Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3455 Fragaria x ananassa HOM05D002804 ORTHO05D011158 1.6e-155 552.7 283 100.0
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-52 211.1 104 99.0
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.3e-52 209.1 104 99.0
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.6e-52 208.0 104 97.1
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.0e-46 188.7 104 86.5
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 6.6e-45 185.3 104 83.7
FAN17G0365 Fragaria x ananassa HOM05D012050 ORTHO05D011158 2.1e-43 180.3 103 94.2
RcHm_v2.0_Chr3g0494581 Rosa chinensis HOM05D000017 ORTHO05D011158 2.6e-41 173.3 159 63.5
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 2.1e-38 163.7 104 76.9
FAN19G0953 Fragaria x ananassa HOM05D001008 ORTHO05D011158 3.5e-38 162.9 110 83.6
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-36 157.5 104 73.1
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-36 156.8 104 73.1
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 3.3e-36 156.4 104 72.1
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 3.3e-36 156.4 104 73.1
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.3e-36 156.4 104 73.1
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 9.6e-36 154.8 104 71.2
FvH4_3g22341 Fragaria vesca HOM05D000017 ORTHO05D011158 2.1e-35 153.7 165 57.0
FAN04G0028 Fragaria x ananassa HOM05D012050 ORTHO05D011158 2.1e-35 153.7 103 83.5
FAN09G3078 Fragaria x ananassa HOM05D012050 ORTHO05D011158 2.1e-35 153.7 103 83.5
FvH4_6g34392 Fragaria vesca HOM05D012050 ORTHO05D011158 2.0e-33 147.1 125 67.2
FAN03G0905 Fragaria x ananassa HOM05D007608 ORTHO05D009451 4.2e-31 139.4 159 54.7
RcHm_v2.0_Chr7g0237981 Rosa chinensis HOM05D000017 ORTHO05D011158 6.7e-29 132.1 167 51.5
FAN06G0219 Fragaria x ananassa HOM05D012050 ORTHO05D011158 1.1e-26 124.8 135 59.3
FAN23G2534 Fragaria x ananassa HOM05D000017 ORTHO05D000013 1.8e-26 124.0 81 75.3
FvH4_5g32070 Fragaria vesca HOM05D002804 ORTHO05D003755 7.6e-25 118.6 69 81.2
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-24 117.1 69 79.7
RcHm_v2.0_Chr7g0235881 Rosa chinensis HOM05D002804 ORTHO05D003755 4.9e-24 115.9 84 69.0
FAN21G3233 Fragaria x ananassa HOM05D007608 ORTHO05D011158 2.5e-23 113.6 145 46.2
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.2e-23 113.2 69 78.3
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 3.2e-23 113.2 96 58.3
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 9.3e-23 111.7 96 58.3
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 9.3e-23 111.7 104 57.7
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 9.3e-23 111.7 96 58.3
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-22 111.3 100 56.0
FAN12G1176 Fragaria x ananassa HOM05D012050 ORTHO05D011158 3.5e-22 109.8 75 85.3
FAN12G2575 Fragaria x ananassa HOM05D012050 ORTHO05D011158 3.5e-22 109.8 75 85.3
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 3.5e-22 109.8 104 56.7
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 4.6e-22 109.4 104 53.8
FAN02G4440 Fragaria x ananassa HOM05D012050 ORTHO05D011158 7.9e-22 108.6 61 96.7
FAN10G4356 Fragaria x ananassa HOM05D012050 ORTHO05D004881 1.3e-21 107.8 81 81.5
FAN15G0248 Fragaria x ananassa HOM05D012050 ORTHO05D011158 1.3e-21 107.8 71 84.5
FvH4_3g34182 Fragaria vesca HOM05D000017 ORTHO05D009451 1.1e-20 104.8 128 47.7
FAN09G3556 Fragaria x ananassa HOM05D012050 ORTHO05D011158 4.3e-20 102.8 129 53.5
FAN18G2126 Fragaria x ananassa HOM05D018985 ORTHO05D011158 5.7e-20 102.4 56 98.2
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 5.7e-20 102.4 103 53.4
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-19 101.3 98 57.1
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.7e-19 99.8 100 54.0
FAN20G0575 Fragaria x ananassa HOM05D008633 ORTHO05D011158 3.7e-19 99.8 129 49.6
FAN13G1238 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-19 99.4 70 68.6
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 6.3e-19 99.0 100 54.0
FAN18G1140 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.3e-19 99.0 97 54.6
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 8.2e-19 98.6 104 54.8
FvH4_5g35330 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-18 97.4 104 50.0
FAN20G0348 Fragaria x ananassa HOM05D012050 ORTHO05D011158 1.8e-18 97.4 86 67.4
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-18 97.1 97 52.6
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-18 97.1 104 49.0
