Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1617 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.5e-52 208.4 98 100.0
FvH4_1g24830 Fragaria vesca HOM05D003604 ORTHO05D004110 8.4e-48 193.4 93 94.6
FAN19G0122 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.2e-46 189.5 93 92.5
FvH4_1g24790 Fragaria vesca HOM05D003604 ORTHO05D004110 3.5e-46 188.0 93 91.4
FAN19G2257 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.0e-45 186.4 93 91.4
FAN23G2626 Fragaria x ananassa HOM05D003604 ORTHO05D004110 5.7e-44 180.6 93 89.2
FvH4_2g07580 Fragaria vesca HOM05D003604 ORTHO05D004110 6.3e-43 177.2 97 83.5
RcHm_v2.0_Chr5g0036961 Rosa chinensis HOM05D003604 ORTHO05D004110 3.1e-42 174.9 93 82.8
FvH4_3g21511 Fragaria vesca HOM05D003604 ORTHO05D004110 9.0e-42 173.3 93 81.7
FAN11G1546 Fragaria x ananassa HOM05D000073 ORTHO05D004110 9.0e-42 173.3 93 81.7
MD11G1230000 Malus domestica HOM05D003604 ORTHO05D004110 1.5e-41 172.6 93 82.8
FvH4_2g07650 Fragaria vesca HOM05D003604 ORTHO05D004110 2.0e-41 172.2 93 84.9
FAN15G1062 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.0e-41 172.2 93 84.9
FAN16G3577 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.0e-41 172.2 93 80.6
FAN22G2085 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.0e-41 172.2 93 84.9
FAN24G2186 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.0e-41 172.2 93 84.9
FAN15G2058 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.6e-41 171.8 93 83.9
Cpa.g.sc80.125 Carica papaya HOM05D003604 ORTHO05D004110 4.5e-41 171.0 93 80.6
Cfa020470 Carpinus fangiana HOM05D003604 ORTHO05D004110 1.0e-40 169.9 93 80.6
COL.COLO4_09536 Corchorus olitorius HOM05D003604 ORTHO05D004110 1.0e-40 169.9 93 79.6
Gohir.D01G059000 Gossypium hirsutum HOM05D003604 ORTHO05D004110 1.0e-40 169.9 93 79.6
Gorai.002G080000 Gossypium raimondii HOM05D003604 ORTHO05D004110 1.0e-40 169.9 93 79.6
Gorai.013G165200 Gossypium raimondii HOM05D003604 ORTHO05D004110 1.0e-40 169.9 93 79.6
PGR031G2944 Punica granatum HOM05D003604 ORTHO05D004110 1.0e-40 169.9 93 79.6
QL08p014504 Quercus lobata HOM05D003604 ORTHO05D004110 1.0e-40 169.9 93 80.6
FvH4_6g24821 Fragaria vesca HOM05D003604 ORTHO05D004110 1.3e-40 169.5 93 79.6
Gohir.A01G072200 Gossypium hirsutum HOM05D003604 ORTHO05D004110 1.3e-40 169.5 93 79.6
Gohir.A13G142800 Gossypium hirsutum HOM05D003604 ORTHO05D004110 1.3e-40 169.5 93 79.6
MD03G1215400 Malus domestica HOM05D003604 ORTHO05D004110 1.3e-40 169.5 93 80.6
CANSAT11G1782 Cannabis sativa HOM05D003604 ORTHO05D004110 1.7e-40 169.1 93 79.6
FAN25G2942 Fragaria x ananassa HOM05D000073 ORTHO05D004110 1.7e-40 169.1 93 79.6
Glyma.08G209500 Glycine max HOM05D003604 ORTHO05D004110 1.7e-40 169.1 93 80.6
Phvul.011G146000 Phaseolus vulgaris HOM05D003604 ORTHO05D004110 1.7e-40 169.1 93 80.6
Thecc.07G059200 Theobroma cacao HOM05D003604 ORTHO05D004110 1.7e-40 169.1 93 79.6
