Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-275 952.6 453 100.0
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.9e-273 944.1 451 99.1
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.6e-272 939.5 453 98.2
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.2e-268 928.3 463 95.7
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.6e-258 895.6 453 91.4
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.6e-255 885.6 447 93.5
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 6.1e-250 867.1 453 89.0
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 8.8e-249 863.2 453 87.6
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.1e-248 862.8 450 88.4
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 2.6e-248 861.7 453 87.6
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 3.7e-247 857.8 453 89.4
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.4e-246 855.1 451 87.4
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 3.1e-246 854.7 453 87.9
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.1e-246 854.4 448 87.5
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 7.7e-245 850.1 453 86.3
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 7.7e-245 850.1 450 86.9
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 7.7e-245 850.1 453 85.7
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.3e-244 849.4 453 87.0
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.2e-244 848.6 453 86.5
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 6.5e-244 847.0 453 85.0
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 6.5e-244 847.0 447 90.2
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 2.5e-243 845.1 453 85.7
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.5e-243 845.1 448 85.9
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 4.2e-243 844.3 449 86.9
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 5.5e-243 844.0 450 86.2
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 5.5e-243 844.0 453 85.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 9.4e-243 843.2 450 86.9
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.6e-242 842.4 450 86.4
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.7e-242 841.6 449 85.1
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 2.7e-242 841.6 453 85.4
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.6e-242 841.3 449 85.7
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.0e-241 839.7 451 85.6
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 1.8e-241 839.0 452 85.2
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.8e-241 839.0 450 86.9
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 3.9e-241 837.8 452 85.2
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 3.9e-241 837.8 448 85.5
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 6.7e-241 837.0 450 85.6
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 8.8e-241 836.6 453 85.7
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.5e-240 835.9 448 85.9
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-240 835.9 453 85.7
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.5e-240 835.9 444 87.4
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 2.0e-240 835.5 452 84.5
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.0e-240 835.5 450 85.1
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 7.4e-240 833.6 453 84.3
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 7.4e-240 833.6 453 84.3
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.3e-239 832.8 451 86.3
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.3e-239 832.8 451 86.0
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.3e-239 832.8 449 86.4
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.8e-239 831.6 447 87.5
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.7e-239 831.2 451 86.0
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 3.7e-239 831.2 453 85.4
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.8e-238 828.9 453 84.5
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.4e-238 828.6 452 83.8
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.4e-238 828.6 453 84.1
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 2.4e-238 828.6 447 86.4
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 3.1e-238 828.2 448 85.7
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 3.1e-238 828.2 448 85.7
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.3e-238 827.4 453 83.9
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 7.0e-238 827.0 453 85.4
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 7.0e-238 827.0 454 84.6
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 7.0e-238 827.0 446 85.2
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 9.1e-238 826.6 453 83.4
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 9.1e-238 826.6 450 85.6
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.2e-237 826.2 448 85.3
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.6e-237 825.9 452 83.4
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.0e-237 825.5 452 85.0
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.0e-237 825.5 453 84.1
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 2.6e-237 825.1 432 87.7
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.5e-237 824.7 453 84.1
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 5.9e-237 823.9 453 84.1
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 5.9e-237 823.9 450 84.4
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 7.7e-237 823.5 453 83.4
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.2e-236 822.0 453 83.7
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 2.2e-236 822.0 440 85.0
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 3.8e-236 821.2 453 84.5
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 6.5e-236 820.5 450 84.9
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 8.5e-236 820.1 450 83.1
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 8.5e-236 820.1 496 78.8
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 8.5e-236 820.1 449 84.4
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 4.2e-235 817.8 453 83.0
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 5.5e-235 817.4 450 84.7
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 7.2e-235 817.0 453 83.4
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.2e-234 816.2 453 83.2
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.6e-234 815.8 453 83.0
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 2.1e-234 815.5 453 83.0
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 2.1e-234 815.5 453 83.0
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 3.6e-234 814.7 453 83.2
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.7e-234 814.3 447 84.6
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 4.7e-234 814.3 483 79.1
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.0e-233 813.1 448 83.5
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.8e-233 812.4 450 84.2
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 2.3e-233 812.0 453 82.3
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.2e-233 810.8 433 84.8
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 5.7e-232 807.4 453 81.7
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 3.7e-231 804.7 446 84.3
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.1e-230 803.1 450 82.4
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.1e-230 803.1 469 80.2
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 4.5e-229 797.7 447 83.2
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 7.7e-229 797.0 452 82.1
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 3.8e-228 794.7 443 82.4
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 5.5e-227 790.8 447 82.3
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 3.0e-225 785.0 449 80.0
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 2.0e-224 782.3 449 79.1
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 5.7e-224 780.8 448 81.9
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 3.7e-223 778.1 412 86.9
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 9.1e-222 773.5 452 79.9
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 2.7e-221 771.9 450 78.9
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 4.0e-217 758.1 453 78.8
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 9.8e-208 726.9 457 75.9
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 2.9e-207 725.3 448 76.6
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 5.9e-205 717.6 380 87.9
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.3e-204 716.5 446 73.8
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.7e-204 716.1 443 76.7
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 1.9e-203 712.6 452 72.8
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 9.8e-200 700.3 464 73.7
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 8.3e-199 697.2 388 82.0
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 9.5e-195 683.7 376 82.7
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 6.4e-183 644.4 448 69.2
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.5e-181 638.6 452 70.6
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.1e-178 629.4 334 88.6
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.1e-163 580.5 432 66.9
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.6e-160 569.3 451 63.2
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 3.2e-158 562.4 298 88.6
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.3e-155 552.4 299 87.3
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.7e-151 540.0 316 76.3
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 9.0e-145 517.7 288 81.6
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.1e-134 484.2 444 56.8
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 4.1e-129 465.7 379 59.9
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.3e-124 449.9 295 69.5
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.8e-111 406.0 280 68.2
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 2.6e-91 340.1 200 78.5
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 3.3e-78 296.6 162 83.3
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.0e-71 275.0 153 80.4
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.5e-70 270.4 271 51.7
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.3e-70 270.0 153 73.9
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 9.5e-70 268.5 198 70.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 4.0e-68 263.1 140 86.4
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 2.9e-66 256.9 147 78.9
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.8e-66 256.5 148 77.0
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.7e-63 247.7 147 76.9
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.6e-61 240.0 194 60.8
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 7.8e-56 222.2 138 77.5
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.8e-53 213.0 135 77.0
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 9.3e-49 198.7 111 85.6
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.8e-45 186.4 117 71.8
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 9.3e-41 172.2 132 62.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.1e-24 117.9 55 96.4
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.7e-23 112.8 78 69.2
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.0e-22 111.3 74 71.6
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 3.7e-21 107.1 66 72.7
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.1e-20 105.5 66 74.2
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-19 102.1 68 67.6
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.3e-18 98.6 80 57.5
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 5.5e-17 93.2 72 62.5
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 9.4e-17 92.4 80 56.2
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.1e-14 85.5 54 68.5
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.0e-14 84.7 67 53.7
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 1.8e-12 78.2 41 78.0
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.1e-12 77.4 65 56.9
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.2e-11 75.5 46 65.2
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 8.5e-10 69.3 36 83.3
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 1.5e-09 68.6 168 29.8


User provided reference genes

Program Settings