19 100.9 154 46.8
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 2.2e-19 100.1 158 47.5
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 3.7e-19 99.4 177 45.8
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 4.8e-19 99.0 148 47.3
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.8e-18 97.1 88 63.6
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 5.3e-18 95.5 96 59.4
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 1.5e-17 94.0 111 48.6
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 2.0e-17 93.6 142 49.3
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 3.4e-17 92.8 97 54.6
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 7.7e-17 91.7 89 61.8
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 1.7e-16 90.5 154 43.5
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 2.9e-16 89.7 166 44.6
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.1e-15 87.8 119 48.7
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 2.5e-15 86.7 164 42.1
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 1.2e-14 84.3 112 50.0
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 1.2e-14 84.3 119 49.6
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 1.6e-14 84.0 177 45.8
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 2.7e-14 83.2 71 63.4
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 7.9e-14 81.6 155 42.6
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 1.4e-13 80.9 127 48.8
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 2.3e-13 80.1 164 38.4
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 3.9e-13 79.3 170 40.6
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 1.1e-12 77.8 113 48.7
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 3.3e-12 76.3 58 65.5
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 1.3e-11 74.3 99 51.5
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 2.0e-09 67.0 153 37.3
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 2.6e-09 66.6 67 52.2
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.2e-08 63.5 123 43.1
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.2e-08 63.5 123 43.1
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 2.9e-08 63.2 111 45.0
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.9e-08 63.2 111 45.0


User provided reference genes

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