Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.5e-236 822.4 409 100.0
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.5e-236 822.4 409 100.0
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 2.9e-227 791.6 409 95.6
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.1e-226 789.6 409 95.4
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 9.4e-226 786.6 409 95.4
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.8e-224 782.3 409 94.6
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.5e-212 741.5 415 88.9
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 7.8e-172 607.4 413 75.5
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-157 560.1 414 70.8
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 4.0e-144 515.4 403 65.8
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 4.9e-142 508.4 396 65.4
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 3.2e-141 505.8 399 64.7
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.7e-140 502.7 400 64.8
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 2.5e-138 496.1 402 63.9
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 7.4e-138 494.6 412 62.1
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.2e-135 487.3 400 61.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 4.5e-135 485.3 398 61.8
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.9e-134 482.6 401 63.1
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 3.8e-134 482.3 404 61.4
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.1e-133 480.7 399 62.4
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.1e-133 480.7 404 59.2
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.9e-133 479.9 401 62.6
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 2.5e-133 479.6 402 61.4
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 4.2e-133 478.8 404 61.6
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.8e-131 473.4 400 62.0
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 6.7e-131 471.5 400 61.8
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.1e-130 470.7 405 60.7
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 1.5e-130 470.3 400 60.0
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 4.3e-130 468.8 412 58.7
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 7.4e-130 468.0 399 60.9
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 9.7e-130 467.6 403 58.8
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 9.7e-130 467.6 411 59.6
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 2.2e-129 466.5 399 59.9
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.7e-129 465.7 403 57.1
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 6.3e-129 464.9 403 60.5
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.1e-128 464.2 409 59.2
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.4e-128 463.8 416 58.2
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 1.8e-128 463.4 402 60.2
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 5.3e-128 461.8 454 55.5
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 9.1e-128 461.1 396 60.4
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 5.9e-127 458.4 398 59.5
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.3e-126 457.2 400 59.2
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.4e-125 453.8 411 59.1
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.9e-125 453.4 405 58.0
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.5e-125 453.0 411 58.4
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 5.5e-125 451.8 413 56.4
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.6e-124 449.1 399 58.4
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 7.9e-124 448.0 399 57.9
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 7.9e-124 448.0 395 57.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.4e-123 447.2 401 56.9
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.8e-123 446.8 398 56.3
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 3.0e-123 446.0 400 57.0
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 3.9e-123 445.7 406 58.6
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 5.1e-123 445.3 396 60.1
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.5e-122 443.7 460 53.7
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.6e-122 443.0 402 57.2
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 5.7e-122 441.8 400 56.5
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 5.7e-122 441.8 414 58.9
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 5.7e-122 441.8 412 59.2
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 7.4e-122 441.4 412 58.7
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.8e-121 439.5 398 58.0
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 2.8e-121 439.5 423 57.0
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 4.8e-121 438.7 398 55.8
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.1e-120 437.6 399 59.4
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.4e-120 437.2 405 58.3
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.8e-120 436.8 385 59.0
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 2.4e-120 436.4 407 56.5
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 5.3e-120 435.3 407 55.5
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 5.9e-119 431.8 401 58.1
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 1.0e-118 431.0 397 56.7
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.0e-118 431.0 395 54.7
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.7e-118 430.3 408 55.9
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 3.8e-118 429.1 401 55.9
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.5e-117 427.2 400 55.0
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 3.2e-117 426.0 397 56.7
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 4.2e-117 425.6 401 56.4
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.4e-117 424.5 398 55.5
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.2e-116 424.1 400 54.8
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.6e-116 423.7 411 57.2
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.6e-116 423.7 401 55.4
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 8.0e-116 421.4 434 52.1
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.6e-114 416.4 408 54.4
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.3e-113 414.1 406 53.9
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.7e-113 413.7 399 56.1
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.4e-112 410.6 414 54.6
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 2.6e-111 406.4 403 53.6
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 5.9e-111 405.2 410 53.9
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.0e-110 404.4 407 54.5
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.3e-110 404.1 414 54.6
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.9e-109 400.2 376 57.4
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.2e-108 397.5 427 50.4
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 3.6e-108 396.0 394 54.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.4e-107 394.0 412 53.4
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 6.8e-107 391.7 411 53.5
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 2.0e-106 390.2 420 50.5
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 2.6e-106 389.8 411 53.8
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 6.3e-105 385.2 414 53.1
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.4e-104 384.0 405 52.1
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 5.3e-104 382.1 418 47.6
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.6e-103 380.6 416 52.4
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 3.4e-98 362.8 397 48.4
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.5e-95 352.8 320 58.1
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 6.6e-94 348.6 311 55.6
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 8.6e-94 348.2 475 44.0
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.5e-93 347.4 298 58.7
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 4.0e-91 339.3 351 51.9
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.4e-88 330.1 271 60.1
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 3.2e-88 329.7 406 47.3
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 5.4e-88 328.9 463 41.3
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.0e-82 310.5 383 48.6
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 3.7e-81 306.2 409 46.0
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.7e-78 297.4 417 44.6
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 5.0e-78 295.8 401 41.6
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 5.6e-77 292.4 450 39.1
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 9.5e-77 291.6 248 60.9
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.2e-72 276.6 404 41.1
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.2e-71 274.6 379 43.8
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.2e-71 274.6 441 39.2
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 4.7e-68 262.7 465 36.8
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 4.7e-68 262.7 176 67.6
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.9e-64 250.8 409 38.1
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 6.2e-60 235.7 222 57.2
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.2e-56 223.4 375 36.5
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 9.3e-56 221.9 177 62.7
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 5.1e-54 216.1 317 42.9
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 1.6e-52 211.1 155 64.5
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.2e-50 204.9 181 56.9
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.8e-43 181.0 175 49.1
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 4.5e-42 176.4 110 73.6
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 3.0e-38 163.7 186 55.4
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 6.7e-38 162.5 197 48.2
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 4.2e-32 143.3 178 50.6
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.3e-30 138.3 160 48.8
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 3.9e-30 136.7 268 34.3
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 3.4e-26 123.6 99 57.6
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.6e-18 97.4 130 43.1
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 6.5e-17 92.8 97 50.5
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 9.4e-16 89.0 63 69.8
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 9.4e-16 89.0 63 69.8
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.4e-14 85.1 114 43.0
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 5.1e-14 83.2 52 76.9
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 2.0e-13 81.3 120 40.0
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.1e-11 75.5 159 34.6
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 9.1e-11 72.4 403 21.8
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 7.2e-08 62.8 84 39.3
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 7.2e-08 62.8 84 39.3


User provided reference genes

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