Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 8.8e-42 173.3 95 100.0
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.8e-40 168.3 95 96.8
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 1.8e-39 165.6 92 97.8
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.5e-37 157.1 92 93.5
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.2e-36 154.8 92 92.4
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 1.4e-34 149.4 92 87.0
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 6.1e-27 124.0 92 73.9
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 2.0e-25 119.0 92 70.7
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 4.8e-16 87.8 92 62.0
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 1.8e-15 85.9 94 58.5
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.8e-15 85.9 92 59.8
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 4.1e-15 84.7 92 57.6
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.1e-15 84.7 93 60.2
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 5.4e-15 84.3 93 57.0
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.0e-14 82.4 92 56.5
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.0e-14 82.4 92 56.5
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 2.0e-14 82.4 91 54.9
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.5e-14 81.6 92 58.7
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 4.5e-14 81.3 94 53.2
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 7.7e-14 80.5 92 58.7
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 7.7e-14 80.5 91 57.1
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.0e-13 80.1 92 58.7
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.0e-13 80.1 93 55.9
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 1.7e-13 79.3 92 58.7
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 2.9e-13 78.6 94 61.7
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 3.8e-13 78.2 92 56.5
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 3.8e-13 78.2 90 54.4
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 6.5e-13 77.4 93 54.8
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 8.6e-13 77.0 92 57.6
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 1.9e-12 75.9 97 59.8
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 1.9e-12 75.9 92 55.4
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 3.2e-12 75.1 96 55.2
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 3.2e-12 75.1 91 48.4
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 3.2e-12 75.1 91 50.5
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 4.2e-12 74.7 97 51.5
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 4.2e-12 74.7 90 51.1
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 4.2e-12 74.7 91 57.1
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 4.2e-12 74.7 92 58.7
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 4.2e-12 74.7 91 49.5
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 4.2e-12 74.7 92 53.3
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 4.2e-12 74.7 90 50.0
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 4.2e-12 74.7 92 52.2
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.2e-12 74.7 92 53.3
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 7.2e-12 73.9 91 51.6
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 1.2e-11 73.2 91 48.4
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.2e-11 73.2 90 50.0
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.6e-11 72.8 92 52.2
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.6e-11 72.8 93 55.9
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 2.1e-11 72.4 91 52.7
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 2.1e-11 72.4 94 48.9
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 2.1e-11 72.4 90 50.0
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 2.8e-11 72.0 92 48.9
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.6e-11 71.6 92 46.7
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 3.6e-11 71.6 92 48.9
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 3.6e-11 71.6 93 52.7
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 4.7e-11 71.2 83 57.8
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 4.7e-11 71.2 91 54.9
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 6.1e-11 70.9 95 55.8
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 6.1e-11 70.9 93 53.8
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.0e-11 70.5 84 57.1
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 8.0e-11 70.5 93 53.8
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 8.0e-11 70.5 91 52.7
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 8.0e-11 70.5 90 51.1
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 8.0e-11 70.5 91 50.5
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 1.0e-10 70.1 91 48.4
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.0e-10 70.1 92 53.3
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 1.0e-10 70.1 92 51.1
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 1.0e-10 70.1 77 53.2
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 1.4e-10 69.7 92 47.8
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.4e-10 69.7 93 52.7
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.8e-10 69.3 90 52.2
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.8e-10 69.3 90 52.2
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 1.8e-10 69.3 90 56.7
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 1.8e-10 69.3 90 52.2
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 2.3e-10 68.9 92 47.8
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.3e-10 68.9 91 51.6
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.0e-10 68.6 92 47.8
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 3.0e-10 68.6 94 54.3
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 4.0e-10 68.2 95 49.5
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 4.0e-10 68.2 93 49.5
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 4.0e-10 68.2 98 46.9
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 5.2e-10 67.8 92 46.7
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 5.2e-10 67.8 91 53.8
