Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.0e-78 295.0 145 100.0
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 4.4e-77 291.2 145 99.3
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 2.2e-76 288.9 143 99.3
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.7e-74 282.0 144 97.2
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 6.6e-65 250.8 148 89.2
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 7.1e-51 204.1 134 75.4
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.9e-48 196.1 144 69.4
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 3.6e-47 191.8 137 71.5
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 4.7e-47 191.4 136 69.9
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 4.7e-47 191.4 138 69.6
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 8.1e-47 190.7 137 69.3
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.4e-46 189.9 137 70.8
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 2.4e-46 189.1 144 67.4
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 4.0e-46 188.3 140 67.1
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 6.9e-46 187.6 144 66.7
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 9.0e-46 187.2 137 67.2
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.2e-45 186.8 138 68.1
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 3.4e-45 185.3 136 65.4
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 3.8e-44 181.8 137 68.6
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.2e-43 178.7 141 64.5
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 3.2e-43 178.7 141 64.5
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 1.6e-42 176.4 135 65.2
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 3.5e-42 175.3 110 73.6
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 7.8e-42 174.1 137 67.2
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.8e-42 174.1 140 60.0
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.7e-41 172.9 133 64.7
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.3e-41 172.6 133 64.7
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.3e-41 172.6 139 64.0
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.1e-41 171.4 133 63.9
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 6.6e-41 171.0 127 63.8
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.7e-41 170.6 141 61.7
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.1e-40 170.2 133 62.4
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.9e-40 169.5 130 65.4
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 2.5e-40 169.1 137 63.5
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.3e-39 166.8 139 60.4
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.3e-39 166.8 139 60.4
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 3.6e-39 165.2 139 62.6
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 8.1e-39 164.1 136 63.2
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.3e-38 161.4 145 57.2
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 6.9e-38 161.0 136 60.3
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 1.2e-37 160.2 144 56.2
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.2e-37 160.2 137 61.3
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.0e-37 159.5 140 57.9
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 3.4e-37 158.7 139 61.9
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 2.2e-36 156.0 138 63.0
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.9e-35 152.9 132 58.3
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 3.2e-35 152.1 123 61.0
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 7.1e-35 151.0 138 61.6
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 2.1e-34 149.4 141 56.7
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 4.6e-34 148.3 122 59.8
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 4.6e-34 148.3 132 54.5
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 7.9e-34 147.5 137 56.9
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.0e-33 147.1 147 51.0
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.3e-33 146.7 130 56.9
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.8e-33 146.4 132 55.3
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 1.8e-33 146.4 146 54.1
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.3e-33 146.0 122 59.8
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 1.5e-32 143.3 143 55.2
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 5.6e-32 141.4 148 52.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 9.6e-32 140.6 130 57.7
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 9.6e-32 140.6 148 54.7
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.3e-31 140.2 104 64.4
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.6e-31 139.8 140 55.7
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.1e-31 139.4 157 51.0
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 4.8e-31 138.3 136 47.8
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 4.8e-31 138.3 129 54.3
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.1e-30 137.1 131 56.5
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.4e-30 136.7 122 59.8
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.8e-30 136.3 148 53.4
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 6.9e-30 134.4 147 50.3
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 9.0e-30 134.0 147 50.3
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.5e-29 133.3 132 53.8
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 2.0e-29 132.9 144 51.4
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 2.6e-29 132.5 132 53.8
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.6e-29 132.5 133 55.6
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 4.5e-29 131.7 128 51.6
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 7.6e-29 131.0 134 51.5
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.3e-28 130.2 140 51.4
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.7e-28 129.8 154 50.6
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 2.9e-28 129.0 132 53.8
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.9e-28 129.0 143 48.3
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 2.9e-28 129.0 143 52.4
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 3.8e-28 128.6 113 56.6
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.8e-28 128.6 133 54.9
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 8.4e-28 127.5 131 53.4
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 8.4e-28 127.5 131 53.4
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 1.9e-27 126.3 134 53.0
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 2.4e-27 125.9 129 54.3
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.4e-27 125.9 137 47.4
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 3.2e-27 125.6 133 52.6
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 7.1e-27 124.4 138 52.2
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 9.3e-27 124.0 117 51.3
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.2e-26 123.6 129 53.5
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 1.6e-26 123.2 129 52.7
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.6e-26 123.2 137 48.2
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 2.7e-26 122.5 84 65.5
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 2.7e-26 122.5 99 61.6
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 3.5e-26 122.1 121 56.2
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 7.9e-26 120.9 146 46.6
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.3e-25 120.2 134 49.3
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.8e-25 119.8 142 51.4
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 2.3e-25 119.4 134 49.3
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.9e-25 118.6 132 50.8
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 8.7e-25 117.5 145 48.3
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 8.7e-25 117.5 114 55.3
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.9e-24 116.3 114 54.4
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 3.3e-24 115.5 117 48.7
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.4e-22 110.2 146 45.9
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.5e-21 106.7 129 45.0
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.5e-21 106.7 135 48.1
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 2.0e-21 106.3 79 62.0
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 2.6e-21 105.9 122 49.2
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 2.6e-21 105.9 122 49.2
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 5.8e-21 104.8 132 47.0
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 7.6e-21 104.4 122 48.4
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 7.6e-21 104.4 122 48.4
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 7.6e-21 104.4 122 48.4
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.7e-20 103.2 93 54.8
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 2.9e-20 102.4 143 46.9
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.9e-20 102.4 117 43.6
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 4.9e-20 101.7 126 48.4
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 4.9e-20 101.7 72 77.8
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 8.4e-20 100.9 77 58.4
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.4e-19 100.1 122 47.5
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.9e-19 99.8 122 50.0
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 3.5e-18 95.5 98 52.0
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 4.6e-18 95.1 134 41.8
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.0e-17 94.0 124 44.4
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 1.8e-17 93.2 129 41.1
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 8.7e-17 90.9 121 47.9
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.9e-16 89.7 112 45.5
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 9.7e-16 87.4 121 42.1
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 1.6e-15 86.7 53 66.0
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.2e-15 86.3 123 41.5
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 8.2e-15 84.3 135 41.5
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.0e-13 79.7 121 43.8
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.9e-11 73.2 58 58.6
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.1e-08 63.9 92 42.4
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 2.5e-08 62.8 56 53.6
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 9.7e-08 60.8 148 32.4
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 2.2e-07 59.7 50 56.0


User provided reference genes

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