Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 4.2e-181 637.9 321 100.0
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 5.2e-179 630.9 321 98.8
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 2.2e-177 625.5 321 98.1
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.6e-172 609.4 321 96.6
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 2.3e-171 605.5 321 96.3
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 1.1e-157 560.1 323 89.2
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 1.7e-129 466.5 327 76.5
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 4.9e-121 438.3 327 72.5
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 1.1e-115 420.6 328 70.1
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 2.1e-111 406.4 327 67.9
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 3.7e-108 395.6 326 66.9
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 3.8e-105 385.6 325 65.2
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 1.9e-104 383.3 328 64.0
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 7.2e-104 381.3 328 64.6
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 1.6e-103 380.2 328 63.4
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 2.3e-102 376.3 326 65.3
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 3.0e-102 375.9 326 64.7
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 3.0e-102 375.9 328 64.0
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 5.7e-101 371.7 326 64.4
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 7.4e-101 371.3 325 65.2
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 3.7e-100 369.0 323 64.4
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 6.3e-100 368.2 319 66.1
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 6.3e-100 368.2 323 64.4
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 1.1e-99 367.5 329 64.1
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 1.4e-99 367.1 327 63.9
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 6.9e-99 364.8 319 65.8
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 2.2e-97 359.8 329 62.0
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.2e-97 359.8 319 65.2
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 6.5e-97 358.2 329 61.7
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 8.5e-97 357.8 323 64.1
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 1.9e-96 356.7 326 62.6
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 1.8e-94 350.1 322 63.4
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 3.0e-94 349.4 316 61.7
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 3.3e-93 345.9 328 61.0
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 3.3e-93 345.9 332 61.1
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 2.2e-92 343.2 336 59.5
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 6.3e-92 341.7 336 58.0
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 1.1e-91 340.9 324 60.8
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 1.4e-91 340.5 286 67.1
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 1.2e-90 337.4 357 56.3
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 7.7e-90 334.7 344 59.3
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 2.9e-89 332.8 341 59.2
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 1.1e-88 330.9 318 54.7
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 8.0e-87 324.7 346 59.2
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 3.9e-86 322.4 326 60.4
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 1.5e-85 320.5 331 58.9
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 4.4e-85 318.9 330 58.2
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 4.8e-84 315.5 336 56.0
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 1.1e-83 314.3 327 56.9
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 1.1e-83 314.3 315 52.7
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 1.1e-83 314.3 336 55.7
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 5.3e-83 312.0 344 54.9
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 1.1e-80 304.3 319 57.7
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 9.4e-80 301.2 336 53.9
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 1.6e-79 300.4 327 56.3
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 1.8e-78 297.0 347 54.5
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 2.0e-77 293.5 332 54.5
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 2.6e-77 293.1 316 47.5
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 2.2e-76 290.0 314 49.7
