Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.3e-289 997.7 499 100.0
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.2e-288 993.4 499 99.6
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.0e-283 976.9 499 97.0
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 3.4e-278 961.1 507 95.7
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.6e-278 959.9 500 96.4
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.0e-275 950.3 511 94.3
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.5e-254 882.5 520 85.8
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 9.8e-209 730.3 537 72.3
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 6.6e-205 717.6 532 72.2
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 3.6e-203 711.8 528 71.0
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 4.1e-199 698.4 514 72.6
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.7e-197 693.0 491 74.1
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 5.0e-197 691.4 524 69.7
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.5e-196 689.9 512 71.5
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 1.5e-196 689.9 506 70.4
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 2.5e-196 689.1 463 75.6
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.2e-195 686.8 527 70.2
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.6e-193 679.1 494 72.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 4.4e-193 678.3 470 74.3
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 4.4e-193 678.3 508 69.5
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 6.4e-192 674.5 514 69.6
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 8.3e-192 674.1 518 68.3
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 3.2e-191 672.2 504 69.8
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.7e-190 669.1 509 69.0
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 2.7e-190 669.1 456 74.6
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 3.5e-190 668.7 525 67.0
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 4.6e-190 668.3 509 68.8
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 4.6e-190 668.3 507 69.2
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 7.8e-190 667.5 557 65.7
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.3e-189 666.8 518 67.0
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 5.0e-189 664.8 484 71.1
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 5.0e-189 664.8 513 69.4
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 6.6e-189 664.5 422 76.5
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.1e-188 663.7 532 63.7
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.5e-188 663.3 498 70.9
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 3.3e-188 662.1 533 66.2
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 9.5e-188 660.6 510 68.0
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.2e-187 660.2 477 69.4
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.6e-187 659.8 511 67.9
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 3.6e-187 658.7 421 76.2
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 8.0e-187 657.5 421 77.7
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.3e-186 656.0 493 68.4
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.3e-186 656.0 471 71.3
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 6.8e-186 654.4 519 66.7
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 8.9e-186 654.1 520 66.3
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.5e-185 653.3 521 65.8
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 9.8e-185 650.6 512 67.4
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.3e-184 650.2 509 67.8
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.9e-184 649.0 514 66.1
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 3.7e-184 648.7 428 76.4
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.9e-184 648.3 488 69.7
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.4e-183 646.7 511 66.7
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.9e-183 646.4 498 68.9
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.9e-183 646.4 510 66.3
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 3.2e-183 645.6 502 66.7
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 4.1e-183 645.2 510 66.3
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 5.4e-183 644.8 436 74.1
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 7.1e-183 644.4 473 70.6
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 7.1e-183 644.4 473 70.6
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.2e-183 644.0 513 64.5
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 1.2e-182 643.7 480 67.9
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 6.0e-182 641.3 515 66.8
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 6.0e-182 641.3 515 66.8
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.0e-181 640.6 502 66.9
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.0e-181 640.6 502 66.9
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.7e-181 639.8 422 75.6
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.7e-181 639.8 511 66.5
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.7e-181 639.8 511 66.5
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 2.3e-181 639.4 432 74.1
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 3.0e-181 639.0 466 71.5
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 3.0e-181 639.0 511 66.5
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.0e-181 639.0 520 65.4
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 3.0e-181 639.0 514 65.8
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 3.0e-181 639.0 432 72.9
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 3.0e-181 639.0 450 71.6
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 5.1e-181 638.3 462 69.0
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 6.6e-181 637.9 487 67.8
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 6.6e-181 637.9 520 66.2
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.1e-180 637.1 548 63.9
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.9e-180 636.3 451 71.0
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 3.3e-180 635.6 510 66.3
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 7.3e-180 634.4 520 64.8
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.6e-179 633.3 453 70.0
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.1e-179 632.9 472 68.6
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.1e-178 630.6 522 64.2
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.8e-178 629.8 519 64.7
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.3e-178 629.4 424 73.1
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.3e-178 629.4 488 66.4
