Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.6e-129 466.1 229 100.0
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.6e-129 464.5 229 99.6
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.0e-128 463.4 229 99.1
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.7e-128 462.6 229 98.3
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 2.8e-126 455.3 229 96.9
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 1.4e-125 453.0 229 96.1
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 3.4e-124 448.4 227 95.2
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 94.3
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 9.9e-124 446.8 227 94.7
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 93.4
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 93.4
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 93.4
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 93.4
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 6.4e-123 444.1 227 93.0
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 6.4e-123 444.1 227 93.4
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 6.4e-123 444.1 229 93.4
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 6.4e-123 444.1 227 93.4
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 93.4
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 92.6
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 92.6
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 93.9
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 93.9
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 93.0
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 93.4
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 3.2e-122 441.8 227 93.4
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 4.2e-122 441.4 227 94.3
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 92.6
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 92.6
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 93.0
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 92.6
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 7.1e-122 440.7 229 92.6
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 92.6
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 91.3
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 1.2e-121 439.9 227 92.5
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 93.4
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 1.2e-121 439.9 227 93.4
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 92.1
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.6e-121 439.5 227 92.1
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 92.6
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 2.1e-121 439.1 229 92.1
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 4.6e-121 438.0 229 92.1
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 4.6e-121 438.0 229 93.4
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 6.0e-121 437.6 227 92.5
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.3e-120 436.4 227 92.1
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.7e-120 436.0 227 92.1
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 1.7e-120 436.0 227 91.6
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.9e-120 434.9 229 89.5
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 5.1e-120 434.5 227 91.6
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 1.1e-119 433.3 227 92.1
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 1.5e-119 433.0 229 91.7
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 2.5e-119 432.2 227 91.6
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 3.3e-119 431.8 229 90.8
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 7.3e-119 430.6 227 90.7
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 7.3e-119 430.6 227 90.7
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 7.3e-119 430.6 229 90.4
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 9.6e-119 430.3 227 89.9
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 1.3e-118 429.9 227 90.3
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 91.2
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 91.2
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 2.8e-118 428.7 227 91.2
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 8.1e-118 427.2 229 90.0
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.4e-117 426.4 229 89.5
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 3.1e-117 425.2 229 88.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 4.0e-117 424.9 227 89.0
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.2e-116 423.3 220 90.9
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.0e-116 422.5 227 89.0
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 3.4e-116 421.8 227 89.9
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 2.2e-115 419.1 229 89.1
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 2.9e-115 418.7 229 89.1
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 4.9e-115 417.9 229 88.2
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.4e-114 415.6 227 88.5
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 3.2e-114 415.2 229 87.3
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 3.2e-114 415.2 229 87.3
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 3.2e-114 415.2 229 87.3
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 3.2e-114 415.2 229 87.3
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 3.2e-114 415.2 229 87.3
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 85.9
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 7.1e-114 414.1 229 86.9
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 1.2e-113 413.3 229 84.3
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 2.1e-113 412.5 229 90.0
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 84.3
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 7.9e-113 410.6 229 85.6
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 7.9e-113 410.6 227 86.3
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 7.9e-113 410.6 229 85.6
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 3.9e-112 408.3 229 85.6
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 6.7e-112 407.5 238 84.0
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 3.3e-111 405.2 226 84.1
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 5.6e-111 404.4 229 83.4
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 7.4e-111 404.1 229 83.4
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 9.6e-111 403.7 229 83.4
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 9.6e-111 403.7 226 83.6
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 2.8e-110 402.1 227 84.6
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.8e-110 402.1 229 83.0
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 3.7e-110 401.7 227 84.1
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 8.1e-110 400.6 256 78.1
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.1e-109 400.2 229 83.0
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 4.5e-108 394.8 202 94.1
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 3.8e-107 391.7 227 80.6
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 1.4e-106 389.8 202 92.6
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 9.3e-106 387.1 203 91.6
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 8.7e-104 380.6 201 91.5
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.9e-103 379.4 229 81.2
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 7.4e-103 377.5 227 77.5
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 1.4e-101 373.2 229 78.2
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 2.6e-100 369.0 200 85.0
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 4.5e-100 368.2 200 89.0
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 5.8e-100 367.9 190 94.7
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.0e-99 367.1 229 73.4
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.0e-99 367.1 229 73.4
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 3.8e-99 365.2 191 92.7
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 4.9e-99 364.8 227 73.1
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 6.5e-99 364.4 190 92.1
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 5.5e-98 361.3 233 78.1
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 9.3e-98 360.5 219 80.8
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.6e-97 359.8 250 74.4
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 5.1e-96 354.8 191 90.6
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 2.5e-95 352.4 229 74.2
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 5.7e-95 351.3 187 92.5
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 1.6e-94 349.7 185 93.0
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 3.7e-94 348.6 185 90.8
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 4.8e-94 348.2 227 76.7
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 1.9e-90 336.3 226 68.6
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 6.7e-88 327.8 226 70.8
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.2e-84 317.0 355 51.3
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 2.0e-84 316.2 160 95.6
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 1.1e-82 310.5 164 92.1
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.6e-76 289.3 162 85.8
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.2e-70 269.6 162 77.8
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.7e-59 233.4 120 92.5
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.2e-58 228.8 131 80.9
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 2.7e-57 226.1 154 68.2
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 7.0e-37 158.3 140 59.3
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.9e-27 125.9 69 84.1
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 4.4e-23 112.5 62 79.0
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 5.1e-19 99.0 152 42.1
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 3.3e-18 96.3 124 47.6
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.0e-15 87.0 81 55.6
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.0e-15 87.0 45 86.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 52 69.2
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.1e-12 77.0 79 50.6
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 5.1e-11 72.4 49 67.3
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.9e-10 70.5 82 52.4
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 4.4e-07 59.3 26 100.0


User provided reference genes

Program Settings