Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3333 Fragaria x ananassa HOM05D002541 ORTHO05D002717 2.6e-42 174.9 82 100.0
FAN19G1683 Fragaria x ananassa HOM05D002541 ORTHO05D002717 2.1e-15 85.5 40 95.0
FAN28G2356 Fragaria x ananassa HOM05D002541 ORTHO05D002717 1.3e-14 82.8 40 95.0
RcHm_v2.0_Chr2g0109921 Rosa chinensis HOM05D002541 ORTHO05D002717 5.1e-14 80.9 40 92.5
Duzib264G1187 Durio zibethinus HOM05D002541 ORTHO05D002717 8.7e-14 80.1 40 87.5
FAN23G1802 Fragaria x ananassa HOM05D002541 ORTHO05D002717 1.9e-13 79.0 40 92.5
Ciclev10026757m.g Citrus clementina HOM05D002541 ORTHO05D002717 4.3e-13 77.8 40 87.5
Prupe.6G210400 Prunus persica HOM05D002541 ORTHO05D002717 4.3e-13 77.8 40 90.0
Duzib187G1214 Durio zibethinus HOM05D002541 ORTHO05D002717 1.6e-12 75.9 40 85.0
Gohir.D11G214000 Gossypium hirsutum HOM05D002541 ORTHO05D002717 1.6e-12 75.9 40 82.5
GSVIVG01003715001 Vitis vinifera HOM05D002541 ORTHO05D002717 2.1e-12 75.5 41 85.4
Gorai.007G229800 Gossypium raimondii HOM05D002541 ORTHO05D002717 3.7e-12 74.7 40 82.5
Actinidia36383 Actinidia chinensis HOM05D002541 ORTHO05D002717 4.8e-12 74.3 40 80.0
Thecc.01G083100 Theobroma cacao HOM05D002541 ORTHO05D002717 4.8e-12 74.3 40 82.5
Atru.chr3.1143 Acer truncatum HOM05D002541 ORTHO05D002717 1.4e-11 72.8 40 85.0
Atru.chr3.1162 Acer truncatum HOM05D002541 ORTHO05D002717 1.4e-11 72.8 40 85.0
Gorai.007G057900 Gossypium raimondii HOM05D002541 ORTHO05D002717 1.4e-11 72.8 40 80.0
Cfa006825 Carpinus fangiana HOM05D002541 ORTHO05D002717 1.8e-11 72.4 40 80.0
Haze_03938 Corylus avellana HOM05D002541 ORTHO05D002717 1.8e-11 72.4 40 80.0
Gohir.A11G049700 Gossypium hirsutum HOM05D002541 ORTHO05D002717 2.4e-11 72.0 40 80.0
Gohir.A11G209300 Gossypium hirsutum HOM05D002541 ORTHO05D002717 2.4e-11 72.0 40 80.0
Gohir.A12G082100 Gossypium hirsutum HOM05D002541 ORTHO05D002717 5.3e-11 70.9 48 64.6
MD01G1045700 Malus domestica HOM05D002541 ORTHO05D002717 5.3e-11 70.9 40 80.0
Gohir.D12G079500 Gossypium hirsutum HOM05D002541 ORTHO05D002717 9.0e-11 70.1 48 64.6
Gorai.008G088100 Gossypium raimondii HOM05D002541 ORTHO05D002717 9.0e-11 70.1 48 64.6
MD15G1306100 Malus domestica HOM05D002541 ORTHO05D002717 9.0e-11 70.1 40 82.5
Cpa.g.sc129.22 Carica papaya HOM05D002541 ORTHO05D002717 1.2e-10 69.7 41 75.6
Gohir.D11G053200 Gossypium hirsutum HOM05D002541 ORTHO05D002717 1.5e-10 69.3 40 77.5
vmacro18034 Vaccinium macrocarpon HOM05D002541 ORTHO05D002717 1.5e-10 69.3 40 75.0
CSS0000050 Camellia sinensis var. sinensis HOM05D002541 ORTHO05D002717 2.0e-10 68.9 40 75.0
CSS0028434 Camellia sinensis var. sinensis HOM05D002541 ORTHO05D002717 2.0e-10 68.9 40 75.0
CANSAT01G1647 Cannabis sativa HOM05D002541 ORTHO05D002717 2.0e-10 68.9 40 72.5
QL06p037511 Quercus lobata HOM05D002541 ORTHO05D002717 2.0e-10 68.9 41 78.0