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 3.1e-178 629.0 476 68.9
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 2.0e-177 626.3 473 69.6
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 2.0e-177 626.3 515 65.4
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 9.9e-177 624.0 495 65.3
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 2.9e-176 622.5 504 64.5
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.1e-175 620.5 507 63.5
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.9e-175 619.8 492 63.6
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 3.2e-175 619.0 481 65.9
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 4.1e-175 618.6 421 72.4
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 5.4e-175 618.2 475 66.3
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 7.1e-175 617.8 481 65.5
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 6.0e-174 614.8 443 72.5
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.3e-173 613.6 487 65.7
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 6.6e-173 611.3 488 67.4
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 7.3e-172 607.8 607 56.3
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.4e-169 598.6 419 69.0
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 7.6e-169 597.8 444 70.0
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 5.4e-167 591.7 416 70.7
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.1e-166 589.7 519 62.6
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 6.2e-163 578.2 515 61.4
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 2.4e-162 576.2 575 57.4
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 9.0e-162 574.3 421 67.0
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 3.2e-159 565.8 422 67.3
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 4.3e-156 555.4 450 62.2
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.6e-156 555.1 489 61.3
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 6.2e-155 551.6 418 65.3
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.1e-154 550.8 531 57.8
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.4e-154 550.4 434 62.2
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 2.4e-154 549.7 524 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.6e-153 546.2 478 58.2
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 4.5e-153 545.4 520 55.2
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 9.9e-153 544.3 372 69.1
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 1.3e-152 543.9 507 59.6
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 4.9e-152 542.0 453 64.7
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 5.1e-149 531.9 454 63.9
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 8.7e-149 531.2 513 56.9
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 5.6e-148 528.5 434 65.0
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.1e-147 526.6 503 55.5
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 4.0e-146 522.3 482 58.1
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 6.9e-146 521.5 505 57.8
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.5e-145 520.4 435 64.8
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.6e-145 519.6 355 72.4
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.2e-143 512.7 383 68.4
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.3e-141 506.5 461 61.2
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.7e-139 499.2 404 67.6
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.5e-137 493.8 518 56.0
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.1e-135 487.6 372 66.9
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 3.5e-134 482.6 356 69.1
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.3e-133 480.7 411 63.5
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 5.1e-133 478.8 435 60.5
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 1.3e-131 474.2 356 67.7
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.6e-131 473.8 492 52.8
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.1e-130 469.5 408 61.3
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.0e-129 466.8 360 66.4
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.5e-127 459.9 441 57.6
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.1e-124 451.1 328 70.1
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.6e-116 423.3 379 62.8
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.8e-114 417.2 367 59.4
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.7e-112 410.6 372 60.5
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 5.9e-105 385.6 281 69.0
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.6e-102 377.5 443 52.1
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.7e-88 330.9 210 76.2
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 4.3e-87 326.2 451 43.0
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 8.6e-72 275.4 288 57.6
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 9.5e-71 271.9 302 52.6
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 4.6e-65 253.1 233 63.9
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.5e-63 248.1 145 80.7
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 3.3e-63 246.9 316 51.9
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 6.8e-61 239.2 193 59.1
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 4.9e-59 233.0 155 73.5
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.0e-52 211.1 394 35.0
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 7.6e-52 209.1 160 60.0
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 2.3e-48 197.6 187 60.4
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.3e-48 197.6 499 32.1
FAN23G1809 Fragaria x ananassa HOM05D030250 ORTHO05D004552 5.3e-45 186.4 107 91.6
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 7.1e-42 176.0 103 76.7
FAN20G2717 Fragaria x ananassa HOM05D030250 ORTHO05D004552 6.2e-30 136.3 112 70.5
FAN23G0554 Fragaria x ananassa HOM05D030250 ORTHO05D004552 1.8e-29 134.8 112 69.6
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 5.5e-18 96.7 51 86.3
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.0e-16 92.4 183 31.1
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.0e-16 92.4 51 78.4
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 5.1e-16 90.1 49 83.7
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 6.3e-14 83.2 230 27.8
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.8e-13 81.6 116 46.6
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.2e-09 68.9 63 49.2
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 2.1e-09 68.2 106 40.6
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.6e-09 67.4 39 79.5
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 2.8e-06 57.8 43 65.1


User provided reference genes

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