Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 0.0e+00 1114.4 541 100.0
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 0.0e+00 1075.5 542 97.0
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 7.6e-308 1059.7 541 95.7
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 8.5e-291 1003.0 542 90.8
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 5.1e-288 993.8 542 89.7
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.7e-252 875.2 429 97.2
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.6e-247 858.6 546 76.6
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 7.8e-244 847.0 429 94.2
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.3e-243 846.3 546 76.4
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 8.3e-230 800.4 472 79.4
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 5.2e-224 781.2 541 70.6
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 1.5e-223 779.6 535 72.7
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 4.4e-223 778.1 535 72.9
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 3.8e-222 775.0 540 70.4
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 1.4e-221 773.1 533 71.5
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 1.4e-221 773.1 537 70.8
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 4.1e-221 771.5 541 70.2
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 1.2e-220 770.0 526 70.3
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 1.6e-220 769.6 526 70.3
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.1e-220 769.2 539 70.9
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 2.1e-220 769.2 536 70.0
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 2.7e-220 768.8 478 75.3
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 3.5e-220 768.5 537 70.0
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.3e-219 766.5 542 68.3
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 6.6e-219 764.2 538 69.9
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 1.1e-218 763.5 532 69.5
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 1.5e-218 763.1 525 70.7
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 3.3e-218 761.9 483 73.9
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 2.4e-213 745.7 517 69.8
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 7.1e-213 744.2 528 67.8
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 3.9e-211 738.4 461 72.5
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 1.5e-210 736.5 461 72.2
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 4.3e-210 734.9 544 67.8
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 4.3e-210 734.9 544 67.8
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.3e-209 733.4 462 72.9
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 8.1e-209 730.7 469 74.2
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 1.4e-208 729.9 537 67.4
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 2.4e-208 729.2 530 68.5
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 3.1e-208 728.8 534 67.8
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 5.3e-208 728.0 462 72.9
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 6.9e-208 727.6 516 68.6
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 9.0e-208 727.2 537 67.2
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 1.5e-207 726.5 545 66.4
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 1.5e-207 726.5 438 76.3
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 2.0e-207 726.1 541 68.2
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 2.6e-207 725.7 547 66.2
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 3.4e-207 725.3 521 67.9
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 1.3e-206 723.4 462 73.4
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.7e-206 723.0 536 66.6
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 2.9e-206 722.2 462 73.4
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 3.8e-206 721.8 541 66.5
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.4e-205 719.9 531 65.5
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 1.4e-205 719.9 462 73.2
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 9.3e-205 717.2 457 73.3
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.6e-204 716.5 455 74.3
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.7e-204 715.7 537 65.5
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 6.7e-203 711.1 510 68.6
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 8.7e-203 710.7 460 72.6
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.5e-202 709.1 455 72.7
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 8.1e-201 704.1 482 69.5
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 4.0e-200 701.8 455 70.8
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 6.9e-200 701.0 504 67.3
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 4.5e-199 698.4 537 65.7
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 7.6e-199 697.6 497 67.4
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 9.9e-199 697.2 481 69.6
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 8.4e-198 694.1 468 69.4
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 2.4e-197 692.6 454 71.8
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 5.5e-197 691.4 428 76.2
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 5.5e-197 691.4 484 67.4
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 9.3e-197 690.6 420 75.7
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 9.3e-197 690.6 472 69.3
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 1.2e-196 690.3 447 73.8
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 7.9e-196 687.6 506 66.8
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 1.8e-195 686.4 489 65.8
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 5.1e-195 684.9 433 73.0
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 1.1e-194 683.7 476 67.6
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 1.5e-194 683.3 460 70.7
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.9e-194 682.9 502 67.3
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 9.6e-194 680.6 483 67.9
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 1.1e-192 677.2 507 65.1
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.4e-192 676.8 518 64.3
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 3.1e-192 675.6 467 69.0
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 2.9e-190 669.1 531 61.8
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 3.8e-190 668.7 424 73.3
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.5e-189 666.0 438 70.3
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 9.3e-189 664.1 450 68.7
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 1.8e-187 659.8 462 68.8
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 8.7e-187 657.5 504 62.7
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.1e-186 657.1 490 62.2
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 4.2e-181 638.6 419 72.6
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.5e-178 630.2 417 71.5
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 4.8e-177 625.2 477 61.6
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 6.3e-177 624.8 420 70.2
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 1.8e-171 606.7 448 65.8
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 6.7e-171 604.7 352 79.3
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 3.2e-149 532.7 491 52.7
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 8.8e-147 524.6 510 51.4
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 9.8e-146 521.2 458 54.1
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 5.9e-143 511.9 556 50.5
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 6.1e-140 501.9 342 68.4
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 5.7e-138 495.4 520 46.9
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 5.4e-128 462.2 423 55.6
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 3.4e-114 416.4 441 52.2
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.1e-112 411.4 367 57.8
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.4e-107 393.7 349 58.2
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 2.4e-104 383.6 475 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 6.0e-95 352.4 449 41.4
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.9e-93 347.4 202 78.7
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 1.7e-89 334.3 524 37.0
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 3.5e-87 326.6 235 67.7
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 7.6e-82 308.9 188 75.0
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 2.7e-79 300.4 502 36.3
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 4.5e-74 283.1 203 67.5
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 7.9e-71 272.3 258 56.2
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 2.8e-68 263.8 242 54.1
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 2.9e-65 253.8 150 77.3
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 5.5e-64 249.6 150 76.0
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 5.0e-41 173.3 154 58.4
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.1e-39 167.9 423 30.3
RcHm_v2.0_Chr2g0117431 Rosa chinensis HOM05D006367 ORTHO05D007942 2.0e-29 134.8 104 74.0
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 2.2e-20 104.8 68 69.1
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 8.3e-20 102.8 153 43.1
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 3.6e-15 87.4 135 45.9
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.3e-14 84.7 91 48.4
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 2.0e-13 81.6 334 21.9
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 3.4e-13 80.9 363 20.7
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 4.4e-13 80.5 315 21.6
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 5.8e-13 80.1 308 23.1
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.7e-12 78.6 295 20.3
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 2.2e-12 78.2 315 21.6
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 2.9e-12 77.8 295 19.0
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 4.9e-12 77.0 299 20.7
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 6.4e-12 76.6 294 20.1
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 6.4e-12 76.6 268 22.0
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 1.1e-11 75.9 57 68.4
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.1e-11 75.9 271 22.1
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.4e-11 75.5 265 23.8
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.9e-11 75.1 43 74.4
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.9e-11 75.1 268 22.0
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.4e-11 74.7 130 35.4
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 3.2e-11 74.3 271 21.8
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 5.4e-11 73.6 271 21.8
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.6e-10 72.0 268 20.5
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 2.7e-10 71.2 279 23.7
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 1.7e-09 68.6 288 20.8
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 2.3e-09 68.2 268 22.4
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.3e-09 68.2 160 24.4
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 3.9e-09 67.4 240 22.9


User provided reference genes

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