Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0039 Fragaria x ananassa HOM05D000207 ORTHO05D001482 6.0e-92 340.9 181 100.0
FAN28G2488 Fragaria x ananassa HOM05D000207 ORTHO05D001482 9.8e-26 120.9 103 61.2
FAN01G0878 Fragaria x ananassa HOM05D000207 ORTHO05D001482 2.2e-25 119.8 107 61.7
FAN06G1304 Fragaria x ananassa HOM05D000207 ORTHO05D001482 2.2e-25 119.8 107 61.7
FAN01G0571 Fragaria x ananassa HOM05D006974 ORTHO05D001482 6.4e-25 118.2 107 61.7
FvH4_7g27920 Fragaria vesca HOM05D000207 ORTHO05D001482 8.3e-25 117.9 107 61.7
FAN03G2759 Fragaria x ananassa HOM05D000207 ORTHO05D001482 8.3e-25 117.9 107 61.7
FAN06G0729 Fragaria x ananassa HOM05D000207 ORTHO05D001482 8.3e-25 117.9 107 61.7
RcHm_v2.0_Chr1g0374881 Rosa chinensis HOM05D000207 ORTHO05D001482 8.3e-25 117.9 108 60.2
FvH4_7g11440 Fragaria vesca HOM05D000207 ORTHO05D001482 1.9e-24 116.7 106 60.4
FAN06G0824 Fragaria x ananassa HOM05D000207 ORTHO05D001482 1.9e-24 116.7 107 60.7
FAN06G4974 Fragaria x ananassa HOM05D000207 ORTHO05D001482 1.9e-24 116.7 106 60.4
FAN10G3678 Fragaria x ananassa HOM05D000207 ORTHO05D001482 1.9e-24 116.7 107 60.7
Prupe.2G280200 Prunus persica HOM05D000207 ORTHO05D001482 5.6e-21 105.1 110 56.4
MD00G1104600 Malus domestica HOM05D000207 ORTHO05D001482 1.2e-20 104.0 110 56.4
MD07G1256300 Malus domestica HOM05D000207 ORTHO05D001482 4.7e-20 102.1 110 57.3
Ciclev10004178m.g Citrus clementina HOM05D000207 ORTHO05D001482 4.4e-18 95.5 110 51.8
Duzib205G0418 Durio zibethinus HOM05D000207 ORTHO05D001482 5.8e-18 95.1 108 52.8
Thecc.03G158600 Theobroma cacao HOM05D000207 ORTHO05D001482 5.8e-18 95.1 110 52.7
Cpa.g.sc3.296 Carica papaya HOM05D000207 ORTHO05D001482 1.7e-17 93.6 109 51.4
FAN20G0858 Fragaria x ananassa HOM05D000207 ORTHO05D001482 1.7e-17 93.6 42 95.2
MELO3C005408.2 Cucumis melo HOM05D000207 ORTHO05D001482 2.2e-17 93.2 112 52.7
TWI39G1054 Tripterygium wilfordii HOM05D000207 ORTHO05D001482 2.2e-17 93.2 110 51.8
CsaV3_5G005470 Cucumis sativus L. HOM05D000207 ORTHO05D001482 2.9e-17 92.8 112 52.7
Rhsim03G0169300 Rhododendron simsii HOM05D000207 ORTHO05D001482 2.9e-17 92.8 113 49.6
Sed0012555 Sechium edule HOM05D000207 ORTHO05D001482 2.9e-17 92.8 110 50.9
vmacro06780 Vaccinium macrocarpon HOM05D000207 ORTHO05D001482 4.9e-17 92.0 113 50.4
Gorai.006G064300 Gossypium raimondii HOM05D000207 ORTHO05D001482 1.4e-16 90.5 110 51.8
Sp2g25500 Schrenkiella parvula HOM05D000207 ORTHO05D001482 1.4e-16 90.5 110 49.1
CiPaw.03G095900 Carya illinoinensis HOM05D000207 ORTHO05D001482 1.9e-16 90.1 110 49.1
Gohir.D09G046100 Gossypium hirsutum HOM05D000207 ORTHO05D001482 1.9e-16 90.1 110 51.8
Potri.015G129200 Populus trichocarpa HOM05D000207 ORTHO05D001482 1.9e-16 90.1 108 50.0