MELO3C018155.2 Cucumis melo HOM05D003604 ORTHO05D004110 2.2e-40 168.7 93 77.4
CsaV3_3G022660 Cucumis sativus L. HOM05D003604 ORTHO05D004110 2.2e-40 168.7 93 77.4
FvH4_2g07500 Fragaria vesca HOM05D003604 ORTHO05D004110 2.2e-40 168.7 93 82.8
FAN24G1060 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.2e-40 168.7 93 82.8
VMungo1127G0543 Vigna mungo HOM05D003604 ORTHO05D004110 2.2e-40 168.7 93 79.6
Ca_26239_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 3.8e-40 167.9 93 79.6
Ca_30045_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 3.8e-40 167.9 93 79.6
Haze_09573 Corylus avellana HOM05D003604 ORTHO05D004110 3.8e-40 167.9 93 79.6
Lalb_Chr01g0006251 Lupinus albus HOM05D003604 ORTHO05D004110 3.8e-40 167.9 93 80.6
FAN24G0344 Fragaria x ananassa HOM05D003604 ORTHO05D004110 5.0e-40 167.5 93 81.7
CAN.G843.15 Capsicum annuum HOM05D003604 ORTHO05D004110 8.5e-40 166.8 93 79.6
ClCG05G014980 Citrullus lanatus HOM05D003604 ORTHO05D004110 1.1e-39 166.4 93 76.3
DCAR_010007 Daucus carota HOM05D003604 ORTHO05D004110 1.1e-39 166.4 93 78.5
Lj8C164T0 Lonicera japonica HOM05D003604 ORTHO05D004110 1.1e-39 166.4 93 80.6
THA.LOC104817889 Tarenaya hassleriana HOM05D003604 ORTHO05D004110 1.1e-39 166.4 93 78.5
BcaB04g20641 Brassica carinata HOM05D003604 ORTHO05D004110 1.4e-39 166.0 93 78.5
BcaC09g49007 Brassica carinata HOM05D003604 ORTHO05D004110 1.4e-39 166.0 93 78.5
C01p43560 Brassica napus HOM05D003604 ORTHO05D004110 1.4e-39 166.0 93 78.5
BolC1t04317H Brassica oleracea HOM05D003604 ORTHO05D004110 1.4e-39 166.0 93 78.5
Lalb_Chr03g0030231 Lupinus albus HOM05D003604 ORTHO05D004110 1.4e-39 166.0 93 79.6
CiPaw.12G124800 Carya illinoinensis HOM05D003604 ORTHO05D004110 1.9e-39 165.6 93 78.5
Nitab4.5_0000335g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 1.9e-39 165.6 93 79.6
TWI38G1923 Tripterygium wilfordii HOM05D003604 ORTHO05D004110 1.9e-39 165.6 93 77.4
AL3G34530 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 2.5e-39 165.2 93 78.5
AT3G20650 Arabidopsis thaliana HOM05D003604 ORTHO05D004110 2.5e-39 165.2 93 78.5
CSS0036620 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 2.5e-39 165.2 93 78.5
CSS0042481 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 2.5e-39 165.2 93 79.6
CSS0043024 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 2.5e-39 165.2 93 78.5
Carub.0003s2063 Capsella rubella HOM05D003604 ORTHO05D004110 2.5e-39 165.2 93 78.5
Potri.011G130100 Populus trichocarpa HOM05D003604 ORTHO05D004110 2.5e-39 165.2 93 78.5
TPR.G4607 Trifolium pratense HOM05D003604 ORTHO05D004110 2.5e-39 165.2 93 77.4
Lj1g0019007 Lotus japonicus HOM05D003604 ORTHO05D004110 3.2e-39 164.9 93 77.4
SGA_v2.0_scaffold9G05001 Striga asiatica HOM05D003604 ORTHO05D004110 3.2e-39 164.9 93 78.5
ECA240G0441 Erigeron canadensis HOM05D003604 ORTHO05D004110 4.2e-39 164.5 93 78.5
