Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 0.0e+00 1380.5 696 100.0
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 0.0e+00 1325.1 699 96.3
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 0.0e+00 1320.4 699 95.9
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 0.0e+00 1318.5 699 95.6
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 0.0e+00 1307.0 696 95.1
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 0.0e+00 1172.1 697 86.4
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 4.9e-283 977.6 708 72.0
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.3e-272 943.0 708 70.2
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 2.5e-242 842.4 717 62.3
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.4e-236 822.0 722 61.8
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 6.5e-235 817.8 720 61.0
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.1e-229 800.4 713 60.0
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 2.0e-228 796.2 727 60.1
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 8.0e-225 784.3 712 59.4
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 2.0e-223 779.6 704 58.5
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 7.4e-223 777.7 717 58.2
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 7.4e-223 777.7 726 57.6
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 2.4e-221 772.7 717 57.6
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 2.0e-220 769.6 716 57.3
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 3.5e-220 768.8 726 58.0
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 4.5e-220 768.5 725 57.4
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 5.9e-220 768.1 719 56.9
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 5.9e-220 768.1 726 58.4
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.0e-219 767.3 713 57.4
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.3e-219 766.9 714 57.6
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.5e-218 763.5 722 56.6
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.5e-218 763.5 723 56.8
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.9e-218 763.1 723 56.8
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 3.2e-218 762.3 749 55.5
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 3.2e-218 762.3 718 59.6
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 9.4e-218 760.8 720 56.9
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 4.7e-217 758.4 711 56.8
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 8.0e-217 757.7 699 57.5
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.4e-216 756.9 709 57.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.3e-215 752.3 723 55.6
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.3e-214 750.4 728 55.9
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 2.8e-214 749.2 723 55.5
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 8.2e-214 747.7 697 56.7
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.8e-213 746.5 709 57.1
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 2.4e-213 746.1 733 55.0
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 2.7e-212 742.7 724 54.8
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.9e-211 739.2 721 55.6
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.8e-211 738.8 720 55.0
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 5.0e-211 738.4 716 59.2
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.1e-210 737.3 718 57.9
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 5.5e-210 734.9 720 55.8
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 5.7e-207 724.9 731 55.0
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 4.8e-206 721.8 700 55.3
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.7e-203 713.4 734 53.5
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 6.6e-203 711.4 700 53.9
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 8.9e-200 701.0 698 55.0
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 8.3e-198 694.5 739 50.5
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 8.3e-198 694.5 704 53.7
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 7.0e-197 691.4 725 52.4
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.2e-196 690.6 730 52.5
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.0e-196 689.9 707 53.2
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 7.8e-196 688.0 718 52.9
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 3.8e-195 685.6 670 54.3
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 8.6e-195 684.5 730 52.1
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 4.0e-192 675.6 750 50.9
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.5e-191 673.7 724 52.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 4.4e-191 672.2 728 51.5
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 5.8e-191 671.8 633 58.8
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 8.3e-190 667.9 698 51.9
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.4e-189 667.2 705 52.5
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 7.0e-189 664.8 707 51.1
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.1e-184 651.0 697 51.5
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 2.3e-184 649.8 719 49.5
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.3e-182 644.0 726 50.3
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 2.2e-182 643.3 726 49.6
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 2.9e-182 642.9 724 49.0
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.9e-182 642.9 692 51.6
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.4e-181 640.6 728 49.6
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 2.4e-181 639.8 711 49.9
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 3.2e-181 639.4 718 50.0
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 9.2e-181 637.9 726 49.4
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 6.0e-180 635.2 699 49.8
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 6.0e-180 635.2 736 48.1
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 6.0e-180 635.2 629 57.1
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 7.8e-180 634.8 734 48.6
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.3e-179 634.0 634 54.9
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 3.9e-179 632.5 721 49.1
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 5.1e-179 632.1 721 49.0
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 3.3e-178 629.4 699 48.9
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 5.6e-178 628.6 724 49.3
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 7.3e-178 628.2 716 48.7
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.2e-177 627.5 702 48.9
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.6e-177 627.1 719 49.0
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.1e-176 624.4 740 48.8
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.1e-176 624.4 629 55.3
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 3.1e-176 622.9 731 48.2
