Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.8e-148 528.1 259 100.0
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 9.5e-131 470.3 232 100.0
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.9e-124 448.7 236 95.3
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.5e-123 446.4 235 94.5
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.6e-122 441.8 235 93.6
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 5.4e-102 374.8 241 79.7
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.5e-75 287.0 240 62.9
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 6.0e-69 265.0 236 58.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 2.0e-64 250.0 237 56.1
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.9e-62 243.4 242 53.7
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 4.2e-62 242.3 237 54.4
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.3e-60 237.3 240 52.5
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 6.7e-60 235.0 238 53.8
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 9.7e-59 231.1 232 50.0
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 9.7e-59 231.1 232 50.0
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-58 230.7 242 48.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-58 230.3 232 50.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.2e-58 229.9 232 49.6
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 2.4e-57 226.5 240 48.3
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 2.6e-56 223.0 161 72.0
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 3.4e-56 222.6 161 72.0
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 5.9e-56 221.9 241 49.8
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.0e-55 221.1 235 46.8
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.7e-55 220.3 238 47.5
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 5.0e-55 218.8 243 49.0
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.4e-54 217.2 235 49.8
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.5e-54 215.3 235 47.7
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 7.2e-54 214.9 242 49.2
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-53 214.2 244 48.4
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.6e-53 213.8 235 49.4
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.7e-53 213.0 235 47.2
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.7e-53 213.0 235 47.2
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.6e-53 212.2 231 49.8
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.6e-53 212.2 231 49.8
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.0e-52 209.5 227 50.7
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 3.9e-52 209.1 242 49.6
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.9e-52 209.1 240 46.2
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-51 207.6 241 47.3
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 4.3e-51 205.7 246 45.5
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.3e-51 205.7 235 48.1
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.3e-51 205.7 235 46.0
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.4e-51 204.9 235 48.1
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.4e-51 204.9 235 48.1
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 9.7e-51 204.5 245 45.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-50 204.1 246 45.1
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.2e-50 203.4 236 45.3
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.8e-50 203.0 240 45.8
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.8e-50 202.2 235 46.4
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 9.1e-49 198.0 235 46.4
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.3e-47 194.1 237 46.8
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 2.5e-46 189.9 239 45.6
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 4.2e-46 189.1 234 47.0
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.2e-45 187.6 231 45.5
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 1.6e-45 187.2 235 43.0
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.1e-45 186.8 235 43.0
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.6e-45 186.0 246 44.3
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 6.1e-45 185.3 241 44.4
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.0e-44 183.0 232 39.7
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 8.8e-44 181.4 236 41.9
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 2.2e-42 176.8 239 43.1
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 4.1e-41 172.6 247 41.7
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.5e-40 170.6 246 41.9
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 4.5e-40 169.1 240 42.5
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 1.1e-38 164.5 241 40.7
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.4e-38 164.1 235 38.3
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.5e-38 163.3 239 43.1
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.2e-37 161.0 245 40.0
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.3e-36 156.8 242 40.1
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.0e-36 156.4 240 40.8
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 8.8e-36 154.8 235 40.9
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 2.2e-34 150.2 240 37.9
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.2e-32 144.4 242 38.8
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.1e-30 137.9 243 37.9
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 3.2e-30 136.3 241 35.3
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 3.2e-30 136.3 242 36.4
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 9.4e-30 134.8 236 35.6
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.2e-29 134.4 238 36.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 6.8e-28 128.6 243 35.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 8.8e-28 128.3 244 35.2
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 8.8e-28 128.3 244 35.2
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.2e-27 127.9 247 39.3
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.5e-27 127.5 240 38.8
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.4e-27 126.3 244 34.8
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.4e-27 125.9 237 34.2
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.4e-27 125.9 238 35.3
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.7e-27 125.6 237 34.2
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.3e-26 124.4 209 38.3
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.7e-26 124.0 242 36.0
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.7e-26 124.0 244 36.9
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.2e-26 123.6 239 35.6
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 4.8e-26 122.5 240 35.8
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.3e-26 122.1 244 33.6
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.4e-25 120.9 237 33.3
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.4e-25 120.9 242 34.7
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.4e-25 120.2 203 35.5
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 2.4e-25 120.2 241 34.4
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.4e-25 120.2 243 36.6
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.2e-24 117.9 242 34.7
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.6e-24 117.5 246 36.2
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.6e-24 117.5 215 36.7
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.6e-24 117.5 223 36.3
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.0e-24 117.1 239 36.0
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.7e-24 116.7 243 35.4
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.7e-24 116.7 240 31.2
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 4.5e-24 115.9 223 35.9
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.7e-23 114.0 243 35.8
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.2e-23 113.6 245 30.6
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.8e-23 112.8 241 32.8
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.1e-22 111.3 208 36.1
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.9e-22 110.5 142 45.1
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.6e-21 107.5 244 30.7
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 2.1e-21 107.1 249 32.5
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.1e-21 107.1 243 35.0
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.7e-21 106.7 235 33.2
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 2.7e-21 106.7 242 34.3
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.1e-21 105.5 250 29.2
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 8.0e-21 105.1 216 35.6
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.0e-20 104.8 250 28.8
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.0e-20 104.8 250 28.8
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 4.0e-20 102.8 238 34.0
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 6.8e-20 102.1 239 33.1
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.6e-19 100.1 238 32.4
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 2.6e-19 100.1 239 30.5
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 3.4e-19 99.8 242 31.8
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 9.8e-19 98.2 258 28.3
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 6.3e-18 95.5 233 30.5
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 8.3e-18 95.1 240 30.4
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.8e-17 94.0 255 30.6
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 2.4e-17 93.6 249 32.1
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.1e-17 93.2 293 29.0
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 4.1e-17 92.8 241 31.5
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 4.1e-17 92.8 226 35.8
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 5.4e-17 92.4 229 28.8
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-16 91.3 247 30.4
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.0e-16 90.5 212 31.6
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.7e-16 90.1 180 37.2
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 3.5e-16 89.7 247 30.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 4.5e-16 89.4 243 30.5
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 7.7e-16 88.6 225 34.2
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.0e-15 88.2 250 30.4
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.7e-15 87.4 243 28.4
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 4.2e-14 82.8 216 30.1
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 9.5e-14 81.6 214 30.4
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.6e-13 80.9 215 30.2
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.6e-13 80.9 252 29.8
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 2.1e-13 80.5 244 28.7
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.7e-13 79.3 242 29.3
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 6.1e-13 79.0 196 31.1
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.0e-12 78.2 248 30.2
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 6.8e-12 75.5 106 35.8
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 8.9e-12 75.1 215 30.7
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 2.0e-11 73.9 218 28.4
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 3.4e-11 73.2 211 28.4


User provided reference genes

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