Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.0e-162 575.9 326 100.0
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 2.6e-154 548.9 326 90.5
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.6e-154 548.9 326 90.5
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 3.8e-145 518.5 329 89.4
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.1e-144 516.9 326 92.3
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 1.4e-126 456.8 327 78.3
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 5.7e-125 451.4 332 77.1
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 9.1e-123 444.1 321 76.6
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.6e-119 432.2 281 88.6
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 4.0e-118 428.7 310 73.2
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.5e-117 426.8 295 74.6
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 3.4e-117 425.6 295 74.6
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 9.8e-117 424.1 295 71.9
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 9.8e-117 424.1 254 81.5
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 4.9e-116 421.8 295 76.3
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 1.8e-115 419.9 292 75.3
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 2.7e-114 416.0 258 74.0
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 1.3e-113 413.7 254 75.2
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 1.7e-113 413.3 295 66.4
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 3.8e-113 412.1 295 68.8
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 5.0e-113 411.8 258 74.4
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 5.6e-112 408.3 256 78.5
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 4.7e-111 405.2 254 74.0
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 8.0e-111 404.4 255 74.5
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 3.0e-110 402.5 295 64.4
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 4.0e-110 402.1 258 73.3
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 2.0e-109 399.8 256 71.1
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 7.5e-109 397.9 258 74.4
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 2.2e-108 396.4 258 70.5
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 1.1e-107 394.0 254 70.9
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 2.4e-107 392.9 255 72.9
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 4.1e-107 392.1 257 75.1
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 2.7e-106 389.4 258 75.2
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 2.7e-106 389.4 257 72.8
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 9.5e-104 380.9 333 60.1
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 6.2e-103 378.3 258 66.7
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 4.0e-102 375.6 295 70.5
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 5.2e-102 375.2 287 68.3
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 5.8e-101 371.7 255 73.3
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 5.8e-101 371.7 360 59.7
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.2e-99 365.9 238 70.6
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 3.2e-99 365.9 299 57.5
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 2.0e-98 363.2 298 61.4
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 4.6e-98 362.1 295 67.8
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 6.0e-98 361.7 295 68.5
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 1.3e-97 360.5 295 63.7
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 3.9e-97 359.0 299 61.9
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 3.9e-97 359.0 240 69.6
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 1.1e-96 357.5 251 64.5
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 1.5e-96 357.1 299 61.9
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 2.5e-96 356.3 254 65.7
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 7.3e-96 354.8 322 60.6
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 1.2e-95 354.0 297 59.9
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 1.2e-95 354.0 258 69.0
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 2.6e-93 346.3 224 75.0
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.6e-93 346.3 220 71.8
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 2.6e-93 346.3 240 67.5
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 3.4e-93 345.9 325 64.3
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 4.4e-93 345.5 238 67.6
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 7.5e-93 344.7 218 72.9
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 2.9e-92 342.8 325 66.5
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 3.7e-92 342.4 325 66.2
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 3.7e-92 342.4 299 67.9
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 4.9e-92 342.0 314 66.9
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 6.4e-92 341.7 325 66.5
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 8.3e-92 341.3 299 69.2
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 1.9e-91 340.1 325 66.2
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 4.1e-91 339.0 296 68.2
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 9.2e-91 337.8 321 65.7
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 2.7e-90 336.3 258 62.4
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 1.6e-87 327.0 294 57.5
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 3.1e-86 322.8 189 81.0
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 1.5e-85 320.5 206 80.6
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 2.7e-82 309.7 240 60.0
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 3.0e-81 306.2 193 75.6
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 1.5e-80 303.9 205 69.3
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 7.3e-80 301.6 189 76.2
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 1.8e-78 297.0 273 63.4
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 3.1e-78 296.2 206 71.4
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 1.5e-77 293.9 284 52.8
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 9.3e-75 284.6 252 54.8
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 9.3e-75 284.6 289 55.7
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 2.1e-74 283.5 285 56.1
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 3.3e-72 276.2 258 59.7
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 4.3e-72 275.8 258 57.8
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.1e-70 271.2 241 61.4
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 4.0e-70 269.2 258 51.6
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 6.9e-70 268.5 187 73.3
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 9.0e-70 268.1 258 52.7
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 3.5e-66 256.1 249 53.0
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 4.6e-66 255.8 248 57.7
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.3e-65 254.2 155 71.0
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 1.1e-64 251.1 155 74.2
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 1.6e-63 247.3 253 51.8
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 4.0e-62 242.7 307 48.9
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 6.4e-60 235.3 193 61.1
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 2.7e-58 229.9 196 62.2
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 4.6e-58 229.2 255 52.2
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 9.6e-56 221.5 190 60.0
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 4.8e-55 219.2 158 70.9
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 3.4e-53 213.0 209 56.9
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.1e-51 208.0 126 76.2
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.6e-50 204.1 257 42.4
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 3.5e-50 203.0 136 73.5
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 1.5e-48 197.6 238 51.3
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.5e-48 197.6 221 51.6
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 6.9e-46 188.7 124 67.7
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 1.5e-45 187.6 126 74.6
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 2.0e-45 187.2 248 40.3
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 7.9e-42 175.3 259 41.7
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 9.7e-40 168.3 141 63.1
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 4.1e-38 162.9 167 71.3
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 2.2e-36 157.1 295 35.6
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 1.4e-35 154.5 132 58.3
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 1.9e-35 154.1 105 72.4
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 2.7e-34 150.2 259 38.2
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.3e-31 141.4 110 61.8
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 1.4e-30 137.9 91 70.3
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 1.2e-29 134.8 91 69.2
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 7.7e-29 132.1 248 32.7
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 2.2e-28 130.6 91 64.8
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 2.3e-25 120.6 121 52.1
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 8.8e-25 118.6 120 54.2
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 2.9e-20 103.6 58 86.2
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 8.5e-20 102.1 68 72.1
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 5.5e-19 99.4 80 58.8
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 6.1e-18 95.9 58 65.5
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 2.0e-16 90.9 70 62.9
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.0e-16 90.9 65 67.7
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 6.3e-15 85.9 191 36.1
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 1.4e-14 84.7 51 74.5
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 1.3e-12 78.2 63 61.9
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 3.2e-11 73.6 51 66.7
C01p09890 Brassica napus HOM05D006034 ORTHO05D041974 1.4e-06 58.2 38 73.7


User provided reference genes

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