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 2.8e-76 289.7 326 48.2
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 4.8e-76 288.9 315 48.9
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 1.9e-72 276.9 300 49.0
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 1.9e-72 276.9 318 54.7
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 1.4e-70 270.8 328 45.4
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 2.3e-70 270.0 347 51.3
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 4.0e-70 269.2 249 55.8
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 5.7e-69 265.4 323 45.5
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 5.7e-69 265.4 311 46.0
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 7.5e-69 265.0 300 47.3
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 2.8e-68 263.1 320 52.5
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 8.3e-68 261.5 314 52.5
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 8.3e-68 261.5 260 62.7
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 1.1e-67 261.2 318 51.6
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 1.1e-67 261.2 318 52.2
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 2.4e-67 260.0 320 51.2
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 4.1e-67 259.2 321 50.8
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 4.1e-67 259.2 332 51.8
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 2.0e-66 256.9 318 52.2
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 5.9e-66 255.4 320 50.9
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 3.8e-65 252.7 238 55.9
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 1.5e-64 250.8 318 51.6
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 9.5e-64 248.1 319 51.7
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 1.6e-63 247.3 322 49.4
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 2.1e-63 246.9 312 43.9
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 8.0e-63 245.0 303 52.1
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 1.4e-62 244.2 267 50.9
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 2.6e-61 240.0 326 43.3
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 4.4e-61 239.2 360 46.7
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 7.5e-61 238.4 318 50.3
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 1.8e-59 233.8 319 50.2
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 9.2e-59 231.5 356 44.7
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 1.2e-58 231.1 258 47.3
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 1.3e-57 227.6 281 53.7
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 2.3e-54 216.9 251 49.0
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 5.8e-53 212.2 336 37.5
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 5.8e-53 212.2 251 55.8
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 5.6e-48 195.7 333 45.6
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 6.2e-47 192.2 264 43.2
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 1.5e-40 171.0 272 40.1
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 3.6e-39 166.4 272 39.3
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 9.9e-37 158.3 269 38.7
Hma1.2p1_0589F.1_g184775 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 3.0e-33 146.7 186 44.1
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 1.4e-30 137.9 155 47.1
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 4.4e-29 132.9 291 33.3
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 7.6e-29 132.1 303 31.4
CDE02G2139 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 2.4e-22 110.5 132 48.5
ATR0421G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 2.0e-21 107.5 49 91.8
CSS0034598 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 6.4e-20 102.4 47 91.5
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 9.3e-19 98.6 164 37.8
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 2.1e-15 87.4 76 53.9
MBI05_g15342_MAGBIO Magnolia biondii HOM05D006394 ORTHO05D008057 2.9e-12 77.0 88 48.9
Sopen10g011120 Solanum pennellii HOM05D006394 ORTHO05D008057 3.2e-11 73.6 61 54.1
Os02g0203700 Oryza sativa ssp. japonica HOM05D001564 ORTHO05D001439 6.7e-09 65.9 178 30.3
Mapoly0019s0131 Marchantia polymorpha HOM05D001564 ORTHO05D001439 1.1e-08 65.1 157 30.6
vmacro05191 Vaccinium macrocarpon HOM05D001564 ORTHO05D001439 1.1e-08 65.1 163 27.0
Peaxi162Scf00341g00012 Petunia axillaris HOM05D001564 ORTHO05D001439 3.3e-08 63.5 175 29.7
Nitab4.5_0000151g0010 Nicotiana tabacum HOM05D001564 ORTHO05D001439 5.6e-08 62.8 188 27.1