AT5G62310 Arabidopsis thaliana HOM05D000207 ORTHO05D001482 2.4e-16 89.7 112 46.4
Thhalv10003543m.g Eutrema salsugineum HOM05D000207 ORTHO05D001482 2.4e-16 89.7 112 46.4
Potri.012G127800 Populus trichocarpa HOM05D000207 ORTHO05D001482 2.4e-16 89.7 111 52.3
AL8G39140 Arabidopsis lyrata HOM05D000207 ORTHO05D001482 3.2e-16 89.4 109 48.6
GSVIVG01018574001 Vitis vinifera HOM05D000207 ORTHO05D001482 3.2e-16 89.4 112 50.9
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 4.1e-16 89.0 113 47.8
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 4.1e-16 89.0 113 47.8
BolC3t18715H Brassica oleracea HOM05D000207 ORTHO05D001482 4.1e-16 89.0 113 47.8
BraA06t25850Z Brassica rapa HOM05D000207 ORTHO05D001482 4.1e-16 89.0 113 47.8
CARHR276100 Cardamine hirsuta HOM05D000207 ORTHO05D001482 4.1e-16 89.0 112 45.5
Lj8C40G3 Lonicera japonica HOM05D000207 ORTHO05D001482 5.4e-16 88.6 114 49.1
Manes.14G034300 Manihot esculenta HOM05D000207 ORTHO05D001482 7.1e-16 88.2 110 49.1
BcaC01g02453 Brassica carinata HOM05D000207 ORTHO05D001482 9.2e-16 87.8 113 46.9
Aa31LG11G1280 Aethionema arabicum HOM05D000207 ORTHO05D001482 1.2e-15 87.4 107 49.5
Gohir.A09G044800 Gossypium hirsutum HOM05D000207 ORTHO05D001482 1.2e-15 87.4 110 50.9
THA.LOC104821403 Tarenaya hassleriana HOM05D000207 ORTHO05D001482 1.2e-15 87.4 110 48.2
PGR042G3331 Punica granatum HOM05D000207 ORTHO05D001482 1.6e-15 87.0 115 46.1
arahy.Tifrunner.gnm1.ann1.03H74W Arachis hypogaea HOM05D000207 ORTHO05D001482 2.1e-15 86.7 107 49.5
arahy.Tifrunner.gnm1.ann1.QP8I27 Arachis hypogaea HOM05D000207 ORTHO05D001482 2.1e-15 86.7 107 49.5
Carub.0008s2300 Capsella rubella HOM05D000207 ORTHO05D001482 2.7e-15 86.3 110 45.5
Actinidia13566 Actinidia chinensis HOM05D000207 ORTHO05D001482 6.0e-15 85.1 109 50.5
Lj3g0007217 Lotus japonicus HOM05D000207 ORTHO05D001482 6.0e-15 85.1 108 49.1
Cfa008217 Carpinus fangiana HOM05D000207 ORTHO05D001482 1.0e-14 84.3 111 48.6
ClCG01G005190 Citrullus lanatus HOM05D000207 ORTHO05D001482 1.3e-14 84.0 104 51.0
Sed0002095 Sechium edule HOM05D000207 ORTHO05D001482 1.3e-14 84.0 112 47.3
Atru.chr1.667 Acer truncatum HOM05D000207 ORTHO05D001482 2.3e-14 83.2 106 48.1
Atru.chr1.672 Acer truncatum HOM05D000207 ORTHO05D001482 2.3e-14 83.2 106 48.1
CSS0046907 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D001482 2.3e-14 83.2 107 48.6
Dinv28550 Davidia involucrata HOM05D000207 ORTHO05D001482 2.3e-14 83.2 116 48.3
C02p62100 Brassica napus HOM05D000207 ORTHO05D001482 3.0e-14 82.8 115 47.0
Sabra12G0095900 Salix brachista HOM05D000207 ORTHO05D001482 3.9e-14 82.4 111 50.5
BraA02t09153Z Brassica rapa HOM05D000207 ORTHO05D001482 5.1e-14 82.0 110 46.4
DCAR_014627 Daucus carota HOM05D000207 ORTHO05D001482 5.1e-14 82.0 111 45.9