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 3.1e-18 96.7 104 49.0
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 4.1e-18 96.3 95 48.4
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.3e-18 95.9 104 50.0
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.3e-18 95.9 104 50.0
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 6.9e-18 95.5 105 51.4
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.5e-17 94.4 104 50.0
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.4e-17 93.2 104 48.1
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 4.5e-17 92.8 93 52.7
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 4.5e-17 92.8 96 52.1
FAN20G3110 Fragaria x ananassa HOM05D008633 ORTHO05D011158 5.9e-17 92.4 136 44.9
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-17 92.0 95 46.3
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-16 90.5 69 66.7
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 2.9e-16 90.1 95 46.3
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-16 90.1 95 46.3
FvH4_2g12831 Fragaria vesca HOM05D007608 ORTHO05D045979 3.8e-16 89.7 148 43.9
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.0e-16 89.4 95 45.3
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.0e-16 89.4 95 45.3
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 5.0e-16 89.4 104 51.0
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.5e-16 88.6 68 67.6
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-15 87.4 101 51.5
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 3.2e-15 86.7 93 49.5
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 5.5e-15 85.9 69 65.2
FAN08G1082 Fragaria x ananassa HOM05D012050 ORTHO05D011158 7.2e-15 85.5 115 48.7
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.4e-15 85.1 67 65.7
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-14 84.3 95 43.2
FAN10G1430 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-14 84.0 80 47.5
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 2.7e-14 83.6 88 51.1
FAN08G2179 Fragaria x ananassa HOM05D008633 ORTHO05D011158 3.6e-14 83.2 110 50.9
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.9e-14 82.0 95 43.2
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 1.0e-13 81.6 90 48.9
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 1.0e-13 81.6 90 48.9
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-13 80.5 95 41.1
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-13 80.5 69 52.2
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-13 80.5 107 45.8
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-13 80.5 75 54.7
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.9e-13 79.7 80 45.0
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 6.7e-13 79.0 97 48.5
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.7e-13 79.0 98 42.9
FAN15G1085 Fragaria x ananassa HOM05D008633 ORTHO05D011158 1.1e-12 78.2 96 50.0
FAN25G3079 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-12 77.8 47 80.9
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-12 77.8 70 57.1
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-12 77.8 97 44.3
FAN24G2285 Fragaria x ananassa HOM05D007608 ORTHO05D009451 2.5e-12 77.0 98 51.0
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 3.3e-12 76.6 104 42.3
FAN18G3290 Fragaria x ananassa HOM05D007608 ORTHO05D011158 5.7e-12 75.9 137 43.1
FvH4_6g10601 Fragaria vesca HOM05D000017 ORTHO05D011158 2.8e-11 73.6 83 56.6
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.8e-11 73.6 46 78.3
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 6.3e-11 72.4 89 47.2
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.3e-11 72.4 92 44.6
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 6.3e-11 72.4 92 43.5
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.8e-10 70.9 70 48.6
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 1.8e-10 70.9 91 40.7
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 2.4e-10 70.5 93 39.8
FAN12G0821 Fragaria x ananassa HOM05D012050 ORTHO05D011158 2.4e-10 70.5 58 69.0
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 2.4e-10 70.5 55 56.4
FvH4_5g31001 Fragaria vesca HOM05D002804 ORTHO05D003755 3.1e-10 70.1 81 48.1
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 4.1e-10 69.7 92 43.5
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.1e-10 69.7 92 43.5
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 4.1e-10 69.7 92 41.3