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 6.8e-176 621.7 724 48.8
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.4e-175 619.0 703 49.1
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 7.5e-175 618.2 721 48.8
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 9.9e-175 617.8 719 48.4
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 4.9e-174 615.5 618 52.6
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.1e-173 614.4 720 49.2
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.6e-172 610.5 707 47.8
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.6e-172 610.5 733 48.4
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 2.3e-171 606.7 766 46.0
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 5.6e-170 602.1 601 54.4
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 5.8e-167 592.0 694 47.3
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 9.9e-167 591.3 671 48.7
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 4.9e-166 589.0 708 47.3
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 3.2e-165 586.3 670 49.0
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 1.2e-164 584.3 796 44.5
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.5e-159 567.4 623 52.5
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 2.6e-159 566.6 629 48.5
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.2e-158 563.5 696 46.1
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 2.9e-150 536.6 692 44.8
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.7e-148 530.0 776 41.1
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.0e-147 528.1 544 54.6
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.2e-135 488.0 506 51.4
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.4e-133 481.1 649 43.1
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.2e-126 457.2 673 41.9
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.5e-117 426.0 702 39.2
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 5.5e-117 426.0 825 35.4
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.2e-116 424.9 762 38.5
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.3e-114 416.8 762 36.4
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 4.1e-112 409.8 736 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.1e-88 332.0 479 39.5
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.7e-81 308.1 553 35.8
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 7.8e-79 299.3 867 29.3
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.7e-71 274.2 525 34.7
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 4.3e-69 266.9 663 30.8
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.3e-61 240.4 436 36.7
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.3e-57 228.8 214 56.1
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.1e-44 184.9 224 42.4
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 8.4e-41 172.9 128 66.4
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.1e-37 162.5 164 54.9
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.5e-37 161.4 129 60.5
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.6e-37 160.2 213 43.2
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 1.3e-36 159.1 95 75.8
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 6.9e-35 153.3 98 75.5
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 7.6e-34 149.8 296 34.1
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.1e-31 141.7 95 68.4
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 5.1e-30 137.1 133 52.6
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 5.1e-30 137.1 131 55.0
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 4.1e-19 100.9 93 54.8
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.2e-15 89.4 247 32.4
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 2.7e-15 88.2 74 51.4
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 3.4e-10 71.2 111 39.6
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 1.7e-09 68.9 436 23.4
DCAR_018746 Daucus carota HOM05D001312 ORTHO05D001832 1.4e-08 65.9 186 29.6
Solyc11g066780.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 1.4e-08 65.9 195 29.2
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 3.2e-08 64.7 164 29.3
Sopen11g026500 Solanum pennellii HOM05D001312 ORTHO05D001832 4.2e-08 64.3 195 28.7
Migut.N02523 Erythranthe guttata HOM05D001312 ORTHO05D001832 9.4e-08 63.2 160 30.0
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 1.2e-07 62.8 161 31.1
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 1.6e-07 62.4 160 28.1
Psat5g255240 Pisum sativum HOM05D001312 ORTHO05D001832 2.1e-07 62.0 215 28.4
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 2.1e-07 62.0 177 33.3
RcHm_v2.0_Chr5g0055621 Rosa chinensis HOM05D001312 ORTHO05D001832 2.7e-07 61.6 159 31.4
MSTRG.21070 Avicennia marina HOM05D001312 ORTHO05D001832 6.1e-07 60.5 197 27.9
Atru.chr6.2869 Acer truncatum HOM05D001439 ORTHO05D002726 1.0e-06 59.7 80 40.0
AagrBONN_evm.TU.Sc2ySwM_344.3436 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.4e-06 59.3 52 51.9
FAN16G2071 Fragaria x ananassa HOM05D001312 ORTHO05D001832 1.4e-06 59.3 249 26.1
CAN.G644.40 Capsicum annuum HOM05D001312 ORTHO05D001832 1.8e-06 58.9 195 28.2
CiPaw.03G181600 Carya illinoinensis HOM05D001439 ORTHO05D002726 1.8e-06 58.9 264 26.1
Cc01_g09930 Coffea canephora HOM05D001312 ORTHO05D001832 2.3e-06 58.5 197 27.9
THA.LOC104801160 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 2.3e-06 58.5 82 37.8
unitig_37.g12875 Utricularia gibba HOM05D001439 ORTHO05D002726 2.3e-06 58.5 86 40.7
FAN21G2146 Fragaria x ananassa HOM05D001312 ORTHO05D001832 3.9e-06 57.8 266 25.9
Glyma.13G320100 Glycine max HOM05D001312 ORTHO05D001832 5.1e-06 57.4 159 29.6
Nitab4.5_0000442g0240 Nicotiana tabacum HOM05D001312 ORTHO05D001832 5.1e-06 57.4 162 28.4
Nitab4.5_0002571g0030 Nicotiana tabacum HOM05D001312 ORTHO05D001832 5.1e-06 57.4 160 27.5
Peaxi162Scf00789g00216 Petunia axillaris HOM05D001312 ORTHO05D001832 5.1e-06 57.4 195 28.7
Solyc06g074640.2 Solanum lycopersicum HOM05D001312 ORTHO05D001832 5.1e-06 57.4 171 29.2
FvH4_3g30100 Fragaria vesca HOM05D001312 ORTHO05D001832 6.7e-06 57.0 177 28.2
FAN11G4030 Fragaria x ananassa HOM05D001312 ORTHO05D001832 6.7e-06 57.0 177 28.2
Nitab4.5_0004926g0010 Nicotiana tabacum HOM05D001312 ORTHO05D001832 6.7e-06 57.0 208 28.4
PSO063G1518 Papaver somniferum HOM05D001312 ORTHO05D001832 6.7e-06 57.0 213 25.8
Potri.004G189600 Populus trichocarpa HOM05D001312 ORTHO05D001832 6.7e-06 57.0 159 30.8
Dinv06859 Davidia involucrata HOM05D001439 ORTHO05D002726 8.8e-06 56.6 85 37.6
Migut.D02327 Erythranthe guttata HOM05D001312 ORTHO05D001832 8.8e-06 56.6 235 26.0
FAN25G0002 Fragaria x ananassa HOM05D001312 ORTHO05D001832 8.8e-06 56.6 266 25.9
Medtr4g088375 Medicago truncatula HOM05D001439 ORTHO05D002726 8.8e-06 56.6 280 25.4
Sopen06g031060 Solanum pennellii HOM05D001312 ORTHO05D001832 8.8e-06 56.6 171 29.2


User provided reference genes

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