Hma1.2p1_0456F.1_g156560 Hydrangea macrophylla HOM05D003604 ORTHO05D004110 4.2e-39 164.5 93 78.5
Sed0007679 Sechium edule HOM05D003604 ORTHO05D004110 4.2e-39 164.5 93 76.3
Sed0017338 Sechium edule HOM05D003604 ORTHO05D004110 4.2e-39 164.5 93 75.3
arahy.Tifrunner.gnm1.ann1.6T0369 Arachis hypogaea HOM05D003604 ORTHO05D004110 5.5e-39 164.1 93 78.5
A01p34140 Brassica napus HOM05D003604 ORTHO05D004110 5.5e-39 164.1 93 76.3
BraA01t03518Z Brassica rapa HOM05D003604 ORTHO05D004110 5.5e-39 164.1 93 76.3
Glyma.06G263000 Glycine max HOM05D003604 ORTHO05D004110 5.5e-39 164.1 93 79.6
SalBow7G1717 Salvia bowleyana HOM05D003604 ORTHO05D004110 5.5e-39 164.1 93 76.3
BcaB06g26132 Brassica carinata HOM05D003604 ORTHO05D004110 7.2e-39 163.7 93 78.5
A05p28150 Brassica napus HOM05D003604 ORTHO05D004110 7.2e-39 163.7 93 78.5
BolC5t33080H Brassica oleracea HOM05D003604 ORTHO05D004110 7.2e-39 163.7 93 78.5
BraA05t21698Z Brassica rapa HOM05D003604 ORTHO05D004110 7.2e-39 163.7 93 78.5
Psat7g153240 Pisum sativum HOM05D003604 ORTHO05D004110 7.2e-39 163.7 93 78.5
Solyc03g118250.4 Solanum lycopersicum HOM05D003604 ORTHO05D004110 7.2e-39 163.7 93 77.4
arahy.Tifrunner.gnm1.ann1.B3WQY9 Arachis hypogaea HOM05D003604 ORTHO05D004110 9.4e-39 163.3 93 77.4
BcaC05g28298 Brassica carinata HOM05D003604 ORTHO05D004110 9.4e-39 163.3 93 77.4
Duzib268G0095 Durio zibethinus HOM05D003604 ORTHO05D004110 9.4e-39 163.3 93 77.4
AL1G58850 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 1.2e-38 162.9 93 77.4
CARHR096460 Cardamine hirsuta HOM05D003604 ORTHO05D004110 1.2e-38 162.9 93 76.3
Ciclev10008689m.g Citrus clementina HOM05D003604 ORTHO05D004110 1.2e-38 162.9 93 75.3
Thhalv10020966m.g Eutrema salsugineum HOM05D003604 ORTHO05D004110 1.6e-38 162.5 93 77.4
Nitab4.5_0000511g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 1.6e-38 162.5 93 78.5
Sopen03g037160 Solanum pennellii HOM05D003604 ORTHO05D004110 1.6e-38 162.5 93 76.3
Aa31LG10G3370 Aethionema arabicum HOM05D003604 ORTHO05D004110 2.1e-38 162.2 93 76.3
Sp3g18690 Schrenkiella parvula HOM05D003604 ORTHO05D004110 2.1e-38 162.2 93 76.3
GSVIVG01014550001 Vitis vinifera HOM05D003604 ORTHO05D004110 2.1e-38 162.2 93 76.3
C05p43600 Brassica napus HOM05D003604 ORTHO05D004110 2.7e-38 161.8 93 78.5
Cc05_g12990 Coffea canephora HOM05D003604 ORTHO05D004110 2.7e-38 161.8 93 76.3
Duzib213G0846 Durio zibethinus HOM05D003604 ORTHO05D004110 2.7e-38 161.8 93 74.2
Lj3g0004246 Lotus japonicus HOM05D003604 ORTHO05D004110 2.7e-38 161.8 93 75.3
Actinidia00329 Actinidia chinensis HOM05D003604 ORTHO05D004110 3.6e-38 161.4 93 77.4
HanXRQChr13g0407501 Helianthus annuus HOM05D003604 ORTHO05D004110 3.6e-38 161.4 93 77.4
TAR624G0573 Trochodendron aralioides HOM05D003604 ORTHO05D004110 3.6e-38 161.4 93 77.4