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 4.1e-10 69.7 95 44.2
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 5.3e-10 69.3 104 37.5
RcHm_v2.0_Chr2g0087761 Rosa chinensis HOM05D012050 ORTHO05D011158 5.3e-10 69.3 127 41.7
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 6.9e-10 68.9 70 50.0
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.2e-09 68.2 91 40.7
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 2.0e-09 67.4 95 37.9
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 3.4e-09 66.6 79 43.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 3.4e-09 66.6 70 47.1
FAN26G2959 Fragaria x ananassa HOM05D014743 ORTHO05D014641 7.7e-09 65.5 71 45.1
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 7.7e-09 65.5 62 53.2
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.7e-08 64.3 70 48.6
RcHm_v2.0_Chr7g0236041 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-08 64.3 70 50.0
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 2.2e-08 63.9 91 38.5
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 2.2e-08 63.9 91 38.5
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-08 63.5 107 40.2
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 2.9e-08 63.5 96 38.5
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.8e-08 63.2 70 45.7
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 3.8e-08 63.2 107 40.2
FAN05G1687 Fragaria x ananassa HOM05D007608 ORTHO05D011158 3.8e-08 63.2 61 60.7
RcHm_v2.0_Chr3g0464951 Rosa chinensis HOM05D000017 ORTHO05D000013 3.8e-08 63.2 71 52.1
Ca_03485_v3 Cicer arietinum L. HOM05D008773 ORTHO05D010496 5.0e-08 62.8 94 37.2
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 5.0e-08 62.8 79 41.8
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 6.5e-08 62.4 91 37.4
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 8.5e-08 62.0 70 47.1
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-07 61.6 92 40.2
FAN04G3233 Fragaria x ananassa HOM05D002804 ORTHO05D025426 1.1e-07 61.6 81 40.7
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 1.1e-07 61.6 69 46.4
Nitab4.5_0001931g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 3.2e-07 60.1 78 39.7
Nitab4.5_0003744g0030 Nicotiana tabacum HOM05D000017 ORTHO05D000308 3.2e-07 60.1 135 30.4
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 3.2e-07 60.1 92 37.0
FvH4_2g18400 Fragaria vesca HOM05D008633 ORTHO05D019156 4.2e-07 59.7 84 50.0
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 4.2e-07 59.7 70 45.7
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 7.2e-07 58.9 70 44.3
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 7.2e-07 58.9 70 44.3
Ca_14918_v3 Cicer arietinum L. HOM05D000017 ORTHO05D000013 9.4e-07 58.5 94 36.2
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-06 58.2 70 45.7
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-06 57.8 95 36.8
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 1.6e-06 57.8 95 36.8
FvH4_5g32080 Fragaria vesca HOM05D002804 ORTHO05D029665 2.1e-06 57.4 100 32.0
FAN15G1198 Fragaria x ananassa HOM05D008633 ORTHO05D011158 2.1e-06 57.4 83 49.4
Nitab4.5_0011237g0020 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.1e-06 57.4 86 36.0
Rhsim03G0174600 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.7e-06 57.0 95 37.9
RcHm_v2.0_Chr6g0255251 Rosa chinensis HOM05D014743 ORTHO05D014641 2.7e-06 57.0 89 41.6
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 3.6e-06 56.6 73 38.4
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 3.6e-06 56.6 70 45.7
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.6e-06 56.6 70 45.7
Rhsim02G0019500 Rhododendron simsii HOM05D000017 ORTHO05D000013 3.6e-06 56.6 85 42.4
FAN15G1591 Fragaria x ananassa HOM05D007608 ORTHO05D011158 4.7e-06 56.2 74 51.4
Rhsim09G0049900 Rhododendron simsii HOM05D000017 ORTHO05D000013 4.7e-06 56.2 150 33.3
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 4.7e-06 56.2 94 34.0
FAN24G0517 Fragaria x ananassa HOM05D014743 ORTHO05D014641 6.1e-06 55.8 68 44.1
FAN24G1694 Fragaria x ananassa HOM05D008633 ORTHO05D019156 6.1e-06 55.8 86 46.5
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 7.9e-06 55.5 70 41.4
ECA234G0427 Erigeron canadensis HOM05D000017 ORTHO05D000013 7.9e-06 55.5 86 41.9
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 7.9e-06 55.5 91 34.1


User provided reference genes

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