Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 0.0e+00 1138.6 576 100.0
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 0.0e+00 1124.8 576 98.6
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 0.0e+00 1118.2 576 97.9
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 0.0e+00 1114.0 576 97.6
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 4.0e-307 1057.4 576 92.4
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.5e-266 922.5 577 80.9
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 4.5e-258 894.4 576 77.6
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 2.4e-251 872.1 569 76.8
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 9.8e-237 823.5 576 71.4
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 4.9e-236 821.2 576 70.5
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 4.1e-235 818.1 576 70.1
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 9.2e-235 817.0 576 70.1
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 1.6e-234 816.2 576 70.7
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 7.8e-234 813.9 577 69.2
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.9e-233 812.0 576 70.8
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 6.6e-233 810.8 576 69.8
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 1.1e-232 810.1 576 70.3
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 1.8e-230 802.7 575 71.3
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 4.0e-230 801.6 575 68.7
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 4.4e-229 798.1 576 69.1
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.7e-228 796.2 578 70.2
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 4.3e-224 781.6 576 67.9
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 4.3e-224 781.6 498 83.9
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 2.1e-223 779.2 576 67.0
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.4e-222 776.5 576 66.1
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 3.1e-222 775.4 587 67.8
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 6.8e-222 774.2 577 65.9
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 5.4e-219 764.6 576 65.5
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 8.6e-217 757.3 576 66.5
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.6e-215 751.9 576 66.3
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 4.0e-214 748.4 576 64.6
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 4.4e-213 745.0 576 65.6
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 2.9e-212 742.3 576 66.1
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 3.7e-212 741.9 579 64.6
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 6.4e-212 741.1 577 64.3
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 1.4e-211 740.0 595 64.5
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 5.4e-211 738.0 576 64.4
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 5.4e-211 738.0 577 63.1
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.2e-210 736.9 576 63.9
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 1.2e-210 736.9 576 64.6
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 2.7e-210 735.7 576 64.1
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 3.5e-210 735.3 577 63.1
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 7.8e-210 734.2 576 63.2
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 1.3e-209 733.4 577 63.8
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 3.0e-209 732.3 577 64.5
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 3.0e-209 732.3 576 65.8
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 5.1e-209 731.5 576 64.4
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 1.1e-208 730.3 576 64.6
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 5.6e-208 728.0 576 64.1
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 5.6e-208 728.0 576 65.3
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 2.1e-207 726.1 576 62.7
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 4.0e-206 721.8 605 60.8
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 4.0e-206 721.8 576 62.7
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 6.8e-206 721.1 606 62.2
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.2e-205 720.3 576 62.5
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 1.2e-205 720.3 579 61.0
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 4.4e-205 718.4 577 63.4
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 1.3e-204 716.8 578 62.1
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 6.4e-204 714.5 578 62.1
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 1.4e-203 713.4 576 62.8
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 2.4e-203 712.6 576 62.8
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 7.8e-202 707.6 576 62.8
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.0e-201 707.2 576 62.2
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 1.3e-201 706.8 576 62.7
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.2e-199 700.3 579 62.5
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 8.1e-199 697.6 579 62.5
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 7.6e-197 691.0 579 62.2
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 2.4e-195 686.0 577 59.8
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 3.2e-195 685.6 576 61.5
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 3.2e-195 685.6 578 61.2
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 3.5e-194 682.2 579 61.8
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 1.9e-192 676.4 577 59.8
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 9.6e-192 674.1 606 59.4
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.8e-188 662.1 518 64.7
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 4.9e-188 661.8 498 67.1
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 4.2e-187 658.7 579 60.1
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.4e-187 658.3 368 92.4
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 1.1e-184 650.6 576 57.6
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 5.6e-184 648.3 578 59.0
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 5.6e-184 648.3 578 59.0
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.6e-183 646.7 578 58.3
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 2.0e-181 639.8 578 59.0
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 5.8e-181 638.3 646 52.6
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.9e-180 636.0 553 58.6
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 2.9e-180 636.0 519 61.1
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 4.9e-180 635.2 503 64.6
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 8.4e-180 634.4 518 62.2
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 1.1e-179 634.0 578 58.3
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 1.1e-179 634.0 578 58.3
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 7.4e-176 621.3 553 58.2
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 3.4e-173 612.5 576 55.4
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 7.9e-170 601.3 474 71.5
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 4.3e-168 595.5 476 64.3
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 6.3e-167 591.7 552 58.5
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.1e-166 590.9 681 47.7
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.6e-165 586.3 429 68.3
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.8e-164 582.4 444 65.1
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 7.9e-154 548.1 395 68.9
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 8.8e-153 544.7 394 67.5
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 1.1e-150 537.7 430 62.8
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.4e-150 536.6 556 50.9
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.2e-141 507.7 472 57.6
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 3.2e-139 499.6 583 49.2
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 8.3e-127 458.4 463 53.6
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 5.9e-125 452.2 609 42.4
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 7.2e-123 445.3 357 61.9
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 7.0e-110 402.1 600 40.0
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 3.6e-106 389.8 579 40.9
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 7.5e-104 382.1 306 61.8
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 3.6e-74 283.5 245 57.6
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.9e-62 244.6 386 41.2
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 1.6e-58 231.5 208 58.2
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.2e-56 225.3 530 31.7
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 3.4e-56 223.8 159 71.1
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 7.6e-56 222.6 297 44.4
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 3.7e-34 150.6 152 51.3
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 1.8e-33 148.3 135 56.3
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 8.5e-31 139.4 99 66.7
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 1.2e-29 135.6 489 24.3
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 3.0e-28 131.0 225 37.8
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 2.2e-26 124.8 617 23.2
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 4.8e-26 123.6 134 49.3
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 4.1e-25 120.6 74 70.3
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 4.1e-25 120.6 131 45.8
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 5.0e-23 113.6 115 49.6
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 5.0e-23 113.6 115 49.6
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.6e-21 108.6 73 71.2
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.6e-19 101.3 366 24.9
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 3.4e-19 100.9 90 56.7
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.1e-17 95.9 79 57.0
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.4e-17 95.5 45 97.8
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.0e-16 91.7 79 55.7
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 7.2e-14 83.2 263 27.8
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-13 81.3 56 67.9
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 2.6e-11 74.7 52 67.3
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.2e-10 71.6 51 60.8
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 8.6e-07 59.7 60 50.0
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 7.3e-06 56.6 70 44.3


User provided reference genes

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