Manes.12G120900 Manihot esculenta HOM05D002541 ORTHO05D002717 2.2e-09 65.5 44 72.7
CiPaw.07G041900 Carya illinoinensis HOM05D002541 ORTHO05D002717 2.9e-09 65.1 41 80.5
COL.COLO4_11674 Corchorus olitorius HOM05D002541 ORTHO05D002717 2.9e-09 65.1 35 85.7
TWI74G0347 Tripterygium wilfordii HOM05D002541 ORTHO05D002717 2.9e-09 65.1 40 72.5
Actinidia11928 Actinidia chinensis HOM05D002541 ORTHO05D002717 3.8e-09 64.7 40 72.5
Nn1g05767 Nelumbo nucifera HOM05D002541 ORTHO05D002717 3.8e-09 64.7 32 87.5
Rhsim08G0088700 Rhododendron simsii HOM05D002541 ORTHO05D002717 3.8e-09 64.7 40 67.5
Actinidia22782 Actinidia chinensis HOM05D002541 ORTHO05D002717 5.0e-09 64.3 40 72.5
Cc07_g07790 Coffea canephora HOM05D002541 ORTHO05D002717 6.5e-09 63.9 41 73.2
Thhalv10005095m.g Eutrema salsugineum HOM05D002541 ORTHO05D002717 6.5e-09 63.9 45 66.7
Nitab4.5_0000576g0040 Nicotiana tabacum HOM05D002541 ORTHO05D002717 8.4e-09 63.5 35 77.1
PGSC0003DMG400030663 Solanum tuberosum HOM05D002541 ORTHO05D002717 8.4e-09 63.5 51 52.9
CSS0016264 Camellia sinensis var. sinensis HOM05D002541 ORTHO05D002717 1.1e-08 63.2 35 74.3
CSS0027224 Camellia sinensis var. sinensis HOM05D002541 ORTHO05D002717 1.1e-08 63.2 35 74.3
TWI77G0252 Tripterygium wilfordii HOM05D002541 ORTHO05D002717 1.1e-08 63.2 40 72.5
Aa31LG1G16410 Aethionema arabicum HOM05D002541 ORTHO05D002717 1.4e-08 62.8 45 66.7
BcaC01g02803 Brassica carinata HOM05D002541 ORTHO05D002717 1.4e-08 62.8 45 66.7
C03p60100 Brassica napus HOM05D002541 ORTHO05D002717 1.4e-08 62.8 45 66.7
BolC3t18273H Brassica oleracea HOM05D002541 ORTHO05D002717 1.4e-08 62.8 45 66.7
Solyc02g091700.3 Solanum lycopersicum HOM05D002541 ORTHO05D002717 1.4e-08 62.8 51 52.9
Sopen02g036310 Solanum pennellii HOM05D002541 ORTHO05D002717 1.4e-08 62.8 51 52.9
BcaC01g02848 Brassica carinata HOM05D002541 ORTHO05D002717 2.5e-08 62.0 45 64.4
vmacro05479 Vaccinium macrocarpon HOM05D002541 ORTHO05D002717 2.5e-08 62.0 41 73.2
BraA09t36562Z Brassica rapa HOM05D002541 ORTHO05D002717 3.2e-08 61.6 45 64.4
AL8G43250 Arabidopsis lyrata HOM05D002541 ORTHO05D002717 4.2e-08 61.2 45 66.7
CiPaw.08G146700 Carya illinoinensis HOM05D002541 ORTHO05D002717 4.2e-08 61.2 45 71.1
Eucgr.I00609 Eucalyptus grandis HOM05D002541 ORTHO05D002717 4.2e-08 61.2 41 75.6
Nitab4.5_0000576g0020 Nicotiana tabacum HOM05D002541 ORTHO05D002717 5.5e-08 60.8 33 78.8
BcaC03g18347 Brassica carinata HOM05D002541 ORTHO05D002717 7.1e-08 60.5 45 64.4
A02p44030 Brassica napus HOM05D002541 ORTHO05D002717 7.1e-08 60.5 45 64.4
C02p64260 Brassica napus HOM05D002541 ORTHO05D002717 7.1e-08 60.5 45 64.4
BraA02t09326Z Brassica rapa HOM05D002541 ORTHO05D002717 7.1e-08 60.5 45 64.4
Potri.002G108100 Populus trichocarpa HOM05D002541 ORTHO05D002717 7.1e-08 60.5 40 65.0
