Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.6e-101 372.9 206 100.0
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.8e-99 364.4 207 98.1
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.4e-97 359.0 206 96.6
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.2e-97 358.6 206 96.6
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.7e-96 355.5 217 93.1
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.1e-92 343.6 217 89.4
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 9.3e-73 277.3 167 88.6
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.5e-46 190.3 215 58.1
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 4.4e-46 188.7 212 62.7
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 4.8e-45 185.3 219 59.8
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 8.2e-45 184.5 213 60.6
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 2.0e-43 179.9 217 59.4
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 2.0e-43 179.9 216 57.9
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 1.7e-42 176.8 219 61.2
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 2.9e-42 176.0 215 53.0
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 8.5e-42 174.5 211 52.1
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.2e-40 170.6 216 56.5
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 2.7e-40 169.5 208 55.8
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 4.7e-40 168.7 208 55.3
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.0e-39 166.0 209 56.0
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 5.7e-38 161.8 216 54.2
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 2.8e-37 159.5 232 52.2
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 4.8e-37 158.7 210 55.2
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-36 157.5 206 54.4
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 4.1e-36 155.6 213 52.1
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 9.1e-36 154.5 218 55.5
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 5.9e-35 151.8 213 52.1
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 5.9e-35 151.8 219 53.4
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 7.7e-35 151.4 211 50.2
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.7e-34 150.2 217 51.2
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.7e-34 150.2 217 51.2
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.7e-34 150.2 207 51.7
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 2.3e-34 149.8 208 50.5
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 2.9e-34 149.4 212 58.0
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.5e-33 146.4 213 48.8
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.5e-33 146.4 213 49.3
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 3.3e-33 146.0 216 49.5
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 4.2e-33 145.6 209 51.7
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.2e-33 145.6 220 52.3
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.2e-33 145.6 216 50.9
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 5.5e-33 145.2 219 53.0
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 5.5e-33 145.2 209 49.8
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.5e-33 145.2 214 53.7
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 5.5e-33 145.2 221 49.8
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 9.5e-33 144.4 212 51.9
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.2e-32 144.1 213 49.3
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.8e-32 142.9 212 47.6
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 8.0e-32 141.4 217 49.8
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.0e-31 141.0 209 50.7
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.3e-31 139.8 210 53.3
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 6.8e-31 138.3 215 47.9
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.0e-30 136.7 218 53.2
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.0e-30 136.7 208 51.0
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.6e-30 136.3 209 48.3
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 4.4e-30 135.6 211 46.4
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 4.4e-30 135.6 220 45.9
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.8e-30 134.4 186 50.5
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.8e-30 134.4 213 47.9
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.7e-29 133.7 215 48.8
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.7e-29 133.7 224 45.1
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.8e-29 132.9 214 52.3
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.7e-29 132.5 213 53.5
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 6.3e-29 131.7 161 53.4
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 8.3e-29 131.3 221 48.9
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.1e-28 131.0 218 50.0
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.1e-28 131.0 211 51.2
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.8e-28 130.2 212 50.5
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 2.4e-28 129.8 224 47.3
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 2.4e-28 129.8 211 47.9
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 4.1e-28 129.0 237 43.9
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 5.4e-28 128.6 211 50.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.6e-27 127.1 214 50.5
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.6e-27 127.1 213 48.8
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 1.6e-27 127.1 217 51.6
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.0e-27 126.7 212 50.0
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.0e-27 126.7 205 47.3
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.7e-27 126.3 214 50.5
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 4.5e-27 125.6 207 44.4
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 4.5e-27 125.6 217 48.8
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 5.9e-27 125.2 213 44.6
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 5.9e-27 125.2 214 49.1
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.0e-26 124.4 209 45.0
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 1.3e-26 124.0 185 47.0
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.7e-26 123.6 207 46.4
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 2.3e-26 123.2 208 43.3
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 2.9e-26 122.9 214 50.0
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 6.6e-26 121.7 206 48.1
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 3.3e-25 119.4 223 48.9
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 5.6e-25 118.6 215 44.2