Eucgr.A02879 Eucalyptus grandis HOM05D000207 ORTHO05D001482 5.1e-14 82.0 117 45.3
COL.COLO4_14149 Corchorus olitorius HOM05D000207 ORTHO05D001482 1.1e-13 80.9 107 51.4
QL09p019127 Quercus lobata HOM05D000207 ORTHO05D001482 1.5e-13 80.5 102 48.0
BolC2t12269H Brassica oleracea HOM05D000207 ORTHO05D001482 4.3e-13 79.0 109 45.9
Glyma.09G232400 Glycine max HOM05D000207 ORTHO05D001482 7.3e-13 78.2 100 48.0
HanXRQChr08g0223871 Helianthus annuus HOM05D000207 ORTHO05D001482 9.6e-13 77.8 109 47.7
PGSC0003DMG400023010 Solanum tuberosum HOM05D000207 ORTHO05D001482 9.6e-13 77.8 114 43.0
Sc13g0007830 Simmondsia chinensis HOM05D000207 ORTHO05D001482 1.2e-12 77.4 119 42.9
Glyma.12G004100 Glycine max HOM05D000207 ORTHO05D001482 1.6e-12 77.0 100 48.0
Nitab4.5_0001548g0020 Nicotiana tabacum HOM05D000207 ORTHO05D001482 1.6e-12 77.0 112 43.8
ECA233G0611 Erigeron canadensis HOM05D000207 ORTHO05D001482 2.1e-12 76.6 114 45.6
Nitab4.5_0000072g0550 Nicotiana tabacum HOM05D000207 ORTHO05D001482 3.6e-12 75.9 111 44.1
Solyc03g083590.3 Solanum lycopersicum HOM05D000207 ORTHO05D001482 3.6e-12 75.9 114 42.1
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 4.7e-12 75.5 108 45.4
ECA238G1620 Erigeron canadensis HOM05D000207 ORTHO05D001482 4.7e-12 75.5 115 42.6
Peaxi162Scf00241g00631 Petunia axillaris HOM05D000207 ORTHO05D001482 4.7e-12 75.5 115 43.5
Sopen03g023400 Solanum pennellii HOM05D000207 ORTHO05D001482 4.7e-12 75.5 114 42.1
CAN.G152.15 Capsicum annuum HOM05D000207 ORTHO05D001482 6.2e-12 75.1 115 44.3
Cc02_g04070 Coffea canephora HOM05D000207 ORTHO05D001482 6.2e-12 75.1 110 43.6
Migut.M00221 Erythranthe guttata HOM05D000207 ORTHO05D001482 6.2e-12 75.1 108 45.4
Lsat_1_v5_gn_8_9241 Lactuca sativa HOM05D000207 ORTHO05D001482 8.1e-12 74.7 97 47.4
Phvul.011G004700 Phaseolus vulgaris HOM05D000207 ORTHO05D001482 1.1e-11 74.3 95 48.4
Actinidia25022 Actinidia chinensis HOM05D000207 ORTHO05D001482 1.8e-11 73.6 42 76.2
HanXRQChr06g0166001 Helianthus annuus HOM05D000207 ORTHO05D001482 1.8e-11 73.6 115 40.9
Lsat_1_v5_gn_2_129560 Lactuca sativa HOM05D000207 ORTHO05D001482 2.4e-11 73.2 114 40.4
VMungo1127G0942 Vigna mungo HOM05D000207 ORTHO05D001482 5.2e-11 72.0 95 44.2
CSS0022169 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D001482 8.9e-11 71.2 113 40.7
CSS0030131 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D001482 8.9e-11 71.2 113 40.7
Ca_20049_v3 Cicer arietinum L. HOM05D000207 ORTHO05D001482 8.9e-11 71.2 108 44.4
Lalb_Chr01g0000201 Lupinus albus HOM05D000207 ORTHO05D001482 1.2e-10 70.9 43 74.4
Oeu028183.1 Olea europaea HOM05D000207 ORTHO05D001482 2.6e-10 69.7 56 60.7
TPR.G39357 Trifolium pratense HOM05D000207 ORTHO05D001482 2.6e-10 69.7 115 42.6
Manes.06G136600 Manihot esculenta HOM05D000207 ORTHO05D001482 3.4e-10 69.3 109 44.0