Manes.14G113200 Manihot esculenta HOM05D003604 ORTHO05D004110 4.6e-38 161.0 93 75.3
Prupe.4G197400 Prunus persica HOM05D003604 ORTHO05D004110 4.6e-38 161.0 91 79.1
Solyc09g005300.3 Solanum lycopersicum HOM05D003604 ORTHO05D004110 4.6e-38 161.0 93 76.3
Sopen09g001270 Solanum pennellii HOM05D003604 ORTHO05D004110 4.6e-38 161.0 93 76.3
vmacro01905 Vaccinium macrocarpon HOM05D003604 ORTHO05D004110 4.6e-38 161.0 93 74.2
Sabra11G0117500 Salix brachista HOM05D003604 ORTHO05D004110 7.9e-38 160.2 93 77.4
Atru.chr2.3131 Acer truncatum HOM05D003604 ORTHO05D004110 1.0e-37 159.8 93 77.4
CARHR041070 Cardamine hirsuta HOM05D003604 ORTHO05D004110 1.0e-37 159.8 93 76.3
Eucgr.F03392 Eucalyptus grandis HOM05D003604 ORTHO05D004110 1.0e-37 159.8 93 75.3
Medtr7g110030 Medicago truncatula HOM05D003604 ORTHO05D004110 1.8e-37 159.1 95 76.8
Medtr6g003920 Medicago truncatula HOM05D003604 ORTHO05D004110 2.3e-37 158.7 93 78.5
Atru.chr2.3114 Acer truncatum HOM05D003604 ORTHO05D004110 3.0e-37 158.3 93 76.3
CAN.G5.14 Capsicum annuum HOM05D003604 ORTHO05D004110 3.9e-37 157.9 93 75.3
Aqoxy1G03843 Aquilegia oxysepala HOM05D003604 ORTHO05D004110 8.8e-37 156.8 93 74.2
PSO832G4297 Papaver somniferum HOM05D003604 ORTHO05D004110 1.1e-36 156.4 93 74.2
AUR62029554 Chenopodium quinoa HOM05D003604 ORTHO05D004110 2.0e-36 155.6 93 69.9
AUR62034817 Chenopodium quinoa HOM05D003604 ORTHO05D004110 4.3e-36 154.5 93 68.8
Migut.H01877 Erythranthe guttata HOM05D003604 ORTHO05D004110 5.7e-36 154.1 93 73.1
AUR62041148 Chenopodium quinoa HOM05D003604 ORTHO05D004110 2.2e-35 152.1 93 68.8
PSO210G6085 Papaver somniferum HOM05D003604 ORTHO05D004110 2.2e-35 152.1 93 72.0
Sc03g0009420 Simmondsia chinensis HOM05D003604 ORTHO05D004110 2.2e-35 152.1 93 71.0
CDE05G1290 Ceratophyllum demersum HOM05D003604 ORTHO05D004110 3.7e-35 151.4 93 72.0
EL10Ac4g08013 Beta vulgaris HOM05D003604 ORTHO05D004110 4.8e-35 151.0 93 66.7
Oeu005439.1 Olea europaea HOM05D003604 ORTHO05D004110 6.3e-35 150.6 93 73.1
FvH4_2g07560 Fragaria vesca HOM05D003604 ORTHO05D004110 1.4e-34 149.4 82 81.7
FvH4_2g07570 Fragaria vesca HOM05D003604 ORTHO05D004110 1.4e-34 149.4 82 81.7
DCAR_022503 Daucus carota HOM05D003604 ORTHO05D004110 2.4e-34 148.7 114 62.3
MBI18_g38395_MAGBIO Magnolia biondii HOM05D003604 ORTHO05D004110 9.1e-34 146.7 100 68.0
Nn2g10854 Nelumbo nucifera HOM05D003604 ORTHO05D004110 1.2e-33 146.4 93 69.9
PSO675G0229 Papaver somniferum HOM05D003604 ORTHO05D004110 1.5e-33 146.0 93 71.0
HPP92_020594 Vanilla planifolia HOM05D003604 ORTHO05D004110 1.5e-33 146.0 93 68.8
Zm00001eb054690 Zea mays HOM05D003604 ORTHO05D004110 2.6e-33 145.2 93 66.7
RcHm_v2.0_Chr1g0332461 Rosa chinensis HOM05D003604 ORTHO05D004110 1.3e-32 142.9 99 70.7
Os08g0180000 Oryza sativa ssp. japonica HOM05D003604 ORTHO05D004110 2.9e-32 141.7 93 64.5
Oeu060531.1 Olea europaea HOM05D003604 ORTHO05D004110 1.1e-31 139.8 93 71.0