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 5.2e-10 67.8 91 49.5
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 6.8e-10 67.4 93 52.7
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 6.8e-10 67.4 91 51.6
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 6.8e-10 67.4 91 46.2
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 1.2e-09 66.6 91 50.5
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.2e-09 66.6 95 48.4
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.2e-09 66.6 95 48.4
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.5e-09 66.2 91 51.6
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.5e-09 66.2 91 51.6
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 2.0e-09 65.9 92 48.9
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.6e-09 65.5 91 48.4
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.6e-09 65.5 91 45.1
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 2.6e-09 65.5 95 51.6
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 2.6e-09 65.5 87 51.7
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 3.4e-09 65.1 99 48.5
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 3.4e-09 65.1 90 46.7
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 3.4e-09 65.1 93 45.2
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 4.4e-09 64.7 95 51.6
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 4.4e-09 64.7 91 45.1
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 4.4e-09 64.7 93 45.2
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 4.4e-09 64.7 86 50.0
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 4.4e-09 64.7 87 50.6
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 5.7e-09 64.3 92 46.7
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 5.7e-09 64.3 91 44.0
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 7.5e-09 63.9 91 48.4
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.5e-09 63.9 91 49.5
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 7.5e-09 63.9 101 50.5
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 7.5e-09 63.9 92 52.2
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 7.5e-09 63.9 91 49.5
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 9.8e-09 63.5 92 50.0
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 9.8e-09 63.5 95 51.6
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 1.7e-08 62.8 92 46.7
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 1.7e-08 62.8 92 48.9
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 1.7e-08 62.8 91 47.3
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.7e-08 62.8 91 48.4
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 1.7e-08 62.8 85 48.2
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.8e-08 62.0 91 49.5
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 2.8e-08 62.0 99 49.5
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.8e-08 62.0 91 49.5
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 6.3e-08 60.8 97 43.3
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 6.3e-08 60.8 94 46.8
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 6.3e-08 60.8 95 46.3
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 6.3e-08 60.8 90 50.0
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 6.3e-08 60.8 87 49.4
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 8.3e-08 60.5 91 45.1
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 8.3e-08 60.5 85 48.2
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 8.3e-08 60.5 91 47.3
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 8.3e-08 60.5 43 62.8
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 1.1e-07 60.1 95 53.7
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 1.1e-07 60.1 95 48.4
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 1.1e-07 60.1 92 44.6
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.4e-07 59.7 98 42.9
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 1.8e-07 59.3 96 51.0
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.8e-07 59.3 92 44.6
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.8e-07 59.3 91 42.9
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 1.8e-07 59.3 93 52.7
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 2.4e-07 58.9 92 43.5
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 2.4e-07 58.9 81 51.9
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 2.4e-07 58.9 96 42.7
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 5.4e-07 57.8 92 42.4
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 5.4e-07 57.8 97 42.3
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 5.4e-07 57.8 91 47.3
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 7.0e-07 57.4 91 45.1
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 7.0e-07 57.4 91 45.1
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 9.2e-07 57.0 95 43.2
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 9.2e-07 57.0 42 59.5
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 1.2e-06 56.6 42 59.5
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 1.2e-06 56.6 95 46.3
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 1.6e-06 56.2 91 42.9
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 3.5e-06 55.1 91 45.1
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 4.5e-06 54.7 93 43.0
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 4.5e-06 54.7 95 42.1
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 4.5e-06 54.7 95 42.1
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 4.5e-06 54.7 95 42.1
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 4.5e-06 54.7 95 42.1
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 4.5e-06 54.7 90 48.9
SalBow6G1437 Salvia bowleyana HOM05D003477 ORTHO05D004043 4.5e-06 54.7 67 56.7
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 5.9e-06 54.3 92 41.3
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 5.9e-06 54.3 90 41.1
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 5.9e-06 54.3 90 41.1
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 5.9e-06 54.3 99 47.5
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 5.9e-06 54.3 99 42.4


User provided reference genes

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