Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 5.1e-151 537.7 276 100.0
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.7e-149 532.7 276 98.6
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.7e-149 532.7 276 98.6
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 6.9e-148 527.3 276 98.9
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.6e-128 463.0 283 87.3
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 4.3e-113 411.8 282 79.1
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 3.6e-112 408.7 281 77.2
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 3.7e-109 398.7 296 76.0
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 2.7e-107 392.5 287 71.8
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 5.0e-106 388.3 278 73.7
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 1.9e-105 386.3 263 77.9
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 5.6e-105 384.8 276 74.3
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.6e-104 383.3 221 86.4
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 1.4e-103 380.2 224 86.2
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.8e-103 379.8 271 76.0
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 2.3e-103 379.4 287 73.9
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 2.3e-103 379.4 221 86.4
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 2.3e-103 379.4 291 72.2
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 4.0e-103 378.6 224 85.3
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 8.9e-103 377.5 283 72.1
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.2e-102 377.1 278 71.6
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.0e-102 376.3 233 82.8
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 2.0e-102 376.3 222 85.6
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 5.8e-102 374.8 286 72.0
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 7.5e-102 374.4 214 88.3
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.3e-101 373.6 274 72.6
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 2.9e-101 372.5 233 83.3
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.9e-101 372.5 233 83.3
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.9e-101 372.5 289 69.9
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 4.9e-101 371.7 274 74.1
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 6.4e-101 371.3 287 70.7
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 6.4e-101 371.3 278 71.2
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 6.4e-101 371.3 285 71.9
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 1.1e-100 370.5 257 75.9
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 1.4e-100 370.2 264 76.5
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.4e-100 370.2 283 70.7
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.4e-100 370.2 266 72.6
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 2.4e-100 369.4 279 71.0
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.2e-100 369.0 214 86.9
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 4.1e-100 368.6 277 72.6
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 9.2e-100 367.5 285 71.2
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 9.2e-100 367.5 214 86.9
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.6e-99 366.7 266 75.2
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 6.0e-99 364.8 255 77.3
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.0e-98 364.0 280 69.3
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.7e-98 363.2 286 71.7
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 3.0e-98 362.5 287 72.1
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 8.6e-98 360.9 292 71.6
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.5e-97 360.1 262 76.3
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.5e-97 360.1 229 80.8
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.5e-97 360.1 229 80.8
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 1.9e-97 359.8 276 69.2
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.5e-97 359.4 288 70.8
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.5e-97 359.4 288 70.8
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 2.5e-97 359.4 230 80.0
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 2.5e-97 359.4 197 91.9
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 3.3e-97 359.0 224 82.6
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 5.6e-97 358.2 202 90.1
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 7.3e-97 357.8 284 70.4
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 9.5e-97 357.5 268 72.4
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 9.5e-97 357.5 260 74.2
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 9.5e-97 357.5 282 70.6
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.2e-96 357.1 290 69.7
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.2e-96 357.1 242 76.9
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.2e-96 357.1 228 81.1
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.6e-96 356.7 214 84.6
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.6e-96 356.7 214 83.2
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 2.1e-96 356.3 294 67.7
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 2.1e-96 356.3 214 85.5
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.8e-96 355.9 214 84.6
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 3.6e-96 355.5 273 70.7
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 3.6e-96 355.5 294 68.7
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 4.7e-96 355.1 285 70.9
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 4.7e-96 355.1 286 72.0
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 8.1e-96 354.4 214 85.5
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 8.1e-96 354.4 270 71.9
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 1.1e-95 354.0 225 81.3
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.4e-95 353.6 197 90.9
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.8e-95 353.2 267 73.0
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 3.1e-95 352.4 213 86.4
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 5.2e-95 351.7 264 72.3
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 8.9e-95 350.9 195 90.8
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 5.8e-94 348.2 287 69.7
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 7.5e-94 347.8 208 86.5
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 7.5e-94 347.8 286 68.9
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 7.5e-94 347.8 285 67.0
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.3e-93 347.1 289 68.5
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.7e-93 346.7 280 66.8
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 1.7e-93 346.7 289 68.5
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.9e-93 345.9 274 69.3
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 8.3e-93 344.4 230 80.0
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 1.1e-92 344.0 292 68.2
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 1.1e-92 344.0 212 81.1
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.9e-92 343.2 205 85.9
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 4.1e-92 342.0 286 69.6
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 5.4e-92 341.7 216 81.0
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 9.2e-92 340.9 216 83.3
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 9.2e-92 340.9 299 67.9
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 2.1e-91 339.7 193 87.6
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.0e-90 337.4 287 68.6
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 1.0e-90 337.4 277 66.4
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 1.1e-89 334.0 278 68.7
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 1.9e-89 333.2 220 76.4
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.6e-88 330.1 296 66.2
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 5.2e-87 325.1 214 78.0
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 7.1e-84 314.7 187 86.1
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.2e-83 313.9 217 71.9
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 6.0e-83 311.6 187 82.9
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 1.3e-82 310.5 344 53.5
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 3.0e-82 309.3 222 74.8
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.5e-81 307.0 187 80.7
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 4.3e-81 305.4 206 77.2
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.2e-80 303.9 239 70.3
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.2e-77 293.1 230 70.4
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 2.1e-75 286.6 157 91.7
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.7e-75 286.2 271 63.1
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 6.0e-75 285.0 189 77.8
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 9.0e-71 271.2 246 64.2
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 9.0e-71 271.2 238 67.6
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 7.1e-68 261.5 156 87.2
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 1.1e-65 254.2 134 95.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 7.4e-65 251.5 160 75.6
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 5.3e-63 245.4 192 64.6
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 1.1e-60 237.7 133 90.2
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 2.4e-60 236.5 209 66.0
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 3.2e-60 236.1 246 55.7
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.2e-59 234.2 191 69.1
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 1.6e-59 233.8 160 70.6
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 4.1e-47 192.6 140 72.9
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 2.2e-40 170.2 90 96.7
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 3.1e-39 166.4 89 93.3
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 7.9e-35 151.8 174 51.7
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.4e-34 151.0 163 54.0
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.8e-32 143.3 173 50.3
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 4.8e-32 142.5 160 48.1
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.4e-23 114.4 78 70.5
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 2.4e-23 113.6 86 67.4
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 5.9e-22 109.0 78 66.7
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 5.7e-17 92.4 140 41.4
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 4.2e-12 76.3 135 40.0
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 4.4e-09 66.2 120 39.2


User provided reference genes

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