Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.5e-42 173.7 92 100.0
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.7e-29 132.5 70 97.1
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.0e-24 113.6 60 96.7
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 8.0e-24 113.6 60 96.7
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-23 113.2 74 79.7
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.3e-23 112.1 78 76.9
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.3e-23 112.1 78 76.9
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 3.7e-21 104.8 56 96.4
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 3.7e-21 104.8 56 96.4
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.1e-20 101.7 52 98.1
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.1e-20 101.7 52 98.1
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 7.0e-20 100.5 52 96.2
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.0e-20 100.5 52 96.2
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.0e-20 100.5 52 96.2
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.7e-19 98.6 52 96.2
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 5.9e-19 97.4 52 94.2
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.0e-18 96.7 52 94.2
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 2.2e-18 95.5 52 90.4
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 1.6e-16 89.4 52 88.5
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 3.6e-16 88.2 52 88.5
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 8.0e-16 87.0 83 59.0
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 8.0e-16 87.0 83 59.0
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 5.2e-15 84.3 52 82.7
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 5.2e-15 84.3 52 82.7
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 6.8e-15 84.0 52 80.8
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 8.8e-15 83.6 52 82.7
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 8.8e-15 83.6 52 80.8
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 8.8e-15 83.6 52 80.8
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 2.0e-14 82.4 52 82.7
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 3.4e-14 81.6 52 78.8
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 3.4e-14 81.6 52 80.8
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 4.4e-14 81.3 52 80.8
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 4.4e-14 81.3 52 80.8
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 4.4e-14 81.3 58 74.1
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 4.4e-14 81.3 52 78.8
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 4.4e-14 81.3 52 80.8
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 4.4e-14 81.3 52 80.8
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 5.7e-14 80.9 52 80.8
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 5.7e-14 80.9 52 80.8
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 5.7e-14 80.9 52 78.8
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 9.8e-14 80.1 52 80.8
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 9.8e-14 80.1 52 82.7
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 9.8e-14 80.1 52 78.8
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 9.8e-14 80.1 52 80.8
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 9.8e-14 80.1 52 80.8
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 9.8e-14 80.1 52 78.8
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.3e-13 79.7 52 80.8
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.7e-13 79.3 52 78.8
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 2.2e-13 79.0 52 76.9
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 2.2e-13 79.0 52 76.9
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 2.2e-13 79.0 52 78.8
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 2.2e-13 79.0 52 78.8
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 2.2e-13 79.0 52 82.7
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 2.2e-13 79.0 52 76.9
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 2.2e-13 79.0 52 80.8
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 3.7e-13 78.2 52 78.8
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 3.7e-13 78.2 52 78.8
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 3.7e-13 78.2 52 76.9
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 4.9e-13 77.8 52 76.9
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 4.9e-13 77.8 52 76.9
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 4.9e-13 77.8 52 76.9
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 4.9e-13 77.8 52 78.8
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 4.9e-13 77.8 52 78.8
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 6.3e-13 77.4 52 76.9
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 6.3e-13 77.4 52 75.0
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 6.3e-13 77.4 52 75.0
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 6.3e-13 77.4 52 75.0
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 8.3e-13 77.0 52 73.1
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 8.3e-13 77.0 52 76.9
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.1e-12 76.6 52 75.0
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 1.1e-12 76.6 52 75.0
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.4e-12 76.3 52 76.9
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 1.8e-12 75.9 52 73.1
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 1.8e-12 75.9 52 75.0
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 2.4e-12 75.5 52 71.2
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 2.4e-12 75.5 52 73.1
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 3.1e-12 75.1 52 69.2
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 4.1e-12 74.7 52 73.1
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 4.1e-12 74.7 52 75.0
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 4.1e-12 74.7 52 75.0
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 4.1e-12 74.7 52 69.2
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 5.4e-12 74.3 52 71.2
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 5.4e-12 74.3 52 73.1
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 5.4e-12 74.3 52 73.1
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 9.2e-12 73.6 52 73.1
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 1.2e-11 73.2 52 73.1
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 1.2e-11 73.2 52 73.1
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 1.6e-11 72.8 52 69.2
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.6e-11 72.8 52 69.2
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 1.6e-11 72.8 52 69.2
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 2.0e-11 72.4 52 71.2
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 2.7e-11 72.0 52 71.2
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 4.5e-11 71.2 52 67.3
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 4.5e-11 71.2 52 71.2
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 4.5e-11 71.2 52 69.2
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 4.5e-11 71.2 52 73.1
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 5.9e-11 70.9 90 45.6
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 7.8e-11 70.5 52 71.2
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 7.8e-11 70.5 52 71.2
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.0e-10 70.1 90 45.6
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.0e-10 70.1 90 45.6
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.0e-10 70.1 52 67.3
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.0e-10 70.1 52 69.2
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 1.0e-10 70.1 52 71.2
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 1.0e-10 70.1 52 71.2
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 1.3e-10 69.7 79 53.2
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 2.3e-10 68.9 52 67.3
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 2.3e-10 68.9 52 73.1
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.9e-10 68.6 52 67.3
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 6.6e-10 67.4 52 67.3
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 1.1e-09 66.6 52 65.4
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 1.9e-09 65.9 46 73.9
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 4.3e-09 64.7 52 63.5
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 7.3e-09 63.9 46 71.7
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 9.5e-09 63.5 51 64.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 2.1e-08 62.4 51 62.7


User provided reference genes

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