MELO3C017900.2 Cucumis melo HOM05D001564 ORTHO05D001439 7.4e-08 62.4 178 28.1
MD02G1035800 Malus domestica HOM05D001564 ORTHO05D001439 9.6e-08 62.0 146 28.1
Solyc08g067180.4 Solanum lycopersicum HOM05D001564 ORTHO05D001439 9.6e-08 62.0 182 28.0
PGSC0003DMG400007381 Solanum tuberosum HOM05D001564 ORTHO05D001439 9.6e-08 62.0 181 27.6
CANSAT11G0701 Cannabis sativa HOM05D001564 ORTHO05D001439 1.3e-07 61.6 150 26.0
CsaV3_4G001400 Cucumis sativus L. HOM05D001564 ORTHO05D001439 1.3e-07 61.6 178 28.1
Nn8g39385 Nelumbo nucifera HOM05D001564 ORTHO05D001439 1.3e-07 61.6 163 28.2
Oeu048467.1 Olea europaea HOM05D006394 ORTHO05D008057 1.3e-07 61.6 95 38.9
Peaxi162Scf00641g00018 Petunia axillaris HOM05D001564 ORTHO05D001439 1.3e-07 61.6 156 29.5
Gohir.A05G125100 Gossypium hirsutum HOM05D001564 ORTHO05D001439 1.6e-07 61.2 174 26.4
Peaxi162Scf00984g00119 Petunia axillaris HOM05D001564 ORTHO05D001439 2.1e-07 60.8 149 33.6
Sed0001195 Sechium edule HOM05D001564 ORTHO05D001439 2.1e-07 60.8 175 28.0
Sopen08g021120 Solanum pennellii HOM05D001564 ORTHO05D001439 2.1e-07 60.8 183 29.0
TWI75G1763 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 2.8e-07 60.5 190 28.4
GSVIVG01035819001 Vitis vinifera HOM05D001564 ORTHO05D001439 2.8e-07 60.5 180 26.1
MSTRG.19608 Avicennia marina HOM05D001564 ORTHO05D001439 3.7e-07 60.1 153 28.1
CiPaw.08G012900 Carya illinoinensis HOM05D001564 ORTHO05D001439 3.7e-07 60.1 175 26.9
Sopen04g013620 Solanum pennellii HOM05D006394 ORTHO05D008057 4.8e-07 59.7 78 44.9
CAN.G348.2 Capsicum annuum HOM05D001564 ORTHO05D001439 6.2e-07 59.3 181 27.1
MD15G1176000 Malus domestica HOM05D001564 ORTHO05D001439 6.2e-07 59.3 146 28.1
PGR031G3637 Punica granatum HOM05D001564 ORTHO05D001439 6.2e-07 59.3 179 27.9
Solyc10g038030.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 6.2e-07 59.3 114 32.5
A07p17810 Brassica napus HOM05D001564 ORTHO05D001439 8.1e-07 58.9 155 30.3
BraA07t29501Z Brassica rapa HOM05D001564 ORTHO05D001439 8.1e-07 58.9 155 30.3
Gohir.D05G126100 Gossypium hirsutum HOM05D001564 ORTHO05D001439 8.1e-07 58.9 174 25.3
Gorai.009G130100 Gossypium raimondii HOM05D001564 ORTHO05D001439 8.1e-07 58.9 174 25.3
TAR383G0790 Trochodendron aralioides HOM05D001564 ORTHO05D001439 8.1e-07 58.9 181 26.5
CSS0036181 Camellia sinensis var. sinensis HOM05D001564 ORTHO05D001439 1.1e-06 58.5 190 26.8
ClCG07G012800 Citrullus lanatus HOM05D001564 ORTHO05D001439 1.1e-06 58.5 178 28.1
Thhalv10005026m.g Eutrema salsugineum HOM05D001564 ORTHO05D001439 1.1e-06 58.5 156 26.9
FAN09G2896 Fragaria x ananassa HOM05D001564 ORTHO05D001439 1.4e-06 58.2 186 28.5
Glyma.05G008700 Glycine max HOM05D001564 ORTHO05D001439 1.4e-06 58.2 146 27.4
Zm00001eb205550 Zea mays HOM05D001564 ORTHO05D001439 1.4e-06 58.2 150 26.0
Atru.chr1.3091 Acer truncatum HOM05D001564 ORTHO05D001439 1.8e-06 57.8 162 29.6
BcaC02g10834 Brassica carinata HOM05D001564 ORTHO05D001439 1.8e-06 57.8 152 30.3
C04p24640 Brassica napus HOM05D001564 ORTHO05D001439 1.8e-06 57.8 152 30.3
BolC4t23970H Brassica oleracea HOM05D001564 ORTHO05D001439 1.8e-06 57.8 152 30.3
CBR_g82288 Chara braunii HOM05D006394 ORTHO05D008057 1.8e-06 57.8 32 65.6
Peaxi162Scf00984g10021 Petunia axillaris HOM05D001564 ORTHO05D001439 1.8e-06 57.8 161 31.1
Sed0024738 Sechium edule HOM05D001564 ORTHO05D001439 1.8e-06 57.8 187 26.7
BcaNung07111 Brassica carinata HOM05D001564 ORTHO05D001439 2.4e-06 57.4 185 28.1
C02p59490 Brassica napus HOM05D001564 ORTHO05D001439 2.4e-06 57.4 185 28.1
CSS0037183 Camellia sinensis var. sinensis HOM05D001564 ORTHO05D001439 2.4e-06 57.4 190 26.8
Lsat_1_v5_gn_5_98101 Lactuca sativa HOM05D001564 ORTHO05D001439 2.4e-06 57.4 157 28.0
Potri.006G149900 Populus trichocarpa HOM05D001564 ORTHO05D001439 2.4e-06 57.4 153 30.1
TWI34G0224 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 2.4e-06 57.4 152 26.3
Sp4g08900 Schrenkiella parvula HOM05D001564 ORTHO05D001439 3.1e-06 57.0 152 30.3
FvH4_6g30320 Fragaria vesca HOM05D001564 ORTHO05D001439 4.0e-06 56.6 170 25.3
Lj8C624T10 Lonicera japonica HOM05D001564 ORTHO05D001439 4.0e-06 56.6 154 27.3
Prupe.7G239400 Prunus persica HOM05D001564 ORTHO05D001439 5.3e-06 56.2 146 28.1
MELO3C023401.2 Cucumis melo HOM05D001564 ORTHO05D001439 6.9e-06 55.8 187 26.7
Thecc.09G149700 Theobroma cacao HOM05D001564 ORTHO05D001439 6.9e-06 55.8 166 28.9
MELO3C026642.2 Cucumis melo HOM05D001564 ORTHO05D001439 9.0e-06 55.5 151 28.5
CsaV3_1G029820 Cucumis sativus L. HOM05D001564 ORTHO05D001439 9.0e-06 55.5 151 28.5


User provided reference genes

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