PSO541G3797 Papaver somniferum HOM05D003604 ORTHO05D004110 1.6e-30 136.0 93 68.8
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 4.7e-30 134.4 79 72.2
BcaC03g16005 Brassica carinata HOM05D003604 ORTHO05D004110 2.3e-29 132.1 94 67.0
Gohir.D13G147400 Gossypium hirsutum HOM05D003604 ORTHO05D004110 2.3e-29 132.1 73 76.7
ATR0721G088 Amborella trichopoda HOM05D003604 ORTHO05D004110 3.0e-29 131.7 93 62.4
CiPaw.11G180300 Carya illinoinensis HOM05D003604 ORTHO05D004110 3.0e-29 131.7 73 78.1
TAR626G0206 Trochodendron aralioides HOM05D003604 ORTHO05D004110 3.9e-29 131.3 73 79.5
Lsat_1_v5_gn_9_94841 Lactuca sativa HOM05D003604 ORTHO05D004110 1.7e-27 125.9 112 58.9
Pp3c23_20110 Physcomitrium patens HOM05D003604 ORTHO05D004110 2.8e-27 125.2 91 61.5
Peaxi162Scf00141g00107 Petunia axillaris HOM05D003604 ORTHO05D004110 6.3e-27 124.0 93 63.4
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 1.4e-26 122.9 93 62.4
arahy.Tifrunner.gnm1.ann1.QJA41V Arachis hypogaea HOM05D003604 ORTHO05D004110 1.4e-26 122.9 93 62.4
arahy.Tifrunner.gnm1.ann1.R4IE40 Arachis hypogaea HOM05D003604 ORTHO05D004110 1.4e-26 122.9 93 62.4
Mapoly0053s0007 Marchantia polymorpha HOM05D003604 ORTHO05D004110 1.4e-26 122.9 95 61.1
Manes.06G031600 Manihot esculenta HOM05D003604 ORTHO05D004110 7.0e-26 120.6 132 45.5
FvH4_2g07550 Fragaria vesca HOM05D003604 ORTHO05D004110 2.6e-25 118.6 62 88.7
BcaC05g28687 Brassica carinata HOM05D003604 ORTHO05D004110 2.5e-23 112.1 98 58.2
Hund23359 Selenicereus undatus HOM05D003604 ORTHO05D004110 1.6e-22 109.4 103 51.5
AagrBONN_evm.TU.Sc2ySwM_362.2832 Anthoceros agrestis HOM05D003604 ORTHO05D004110 6.1e-22 107.5 78 57.7
SMO266G0094 Selaginella moellendorffii HOM05D003604 ORTHO05D004110 6.7e-21 104.0 93 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4281 Anthoceros agrestis HOM05D003604 ORTHO05D004110 2.0e-20 102.4 73 57.5
PRCOL_00001408 Prasinoderma coloniale HOM05D003604 ORTHO05D004110 3.1e-18 95.1 88 46.6
CBR_g12774 Chara braunii HOM05D003604 ORTHO05D004110 9.1e-18 93.6 92 46.7
Dinv22327 Davidia involucrata HOM05D003604 ORTHO05D004110 1.2e-17 93.2 52 78.8
MCO04G471 Micromonas commoda HOM05D003604 ORTHO05D004110 5.9e-17 90.9 94 46.8
MD11G1013800 Malus domestica HOM05D003604 ORTHO05D004110 1.3e-16 89.7 54 72.2
AUR62029271 Chenopodium quinoa HOM05D003604 ORTHO05D004110 2.9e-16 88.6 97 51.5
SHI31882 Sapria himalayana HOM05D003604 ORTHO05D004110 3.0e-13 78.6 103 43.7
RcHm_v2.0_Chr4g0393431 Rosa chinensis HOM05D001291 ORTHO05D344523 7.7e-09 63.9 79 39.2
C02p37610 Brassica napus HOM05D003604 ORTHO05D004110 5.5e-07 57.8 39 66.7
BolC5t33545H Brassica oleracea HOM05D003604 ORTHO05D004110 5.5e-07 57.8 34 73.5
BolC5t33536H Brassica oleracea HOM05D003604 ORTHO05D004110 7.2e-07 57.4 34 73.5


User provided reference genes

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