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 5.6e-25 118.6 221 48.0
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 5.6e-25 118.6 213 51.2
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 7.3e-25 118.2 215 44.2
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 7.3e-25 118.2 215 44.2
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.6e-24 117.1 211 45.0
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.6e-24 117.1 207 45.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.1e-24 116.7 210 42.4
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.1e-24 116.7 210 42.4
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-24 116.3 211 43.1
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-24 116.3 211 45.0
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-24 116.3 212 42.0
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 2.8e-24 116.3 212 42.0
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 4.7e-24 115.5 210 41.9
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-23 113.2 211 44.1
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.3e-23 113.2 212 45.8
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 3.0e-23 112.8 211 43.6
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.2e-22 110.9 212 43.4
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 2.6e-22 109.8 223 50.7
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.3e-21 107.5 217 48.4
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 1.7e-21 107.1 209 46.9
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.4e-20 104.0 216 38.9
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-20 103.2 182 45.1
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 9.2e-20 101.3 181 42.5
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.2e-19 100.9 202 40.1
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.6e-19 100.5 214 47.7
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 2.0e-19 100.1 178 44.4
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.5e-19 99.4 217 44.7
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.7e-18 97.1 214 46.3
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 3.0e-18 96.3 209 43.1
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 3.0e-18 96.3 216 41.7
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 3.9e-18 95.9 170 49.4
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 3.9e-18 95.9 206 40.3
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 5.0e-18 95.5 212 43.9
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 6.6e-18 95.1 169 42.0
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-17 93.6 170 48.8
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.9e-17 93.6 181 43.1
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 5.6e-17 92.0 215 44.2
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.6e-17 92.0 134 49.3
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 7.3e-17 91.7 212 42.5
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 9.5e-17 91.3 182 50.0
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.2e-16 90.9 188 41.5
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.2e-16 90.9 217 42.4
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 1.2e-16 90.9 170 48.2
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.6e-16 90.5 209 34.9
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 2.1e-16 90.1 210 40.5
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.7e-16 89.0 203 41.9
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 4.7e-16 89.0 137 48.9
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 6.2e-16 88.6 209 39.2
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 8.0e-16 88.2 213 37.1
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.1e-15 87.8 208 38.9
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.1e-15 87.8 209 41.1
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-15 87.4 215 36.7
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.8e-15 87.0 217 40.6
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.3e-15 86.7 182 44.5
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 2.3e-15 86.7 119 48.7
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 6.8e-15 85.1 172 44.2
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 6.8e-15 85.1 172 44.2
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.0e-14 83.6 186 39.8
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 2.2e-13 80.1 218 39.0
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.7e-13 79.3 212 35.8
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 6.4e-13 78.6 143 46.2
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 8.3e-13 78.2 211 36.5
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 8.3e-13 78.2 177 40.1
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-12 77.4 112 47.3
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 3.2e-12 76.3 135 44.4
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 7.0e-12 75.1 211 36.5
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.6e-11 73.9 144 45.1
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 4.6e-11 72.4 151 38.4
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 6.0e-11 72.0 210 39.0
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.0e-10 71.2 202 37.6
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 3.0e-10 69.7 185 35.1
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.9e-09 67.0 83 59.0
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.5e-09 66.6 121 45.5
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 3.3e-09 66.2 99 49.5
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 3.3e-09 66.2 179 34.1
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 4.3e-09 65.9 62 64.5
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 7.3e-09 65.1 223 31.8
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 9.5e-09 64.7 211 35.5
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.2e-08 64.3 99 49.5
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 2.8e-08 63.2 102 46.1
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 2.8e-08 63.2 183 35.0
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 4.7e-08 62.4 127 46.5
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 4.7e-08 62.4 98 42.9
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 2.3e-07 60.1 81 45.7
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 3.1e-07 59.7 184 34.2
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 8.9e-07 58.2 173 35.3
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 3.4e-06 56.2 30 83.3
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 4.4e-06 55.8 135 40.7
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 9.9e-06 54.7 179 32.4


User provided reference genes

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