Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.7e-30 133.7 70 100.0
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 4.1e-28 127.5 70 95.7
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 4.1e-28 127.5 70 95.7
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.3e-28 127.1 70 97.1
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 1.7e-26 122.1 70 88.6
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 9.4e-25 116.3 70 82.9
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 2.7e-24 114.8 70 81.4
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 3.6e-24 114.4 70 81.4
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 7.9e-24 113.2 70 78.6
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.8e-23 112.1 70 82.9
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 5.1e-23 110.5 70 75.7
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 5.1e-23 110.5 69 76.8
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.1e-22 109.4 68 77.9
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 4.4e-22 107.5 70 74.3
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 5.7e-22 107.1 68 77.9
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 5.7e-22 107.1 68 79.4
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 5.7e-22 107.1 61 85.2
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 7.4e-22 106.7 68 77.9
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 2.8e-21 104.8 68 76.5
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 3.7e-21 104.4 70 72.9
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 4.8e-21 104.0 68 75.0
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 6.3e-21 103.6 68 76.5
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.4e-20 102.4 61 80.3
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 1.8e-20 102.1 70 71.4
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 4.1e-20 100.9 69 71.0
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 5.3e-20 100.5 68 70.6
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.2e-19 99.4 69 72.5
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 2.6e-19 98.2 70 64.3
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 4.5e-19 97.4 70 70.0
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 5.9e-19 97.1 68 72.1
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.7e-18 95.5 70 68.6
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 1.7e-18 95.5 70 68.6
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 2.9e-18 94.7 67 70.1
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 3.8e-18 94.4 67 74.6
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 6.5e-18 93.6 70 65.7
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 6.5e-18 93.6 70 65.7
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 6.5e-18 93.6 70 67.1
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 6.5e-18 93.6 70 67.1
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.1e-17 92.8 67 73.1
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 1.9e-17 92.0 70 62.9
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.9e-17 92.0 68 64.7
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 7.2e-17 90.1 68 67.6
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 9.4e-17 89.7 70 65.7
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 1.2e-16 89.4 70 62.9
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.1e-16 88.6 68 66.2
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 2.7e-16 88.2 61 72.1
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 1.8e-15 85.5 68 64.7
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 3.9e-15 84.3 67 62.7
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 5.2e-15 84.0 70 60.0
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 8.8e-15 83.2 68 61.8
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 1.1e-14 82.8 70 62.9
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 1.1e-14 82.8 70 62.9
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 2.6e-14 81.6 66 57.6
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 5.7e-14 80.5 70 55.7
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 5.7e-14 80.5 70 61.4
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 7.4e-14 80.1 67 64.2
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 9.7e-14 79.7 70 57.1
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 1.3e-13 79.3 66 60.6
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 1.7e-13 79.0 70 57.1
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 2.2e-13 78.6 61 65.6
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 6.3e-13 77.0 74 63.5
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 1.1e-12 76.3 70 52.9
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 1.8e-12 75.5 66 59.1
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 2.4e-12 75.1 68 60.3
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 4.1e-12 74.3 66 56.1
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 4.1e-12 74.3 53 64.2
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.3e-12 73.9 71 56.3
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 7.0e-12 73.6 68 57.4
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.2e-11 72.8 71 56.3
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 2.0e-11 72.0 68 60.3
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 3.5e-11 71.2 65 58.5
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 7.7e-11 70.1 70 52.9
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 1.0e-10 69.7 65 52.3
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 1.0e-10 69.7 70 52.9
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 1.7e-10 68.9 66 54.5
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 2.9e-10 68.2 72 52.8
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 3.8e-10 67.8 74 45.9
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 4.2e-09 64.3 64 51.6
Thhalv10012203m.g Eutrema salsugineum HOM05D007950 ORTHO05D009951 1.0e-07 59.7 62 50.0
Os06g0686900 Oryza sativa ssp. japonica HOM05D018973 ORTHO05D009951 4.0e-07 57.8 68 47.1
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 5.2e-07 57.4 50 60.0


User provided reference genes

Program Settings