Potri.019G055500 Populus trichocarpa HOM05D002541 ORTHO05D002717 7.1e-08 60.5 40 70.0
Dinv36982 Davidia involucrata HOM05D002541 ORTHO05D002717 9.3e-08 60.1 41 70.7
Nitab4.5_0000036g0350 Nicotiana tabacum HOM05D002541 ORTHO05D002717 9.3e-08 60.1 43 67.4
Nitab4.5_0000036g0360 Nicotiana tabacum HOM05D002541 ORTHO05D002717 9.3e-08 60.1 33 78.8
SalBow3G4005 Salvia bowleyana HOM05D002541 ORTHO05D002717 9.3e-08 60.1 41 65.9
THA.LOC104798694 Tarenaya hassleriana HOM05D002541 ORTHO05D002717 9.3e-08 60.1 45 64.4
THA.LOC104805043 Tarenaya hassleriana HOM05D002541 ORTHO05D002717 9.3e-08 60.1 45 64.4
THA.LOC104806025 Tarenaya hassleriana HOM05D002541 ORTHO05D002717 9.3e-08 60.1 45 64.4
Aqoxy6G00625 Aquilegia oxysepala HOM05D002541 ORTHO05D002717 1.2e-07 59.7 62 51.6
MSTRG.23628 Avicennia marina HOM05D002541 ORTHO05D002717 1.2e-07 59.7 41 65.9
BcaB04g20023 Brassica carinata HOM05D002541 ORTHO05D002717 1.2e-07 59.7 45 64.4
AUR62005883 Chenopodium quinoa HOM05D002541 ORTHO05D002717 1.2e-07 59.7 42 69.0
AUR62032876 Chenopodium quinoa HOM05D002541 ORTHO05D002717 1.2e-07 59.7 42 69.0
AT5G65660 Arabidopsis thaliana HOM05D002541 ORTHO05D002717 1.6e-07 59.3 45 64.4
EL10Ac6g13299 Beta vulgaris HOM05D002541 ORTHO05D002717 1.6e-07 59.3 42 66.7
A06p32490 Brassica napus HOM05D002541 ORTHO05D002717 1.6e-07 59.3 45 64.4
BraA06t26173Z Brassica rapa HOM05D002541 ORTHO05D002717 1.6e-07 59.3 45 64.4
Ca_22632_v3 Cicer arietinum L. HOM05D002541 ORTHO05D002717 1.6e-07 59.3 42 64.3
Dinv26997 Davidia involucrata HOM05D002541 ORTHO05D002717 1.6e-07 59.3 41 70.7
Medtr8g067590 Medicago truncatula HOM05D002541 ORTHO05D002717 1.6e-07 59.3 43 60.5
THA.LOC104798483 Tarenaya hassleriana HOM05D002541 ORTHO05D002717 1.6e-07 59.3 46 60.9
BcaC04g23254 Brassica carinata HOM05D002541 ORTHO05D002717 2.1e-07 58.9 45 62.2
C09p10610 Brassica napus HOM05D002541 ORTHO05D002717 2.1e-07 58.9 45 62.2
BolC9t53961H Brassica oleracea HOM05D002541 ORTHO05D002717 2.1e-07 58.9 45 62.2
ClCG01G018140 Citrullus lanatus HOM05D002541 ORTHO05D002717 2.1e-07 58.9 40 65.0
Lj4g0015928 Lotus japonicus HOM05D002541 ORTHO05D002717 2.7e-07 58.5 40 62.5
TWI53G0390 Tripterygium wilfordii HOM05D002541 ORTHO05D002717 2.7e-07 58.5 40 67.5
Sp2g28740 Schrenkiella parvula HOM05D002541 ORTHO05D002717 3.5e-07 58.2 45 62.2
TPR.G170 Trifolium pratense HOM05D002541 ORTHO05D002717 3.5e-07 58.2 35 62.9
TAR628G0449 Trochodendron aralioides HOM05D002541 ORTHO05D002717 3.5e-07 58.2 35 77.1
CiPaw.03G147200 Carya illinoinensis HOM05D002541 ORTHO05D002717 4.6e-07 57.8 45 66.7
Manes.13G104600 Manihot esculenta HOM05D002541 ORTHO05D002717 4.6e-07 57.8 42 66.7
Oeu050975.1 Olea europaea HOM05D002541 ORTHO05D002717 4.6e-07 57.8 57 47.4
Solyc02g063410.3 Solanum lycopersicum HOM05D002541 ORTHO05D002717 4.6e-07 57.8 38 65.8
