Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 7.7e-67 256.9 122 100.0
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.0e-30 136.0 131 57.3
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.0e-30 136.0 131 56.5
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 2.6e-30 135.6 131 56.5
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.6e-30 135.6 131 56.5
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 4.4e-30 134.8 131 56.5
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 4.4e-30 134.8 131 56.5
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 7.6e-30 134.0 131 55.7
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 1.7e-29 132.9 130 56.2
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 1.5e-22 109.8 136 46.3
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 1.7e-21 106.3 135 45.9
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 1.2e-19 100.1 136 42.6
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 3.5e-19 98.6 136 42.6
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 1.9e-17 92.8 141 41.1
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 1.9e-17 92.8 141 39.7
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 1.9e-17 92.8 142 38.7
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 5.6e-17 91.3 141 40.4
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 7.3e-17 90.9 145 39.3
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 9.6e-17 90.5 138 42.0
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 9.6e-17 90.5 145 38.6
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 1.3e-16 90.1 132 42.4
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 1.3e-16 90.1 136 39.7
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 3.6e-16 88.6 136 39.0
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 3.6e-16 88.6 136 39.7
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 3.6e-16 88.6 141 38.3
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 1.1e-15 87.0 135 42.2
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 2.4e-15 85.9 147 36.1
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 3.1e-15 85.5 147 36.1
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 4.0e-15 85.1 147 35.4
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 4.0e-15 85.1 135 38.5
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 5.3e-15 84.7 149 36.9
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 5.3e-15 84.7 137 38.7
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 9.0e-15 84.0 136 39.7
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 9.0e-15 84.0 69 56.5
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 9.9e-14 80.5 66 54.5
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 1.3e-13 80.1 136 38.2
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 1.7e-13 79.7 77 50.6
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 2.9e-13 79.0 66 54.5
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 3.8e-13 78.6 132 38.6
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 4.9e-13 78.2 135 35.6
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 4.9e-13 78.2 136 36.0
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 6.4e-13 77.8 66 54.5
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 8.4e-13 77.4 71 52.1
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 1.1e-12 77.0 72 50.0
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 1.4e-12 76.6 70 51.4
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 1.4e-12 76.6 48 70.8
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 1.9e-12 76.3 136 36.0
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 3.2e-12 75.5 70 51.4
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 4.2e-12 75.1 66 56.1
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 4.2e-12 75.1 47 72.3
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 5.4e-12 74.7 70 50.0
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 5.4e-12 74.7 136 34.6
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.4e-12 74.7 146 34.9
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 7.1e-12 74.3 70 50.0
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 7.1e-12 74.3 70 50.0
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 7.1e-12 74.3 70 50.0
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 7.1e-12 74.3 70 51.4
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 7.1e-12 74.3 157 35.0
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 9.3e-12 73.9 160 31.9
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 1.2e-11 73.6 95 44.2
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 1.2e-11 73.6 70 51.4
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 1.6e-11 73.2 70 50.0
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 2.1e-11 72.8 88 42.0
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 2.1e-11 72.8 88 42.0
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 6.0e-11 71.2 70 50.0
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 6.0e-11 71.2 136 33.1
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 3.0e-10 68.9 71 43.7
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 5.1e-10 68.2 138 36.2
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 5.1e-10 68.2 136 33.1
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 5.1e-10 68.2 63 50.8
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 5.1e-10 68.2 63 50.8
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 6.7e-10 67.8 55 56.4
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 8.7e-10 67.4 70 47.1
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.1e-09 67.0 63 49.2
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 1.5e-09 66.6 77 48.1
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 4.3e-09 65.1 139 30.9
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 4.3e-09 65.1 136 30.1
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 7.4e-09 64.3 88 40.9
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 9.6e-09 63.9 134 34.3
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 2.1e-08 62.8 138 29.7
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 2.1e-08 62.8 55 47.3
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 2.8e-08 62.4 48 56.2
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 3.7e-08 62.0 137 33.6
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 2.4e-07 59.3 70 41.4
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 3.1e-07 58.9 55 43.6
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.0e-07 58.5 55 43.6
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 5.3e-07 58.2 135 26.7
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.2e-06 57.0 81 35.8
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 7.6e-06 54.3 65 41.5


User provided reference genes

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