Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.1e-215 753.1 406 100.0
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.0e-211 737.6 404 98.8
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.2e-209 733.0 404 97.8
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.2e-209 733.0 404 97.3
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 6.7e-208 727.2 404 94.3
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.3e-206 723.0 402 94.5
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 1.5e-191 672.9 392 92.6
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 3.7e-174 615.1 401 83.0
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 9.2e-173 610.5 363 88.7
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 1.0e-171 607.1 376 86.4
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 4.9e-166 588.2 358 86.3
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 5.4e-165 584.7 356 84.8
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.2e-164 583.6 373 82.8
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.3e-163 580.1 347 87.0
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 4.3e-162 575.1 362 82.9
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 5.6e-162 574.7 347 86.2
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 5.6e-162 574.7 347 86.2
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 9.5e-162 573.9 359 78.3
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 1.6e-161 573.2 367 83.1
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 2.1e-161 572.8 361 83.4
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 2.8e-161 572.4 356 84.6
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 2.8e-161 572.4 375 80.3
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.8e-160 569.7 364 83.0
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.8e-160 569.7 356 84.3
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 3.1e-160 568.9 359 82.7
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 4.0e-160 568.5 367 81.2
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.6e-159 565.8 360 83.1
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 4.4e-159 565.1 374 80.2
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 4.4e-159 565.1 356 83.1
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 5.8e-159 564.7 352 79.8
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.8e-159 564.7 369 79.7
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 7.5e-159 564.3 359 77.2
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 1.3e-158 563.5 363 82.1
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.3e-158 563.5 369 79.7
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 1.7e-158 563.1 363 76.6
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 1.7e-158 563.1 354 83.1
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 2.9e-158 562.4 373 80.7
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.9e-158 562.4 374 75.9
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 2.9e-158 562.4 362 82.0
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 3.7e-158 562.0 368 80.2
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.7e-158 562.0 359 81.1
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 4.9e-158 561.6 364 77.5
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 6.4e-158 561.2 344 79.9
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 6.4e-158 561.2 364 77.5
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 1.1e-157 560.5 358 82.7
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 1.1e-157 560.5 347 85.0
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 1.4e-157 560.1 376 77.7
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.4e-157 560.1 369 76.2
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 1.9e-157 559.7 362 81.5
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 1.9e-157 559.7 362 81.5
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 1.9e-157 559.7 368 81.5
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 2.4e-157 559.3 357 81.5
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 3.2e-157 558.9 360 81.1
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 4.1e-157 558.5 362 81.8
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 4.1e-157 558.5 335 86.6
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 4.1e-157 558.5 375 74.7
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 5.4e-157 558.1 361 82.0
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 9.2e-157 557.4 367 79.0
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 1.6e-156 556.6 397 76.3
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 2.1e-156 556.2 362 81.8
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 2.1e-156 556.2 355 80.8
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.7e-156 555.8 376 73.9
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 3.5e-156 555.4 374 79.9
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.3e-155 553.5 373 75.9
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.7e-155 553.1 362 75.1
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 2.3e-155 552.7 395 74.9
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.1e-154 550.4 369 75.3
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 1.5e-154 550.1 361 80.9
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 1.9e-154 549.7 355 80.0
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 2.5e-154 549.3 359 79.4
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 3.3e-154 548.9 362 80.4
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 3.3e-154 548.9 337 82.5
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 3.3e-154 548.9 377 75.6
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 5.6e-154 548.1 361 76.2
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.6e-153 546.6 361 77.8
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.1e-153 546.2 360 80.3
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 2.8e-153 545.8 362 74.3
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 2.8e-153 545.8 369 77.5
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 3.6e-153 545.4 368 77.7
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 4.7e-153 545.0 361 74.5
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 6.2e-153 544.7 354 77.7
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 6.2e-153 544.7 338 80.5
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 6.2e-153 544.7 368 79.3
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 6.2e-153 544.7 361 74.2
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 8.1e-153 544.3 362 79.8
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 8.1e-153 544.3 362 79.8
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 8.1e-153 544.3 361 74.0
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.1e-152 543.9 361 73.7
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 4.0e-152 542.0 351 77.8
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 5.8e-151 538.1 384 76.0