Ah.02g129240 Amaranthus hybridus HOM05D002541 ORTHO05D002717 6.1e-07 57.4 42 61.9
Migut.O00811 Erythranthe guttata HOM05D002541 ORTHO05D002717 6.1e-07 57.4 41 63.4
Rhsim10G0081700 Rhododendron simsii HOM05D002541 ORTHO05D002717 6.1e-07 57.4 41 65.9
SalBow3G4048 Salvia bowleyana HOM05D002541 ORTHO05D002717 6.1e-07 57.4 41 63.4
Solyc02g063420.3 Solanum lycopersicum HOM05D002541 ORTHO05D002717 6.1e-07 57.4 34 70.6
Phvul.003G286300 Phaseolus vulgaris HOM05D002541 ORTHO05D002717 7.9e-07 57.0 43 55.8
Sabra02G0085100 Salix brachista HOM05D002541 ORTHO05D002717 7.9e-07 57.0 40 62.5
Hund14164 Selenicereus undatus HOM05D002541 ORTHO05D002717 7.9e-07 57.0 42 64.3
Sopen02g014510 Solanum pennellii HOM05D002541 ORTHO05D002717 7.9e-07 57.0 34 70.6
arahy.Tifrunner.gnm1.ann1.VV9T4P Arachis hypogaea HOM05D002541 ORTHO05D002717 1.0e-06 56.6 41 61.0
arahy.Tifrunner.gnm1.ann1.WIW9GD Arachis hypogaea HOM05D002541 ORTHO05D002717 1.0e-06 56.6 41 61.0
Lsat_1_v5_gn_4_158041 Lactuca sativa HOM05D002541 ORTHO05D002717 1.0e-06 56.6 36 75.0
CAN.G215.2 Capsicum annuum HOM05D002541 ORTHO05D002717 1.3e-06 56.2 35 68.6
CARHR279620 Cardamine hirsuta HOM05D002541 ORTHO05D002717 1.3e-06 56.2 46 63.0
Glyma.18G153800 Glycine max HOM05D002541 ORTHO05D002717 1.3e-06 56.2 43 55.8
Manes.05G187200 Manihot esculenta HOM05D002541 ORTHO05D002717 1.3e-06 56.2 40 60.0
PGR102G1837 Punica granatum HOM05D002541 ORTHO05D002717 1.3e-06 56.2 39 66.7
THA.LOC104819283 Tarenaya hassleriana HOM05D002541 ORTHO05D002717 1.3e-06 56.2 46 60.9
Glyma.08G273600 Glycine max HOM05D002541 ORTHO05D002717 1.8e-06 55.8 43 55.8
Sopen02g014500 Solanum pennellii HOM05D002541 ORTHO05D002717 1.8e-06 55.8 32 71.9
PGSC0003DMG400010407 Solanum tuberosum HOM05D002541 ORTHO05D002717 1.8e-06 55.8 32 71.9
Glyma.09G203200 Glycine max HOM05D002541 ORTHO05D002717 2.3e-06 55.5 41 61.0
CAN.G252.1 Capsicum annuum HOM05D002541 ORTHO05D002717 3.0e-06 55.1 31 74.2
DCAR_025848 Daucus carota HOM05D002541 ORTHO05D002717 3.0e-06 55.1 40 60.0
Glyma.01G019500 Glycine max HOM05D002541 ORTHO05D002717 3.0e-06 55.1 41 61.0
Psat4g120080 Pisum sativum HOM05D002541 ORTHO05D002717 3.0e-06 55.1 42 59.5
MSTRG.2790 Avicennia marina HOM05D002541 ORTHO05D002717 5.1e-06 54.3 31 64.5
Lsat_1_v5_gn_2_82160 Lactuca sativa HOM05D002541 ORTHO05D002717 5.1e-06 54.3 36 63.9
Peaxi162Scf00943g00214 Petunia axillaris HOM05D002541 ORTHO05D002717 6.7e-06 53.9 50 56.0
PGR102G2976 Punica granatum HOM05D002541 ORTHO05D002717 6.7e-06 53.9 30 73.3
Sed0000176 Sechium edule HOM05D002541 ORTHO05D002717 8.7e-06 53.5 38 60.5
TAR376G1021 Trochodendron aralioides HOM05D002541 ORTHO05D002717 8.7e-06 53.5 36 75.0
TAR381G0067 Trochodendron aralioides HOM05D002541 ORTHO05D002717 8.7e-06 53.5 27 74.1


User provided reference genes

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