Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 0.0e+00 1248.4 653 100.0
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 0.0e+00 1188.7 655 96.2
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 0.0e+00 1187.9 655 95.0
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 0.0e+00 1119.0 660 88.8
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 0.0e+00 1112.8 620 93.9
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 6.6e-282 973.8 652 78.2
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 1.4e-279 966.1 658 77.7
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 5.1e-274 947.6 645 76.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 2.0e-262 909.1 662 72.2
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 1.4e-260 902.9 654 72.0
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 3.1e-255 885.2 654 71.3
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 6.9e-255 884.0 657 71.1
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 3.8e-245 851.7 650 70.3
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 3.0e-242 842.0 639 68.5
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.5e-238 829.7 647 68.6
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 2.6e-238 828.9 661 66.3
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.6e-238 828.9 650 67.4
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 6.5e-237 824.3 631 68.1
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 6.5e-237 824.3 650 67.1
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 1.1e-236 823.5 648 67.9
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 5.5e-236 821.2 649 66.1
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.2e-235 820.1 656 67.2
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 6.1e-235 817.8 634 67.7
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 2.3e-234 815.8 657 66.2
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 8.8e-234 813.9 654 67.4
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 9.7e-233 810.4 647 67.4
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 3.7e-232 808.5 653 65.5
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.1e-231 807.0 667 66.0
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 1.8e-231 806.2 652 66.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 1.0e-229 800.4 663 64.4
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 2.9e-229 798.9 660 64.4
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 2.9e-229 798.9 660 64.4
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.0e-226 790.4 663 62.7
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 2.3e-226 789.3 662 64.4
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 4.0e-226 788.5 649 63.6
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 8.8e-226 787.3 663 65.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 2.4e-223 779.2 649 63.0
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 3.1e-223 778.9 632 66.8
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 5.3e-223 778.1 643 64.7
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 7.0e-223 777.7 671 63.2
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 2.0e-222 776.2 662 64.2
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.0e-222 776.2 661 64.3
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 4.5e-222 775.0 668 63.3
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 1.5e-220 770.0 651 63.6
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 4.2e-220 768.5 650 62.3
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.2e-219 766.9 660 63.6
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.2e-219 766.9 655 61.1
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 5.7e-217 758.1 656 62.3
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 2.4e-215 752.7 641 62.6
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 2.4e-215 752.7 654 63.9
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 7.0e-215 751.1 647 62.3
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 2.3e-213 746.1 654 62.8
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 7.2e-212 741.1 659 62.7
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 9.5e-212 740.7 650 61.5
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 2.1e-211 739.6 669 60.5
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 3.6e-211 738.8 656 62.8
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.0e-210 737.3 658 59.3
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.5e-209 733.4 685 60.6
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 5.7e-209 731.5 644 61.2
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 3.7e-208 728.8 647 59.7
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 4.9e-208 728.4 662 60.7
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 1.8e-207 726.5 675 59.3
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 3.1e-207 725.7 642 60.9
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 4.1e-207 725.3 646 60.1
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.7e-206 722.6 644 60.9
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 8.6e-205 717.6 698 58.6
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.9e-204 716.5 647 60.4
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.2e-203 713.8 604 63.6
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 3.6e-203 712.2 526 71.7
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 4.7e-203 711.8 646 60.1
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.8e-202 709.9 644 58.1
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 2.3e-202 709.5 645 60.0
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.5e-201 706.8 651 60.2
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 3.4e-201 705.7 641 61.0
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 6.4e-200 701.4 648 61.3
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.4e-199 699.5 656 57.5
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 9.2e-199 697.6 655 57.4
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 7.8e-198 694.5 538 66.9
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 3.9e-197 692.2 645 58.4
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.1e-196 690.6 655 56.9
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.8e-195 686.0 566 65.5
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.4e-191 671.8 589 62.6
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 1.9e-188 663.3 679 55.5
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 1.2e-187 660.6 648 56.0
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 3.6e-187 659.1 492 68.9
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 7.8e-182 641.3 656 56.1
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 4.3e-180 635.6 649 56.1
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 4.6e-174 615.5 680 52.2
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 2.8e-171 606.3 495 63.8
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 3.4e-169 599.4 666 52.1
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.6e-166 590.5 651 51.5
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 2.1e-166 590.1 541 62.3
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 4.3e-164 582.4 499 59.1
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.1e-158 563.5 600 54.3
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 7.4e-156 555.1 697 47.5
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 9.0e-154 548.1 544 56.6
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.5e-153 547.4 485 63.1
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.6e-137 493.4 644 46.3
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 4.6e-134 482.6 440 62.7
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.2e-128 463.8 534 51.3
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 4.5e-113 412.9 385 63.6
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 5.5e-111 406.0 746 36.9
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 4.7e-110 402.9 289 75.4
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 4.0e-109 399.8 632 40.5
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 7.2e-103 379.0 596 42.1
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 3.6e-102 376.7 289 64.7
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 5.2e-101 372.9 336 65.2
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 8.3e-99 365.5 292 68.8
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 8.0e-94 349.0 288 68.4
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 2.7e-89 334.0 646 37.5
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 7.5e-84 315.8 341 52.2
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 5.0e-80 303.1 516 39.1
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.6e-79 299.7 428 49.8
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.5e-71 275.0 331 48.9
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.7e-64 251.5 206 68.9
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.4e-61 241.9 181 69.1
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 2.9e-59 234.2 379 42.7
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 2.1e-57 228.0 383 44.1
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 4.4e-52 210.3 190 60.0
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.2e-49 202.2 149 65.8
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 3.5e-49 200.7 155 65.2
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 2.5e-39 167.9 121 63.6
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.4e-34 152.1 208 42.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 2.3e-32 144.8 682 28.2
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 8.7e-32 142.9 177 48.6
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 3.2e-18 97.8 125 50.4
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.8e-16 92.0 92 54.3
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.0e-16 91.3 58 82.8
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 1.1e-15 89.4 110 48.2
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 3.3e-15 87.8 161 39.1
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 7.4e-15 86.7 63 68.3
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 8.2e-14 83.2 99 49.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.4e-13 82.4 57 70.2
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 1.8e-13 82.0 110 45.5
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 9.1e-13 79.7 63 63.5
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 7.7e-12 76.6 55 70.9
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 7.4e-07 60.1 105 36.2


User provided reference genes

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