Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.0e-203 712.2 368 100.0
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 7.2e-201 703.7 368 99.2
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 4.4e-190 667.9 368 94.0
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 7.3e-185 650.6 373 91.2
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 3.3e-145 518.8 375 72.5
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 2.1e-144 516.2 369 74.8
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 4.2e-124 448.7 335 70.1
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 9.0e-119 431.0 376 63.0
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 2.0e-118 429.9 375 62.9
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 2.6e-118 429.5 369 63.4
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 7.6e-118 427.9 301 72.8
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.9e-116 423.3 373 62.2
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 2.5e-116 422.9 367 62.4
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 1.8e-114 416.8 360 63.1
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 2.5e-113 412.9 360 61.9
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 1.7e-112 410.2 375 60.3
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.2e-112 409.8 375 60.0
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 8.2e-112 407.9 375 59.7
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 1.4e-111 407.1 314 65.6
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 1.4e-111 407.1 314 65.6
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.4e-111 407.1 375 59.7
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 1.8e-111 406.8 327 64.8
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 4.1e-111 405.6 340 62.6
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 1.2e-110 404.1 292 69.9
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 3.4e-110 402.5 360 61.9
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 2.9e-109 399.4 340 62.9
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 3.8e-109 399.1 327 64.2
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 3.8e-109 399.1 345 60.9
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 5.0e-109 398.7 376 58.0
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 8.5e-109 397.9 335 63.0
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 1.1e-108 397.5 290 70.0
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.9e-108 396.7 335 62.1
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 5.5e-108 395.2 366 59.0
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 7.2e-108 394.8 362 61.0
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 2.7e-107 392.9 338 61.2
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 2.7e-107 392.9 374 58.6
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 1.4e-106 390.6 357 60.2
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 1.4e-106 390.6 357 61.1
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 5.1e-106 388.7 358 59.5
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 2.6e-105 386.3 305 66.6
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 4.4e-105 385.6 354 60.5
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 5.7e-105 385.2 330 61.2
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 5.7e-105 385.2 382 56.0
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 1.3e-104 384.0 366 59.0
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 2.2e-104 383.3 321 59.8
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 2.2e-104 383.3 355 59.2
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 2.8e-104 382.9 371 55.8
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 4.8e-104 382.1 370 58.9
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 1.8e-103 380.2 377 57.6
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 1.8e-103 380.2 330 61.2
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 4.1e-103 379.0 363 57.0
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 5.3e-103 378.6 351 59.8
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 7.0e-103 378.3 329 58.1
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 7.0e-103 378.3 330 57.9
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 7.0e-103 378.3 330 61.2
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 9.1e-103 377.9 335 57.0
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 1.2e-102 377.5 334 61.1
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 2.6e-102 376.3 330 60.9
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.3e-101 374.0 363 58.4
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 1.7e-101 373.6 318 59.1
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.1e-100 370.9 366 57.9
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 1.4e-100 370.5 315 59.4
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 1.4e-100 370.5 315 59.4
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 2.1e-99 366.7 354 56.5
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 2.7e-99 366.3 360 57.8
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 2.7e-99 366.3 366 56.8
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 4.7e-99 365.5 368 54.1
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 8.0e-99 364.8 338 57.1
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.4e-98 364.0 358 55.6
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.8e-98 363.6 376 54.5
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 2.6e-97 359.8 333 57.4
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 3.3e-97 359.4 383 53.0
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 2.8e-96 356.3 384 52.6
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 6.3e-96 355.1 372 53.5
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 2.4e-95 353.2 281 62.3
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 3.1e-95 352.8 377 54.1
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 5.3e-95 352.1 333 56.8
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 5.0e-93 345.5 322 54.7
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 6.5e-93 345.1 391 53.2
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.9e-92 343.6 366 52.2
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 7.2e-92 341.7 365 52.6
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 1.4e-90 337.4 334 52.1
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 1.2e-89 334.3 365 53.2
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 2.2e-88 330.1 371 52.3
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 7.0e-87 325.1 372 52.2
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 3.5e-86 322.8 371 48.2
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 1.4e-82 310.8 243 67.5
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 1.8e-82 310.5 288 55.6
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.5e-81 307.4 265 58.1
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 4.8e-80 302.4 294 54.8
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 6.3e-80 302.0 293 55.3
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 2.4e-79 300.1 368 49.2
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 3.5e-78 296.2 287 58.5
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 9.5e-76 288.1 373 47.5
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.4e-71 273.5 319 48.6
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 1.9e-68 263.8 321 47.4
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.0e-66 258.1 293 46.4
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 7.5e-65 251.9 319 45.1
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 1.4e-63 247.7 310 43.5
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 4.1e-63 246.1 216 62.5
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 3.0e-61 240.0 234 55.1
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 6.8e-58 228.8 226 58.4
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 1.6e-54 217.6 351 41.3
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 1.0e-53 214.9 349 41.0
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 1.3e-53 214.5 327 42.2
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.7e-53 214.2 364 39.0
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 4.7e-51 206.1 238 52.5
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 6.2e-51 205.7 286 45.8
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 7.5e-49 198.7 243 47.3
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 1.4e-47 194.5 173 61.3
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 9.2e-47 191.8 259 47.9
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 1.3e-45 188.0 315 38.4
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 3.9e-45 186.4 305 38.4
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 8.9e-42 175.3 115 67.0
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 4.4e-41 172.9 286 39.2
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 3.8e-40 169.9 117 66.7
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 5.6e-36 156.0 127 64.6
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 9.6e-36 155.2 107 67.3
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 2.1e-35 154.1 143 53.8
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 4.0e-34 149.8 167 49.1
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.2e-32 144.1 75 92.0
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 1.3e-29 134.8 126 60.3
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 3.1e-26 123.6 234 37.2
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 1.5e-25 121.3 73 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 7.1e-23 112.5 216 33.3
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 9.3e-23 112.1 125 48.0
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 3.0e-21 107.1 69 69.6
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 9.6e-20 102.1 67 68.7
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 3.1e-18 97.1 67 65.7
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 7.6e-17 92.4 53 75.5
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 9.9e-17 92.0 55 74.5
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 1.9e-15 87.8 68 72.1
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 7.1e-15 85.9 68 72.1
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 2.3e-13 80.9 88 53.4
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 6.7e-13 79.3 133 34.6
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 9.6e-12 75.5 105 41.9
MD15G1236500 Malus domestica HOM05D005912 ORTHO05D249235 4.2e-07 60.1 47 68.1


User provided reference genes

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