SGA_v2.0_scaffold44G16542 Striga asiatica HOM05D000207 ORTHO05D001482 7.6e-10 68.2 104 44.2
CDE11G0125 Ceratophyllum demersum HOM05D000207 ORTHO05D001482 2.2e-09 66.6 127 33.9
Ah.13g067150 Amaranthus hybridus HOM05D000207 ORTHO05D001482 1.1e-08 64.3 117 37.6
Oeu021713.2 Olea europaea HOM05D000207 ORTHO05D001482 1.9e-08 63.5 56 57.1
AUR62016180 Chenopodium quinoa HOM05D000207 ORTHO05D001482 4.2e-08 62.4 113 38.9
AUR62035099 Chenopodium quinoa HOM05D000207 ORTHO05D001482 4.2e-08 62.4 113 38.9
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 4.2e-08 62.4 44 65.9
Haze_13841 Corylus avellana HOM05D000207 ORTHO05D001482 5.4e-08 62.0 42 66.7
Hund11808 Selenicereus undatus HOM05D000207 ORTHO05D001482 7.1e-08 61.6 57 54.4
Nn4g26349 Nelumbo nucifera HOM05D000207 ORTHO05D001482 9.3e-08 61.2 114 41.2
Medtr4g035835 Medicago truncatula HOM05D000207 ORTHO05D001482 1.6e-07 60.5 109 41.3
Medtr5g069000 Medicago truncatula HOM05D000207 ORTHO05D001482 2.1e-07 60.1 113 40.7
CSS0008163 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D001482 2.7e-07 59.7 99 40.4
CSS0020226 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D001482 2.7e-07 59.7 99 40.4
Aqoxy7G00681 Aquilegia oxysepala HOM05D000207 ORTHO05D001482 4.6e-07 58.9 136 33.8
MBI13_g00569_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D001482 7.8e-07 58.2 116 38.8
TWI15G0123 Tripterygium wilfordii HOM05D000207 ORTHO05D001482 7.8e-07 58.2 111 37.8
Migut.D01200 Erythranthe guttata HOM05D000207 ORTHO05D001482 1.0e-06 57.8 112 36.6
EL10Ac3g05819 Beta vulgaris HOM05D000207 ORTHO05D001482 1.3e-06 57.4 43 58.1
ATR0829G003 Amborella trichopoda HOM05D000207 ORTHO05D001482 2.3e-06 56.6 113 37.2
FvH4_5g17560 Fragaria vesca HOM05D000207 ORTHO05D001482 2.3e-06 56.6 110 39.1
FAN04G0107 Fragaria x ananassa HOM05D000207 ORTHO05D001482 2.3e-06 56.6 110 39.1
RcHm_v2.0_Chr7g0178091 Rosa chinensis HOM05D000207 ORTHO05D001482 2.3e-06 56.6 110 39.1
Ah.09g232290 Amaranthus hybridus HOM05D000207 ORTHO05D001482 3.9e-06 55.8 101 38.6
FAN08G3461 Fragaria x ananassa HOM05D000207 ORTHO05D001482 3.9e-06 55.8 110 39.1
FAN13G1936 Fragaria x ananassa HOM05D000207 ORTHO05D001482 3.9e-06 55.8 110 39.1
TAR371G0331 Trochodendron aralioides HOM05D000207 ORTHO05D001482 3.9e-06 55.8 124 33.1
Cc04_g06050 Coffea canephora HOM05D000207 ORTHO05D001482 6.6e-06 55.1 116 34.5
Gorai.006G191300 Gossypium raimondii HOM05D000207 ORTHO05D001482 6.6e-06 55.1 101 38.6
SGA_v2.0_scaffold74G24660 Striga asiatica HOM05D000207 ORTHO05D001482 6.6e-06 55.1 112 35.7
SalBow1G6464 Salvia bowleyana HOM05D000207 ORTHO05D001482 8.7e-06 54.7 111 36.0


User provided reference genes

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