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.9e-150 535.8 381 75.9
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.9e-150 535.8 343 80.5
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 3.8e-150 535.4 343 80.5
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 4.9e-150 535.0 355 76.6
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 4.9e-150 535.0 386 69.7
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 1.1e-149 533.9 374 75.1
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.1e-149 533.9 313 82.4
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.1e-149 531.9 343 80.2
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 7.1e-149 531.2 309 82.2
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 1.6e-148 530.0 327 83.5
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 2.7e-148 529.3 369 77.2
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 8.7e-147 524.2 354 72.6
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 8.7e-147 524.2 356 73.6
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.5e-146 523.5 366 77.6
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 2.5e-146 522.7 368 73.6
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 4.3e-146 521.9 359 76.6
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 7.3e-146 521.2 335 76.4
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 9.6e-146 520.8 341 78.6
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 6.2e-145 518.1 315 79.0
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 6.2e-145 518.1 353 73.4
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 8.1e-145 517.7 353 73.7
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 1.4e-144 516.9 445 64.9
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 5.2e-144 515.0 333 75.4
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 5.2e-144 515.0 333 76.0
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 9.0e-144 514.2 299 81.9
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 3.4e-143 512.3 365 69.6
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.7e-142 510.0 366 70.5
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 1.7e-142 510.0 359 72.1
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 3.2e-141 505.8 313 78.9
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 3.9e-139 498.8 334 73.1
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 2.8e-137 492.7 373 67.6
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 8.1e-137 491.1 364 70.1
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.4e-136 490.3 364 73.4
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 9.0e-136 487.6 286 81.8
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 4.5e-135 485.3 313 83.7
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 7.6e-135 484.6 289 86.9
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 6.4e-134 481.5 303 82.8
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 1.4e-133 480.3 400 64.8
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 1.9e-133 479.9 359 72.4
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 9.3e-133 477.6 344 73.0
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 8.7e-131 471.1 349 72.2
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 1.5e-130 470.3 359 71.9
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 3.3e-130 469.2 360 69.7
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 6.9e-128 461.5 310 75.5
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 9.9e-127 457.6 264 83.0
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 1.6e-124 450.3 298 70.8
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 1.3e-123 447.2 350 62.0
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.9e-117 426.8 304 66.1
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.5e-117 426.4 341 67.4
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 2.1e-116 423.3 333 60.7
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 6.0e-116 421.8 266 78.2
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 2.3e-115 419.9 345 60.3
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 3.9e-115 419.1 371 59.8
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 2.5e-114 416.4 300 66.0
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 2.0e-111 406.8 306 63.7
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 4.6e-108 395.6 364 63.2
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 4.6e-108 395.6 221 86.9
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 2.5e-106 389.8 433 51.7
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.4e-101 374.0 234 79.1
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 6.7e-91 338.6 299 56.5
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.5e-85 320.9 211 70.1
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 4.4e-82 309.3 205 78.5
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 1.5e-74 284.3 150 92.7
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 3.7e-65 253.1 375 45.3
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 6.4e-57 225.7 170 71.8
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 6.4e-57 225.7 178 60.7
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 6.8e-43 179.1 164 57.9
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 3.8e-33 146.7 89 80.9
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.8e-27 127.9 294 30.3
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 2.4e-27 127.5 103 62.1
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 4.9e-25 119.8 332 28.9
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 1.1e-21 108.6 283 28.6
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 1.3e-20 105.1 65 73.8
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 6.2e-20 102.8 95 78.9
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 8.1e-20 102.4 247 34.4
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 6.9e-19 99.4 76 85.5
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 2.0e-18 97.8 61 78.7
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 2.0e-18 97.8 61 78.7
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 4.5e-18 96.7 61 78.7
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.7e-17 94.7 380 25.3
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 9.3e-16 89.0 59 72.9
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 4.6e-15 86.7 61 75.4
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 2.6e-10 70.9 108 35.2
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 1.0e-09 68.9 33 97.0
Cpa.g.c48203 Carica papaya HOM05D003970 ORTHO05D004615 1.4e-08 65.1 58 84.5
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 1.6e-07 61.6 41 73.2
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 2.7e-07 60.8 41 70.7
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 3.5e-07 60.5 39 74.4
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 8.7e-06 55.8 49 57.1


User provided reference genes

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