Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 6.2e-173 610.9 359 100.0
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.5e-171 606.3 359 99.2
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 1.1e-169 600.1 359 90.3
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 2.0e-155 552.7 359 91.6
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.1e-150 537.0 359 86.6
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 6.7e-143 511.1 323 91.6
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.4e-140 503.4 359 86.1
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 6.5e-138 494.6 351 74.6
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 5.1e-135 485.0 352 81.5
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 6.7e-135 484.6 353 73.1
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 1.5e-134 483.4 338 82.2
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 4.4e-134 481.9 355 79.7
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 7.4e-134 481.1 358 72.9
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 1.7e-133 479.9 348 83.0
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 2.2e-133 479.6 359 78.6
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 2.8e-133 479.2 343 74.9
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 6.3e-133 478.0 351 72.6
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 1.1e-132 477.2 353 78.2
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 4.1e-132 475.3 353 80.5
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 3.5e-131 472.2 354 76.6
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 7.7e-131 471.1 352 78.7
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.7e-130 469.9 351 74.9
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 6.5e-130 468.0 358 77.7
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 1.1e-129 467.2 353 72.2
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 2.5e-129 466.1 354 71.8
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 3.2e-129 465.7 353 72.0
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 7.2e-129 464.5 351 70.1
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 1.6e-128 463.4 358 71.2
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 2.1e-128 463.0 351 70.1
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 2.1e-128 463.0 352 79.3
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 3.6e-128 462.2 343 73.2
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 6.1e-128 461.5 355 71.5
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.0e-127 460.7 350 78.3
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.0e-127 460.7 336 74.1
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.4e-127 460.3 350 78.3
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 2.3e-127 459.5 349 76.2
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.0e-127 459.1 354 70.9
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 6.7e-127 458.0 336 77.1
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.5e-126 456.8 359 70.8
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 7.4e-126 454.5 332 79.8
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.3e-125 453.8 351 78.3
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 2.2e-125 453.0 358 74.9
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 8.2e-125 451.1 346 75.1
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.4e-124 450.3 351 69.5
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 1.4e-124 450.3 344 69.8
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.1e-124 449.1 355 70.1
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 7.0e-124 448.0 337 78.3
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 7.0e-124 448.0 352 69.6
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 4.5e-123 445.3 344 72.7
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 1.0e-122 444.1 336 70.5
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 6.5e-122 441.4 341 76.2
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.5e-121 440.3 348 74.7
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 7.2e-121 438.0 355 72.1
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 9.4e-121 437.6 345 70.1
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.6e-120 436.8 346 65.9
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 2.3e-119 433.0 384 73.2
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 3.0e-119 432.6 356 67.7
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 3.0e-119 432.6 346 65.0
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 5.2e-119 431.8 340 67.9
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 5.2e-119 431.8 343 67.1
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 6.7e-119 431.4 343 67.3
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 1.2e-118 430.6 389 63.8
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 1.5e-118 430.3 356 67.7
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.4e-118 428.7 341 69.5
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.4e-118 428.7 341 69.5
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 5.7e-118 428.3 280 78.9
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.7e-117 425.6 330 71.2
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 6.3e-117 424.9 437 57.2
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.1e-116 424.1 357 66.9
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 3.1e-116 422.5 338 67.2
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 5.3e-116 421.8 332 69.3
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 1.2e-115 420.6 321 68.8
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.0e-114 417.5 349 65.3
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 1.3e-114 417.2 349 65.3
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.3e-114 417.2 349 65.0
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.3e-114 417.2 351 65.8
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 3.8e-114 415.6 349 65.0
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 8.5e-114 414.5 334 69.5
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.5e-113 413.7 349 64.5
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 1.9e-113 413.3 349 64.5
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.2e-113 412.5 349 64.8
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 1.2e-112 410.6 299 79.6
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 2.7e-112 409.5 347 63.7
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 4.7e-112 408.7 344 62.5
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 6.1e-112 408.3 368 62.2
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 8.0e-112 407.9 357 72.8
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 4.0e-111 405.6 336 74.7
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 2.6e-110 402.9 301 72.1
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.8e-108 396.7 318 73.3
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 7.0e-108 394.8 318 70.8
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.3e-106 390.6 302 67.5
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 1.5e-105 387.1 356 59.3
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 4.2e-105 385.6 325 64.6
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 5.5e-105 385.2 332 71.1
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.5e-102 377.1 302 74.5
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.5e-102 374.8 347 61.1
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 7.5e-102 374.8 275 80.4
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 1.7e-101 373.6 348 61.2
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 2.0e-99 366.7 295 75.6
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 2.9e-98 362.8 413 57.1
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 1.1e-97 360.9 245 75.5
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.9e-97 360.1 393 62.3
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 3.6e-96 355.9 301 65.1
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 6.1e-96 355.1 226 78.8
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 8.0e-96 354.8 298 65.4
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.0e-94 350.1 251 79.3
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 7.0e-92 341.7 334 61.4
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.9e-89 333.6 438 48.2
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 6.8e-87 325.1 244 83.2
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 2.2e-85 320.1 336 53.0
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.7e-82 310.5 401 48.4
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.1e-79 301.2 198 77.8
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 2.9e-77 293.1 261 65.5
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 2.1e-75 287.0 237 67.9
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 4.3e-73 279.3 200 71.0
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 2.8e-72 276.6 220 65.9
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 6.2e-72 275.4 231 64.5
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 1.4e-71 274.2 227 63.0
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 2.4e-63 246.9 150 82.7
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 3.1e-63 246.5 304 49.7
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 9.0e-63 245.0 181 80.1
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 8.4e-61 238.4 332 44.0
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 7.8e-59 231.9 324 42.0
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.3e-58 231.1 364 47.0
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 6.9e-55 218.8 322 40.7
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.6e-51 207.6 148 69.6
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 6.7e-42 175.6 170 70.0
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.6e-40 171.0 127 70.1
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 9.0e-39 165.2 144 67.4
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 3.2e-36 156.8 206 48.1
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.0e-30 137.5 128 82.8
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 2.9e-29 133.7 337 31.5
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 5.7e-25 119.4 163 47.9
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 3.4e-22 110.2 111 82.9
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 2.5e-20 104.0 104 61.5
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.7e-19 99.8 97 61.9
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.5e-17 94.7 224 31.2
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 4.4e-17 93.2 102 48.0
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.4e-15 88.2 50 84.0
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 1.5e-14 84.7 78 59.0
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 1.5e-14 84.7 53 83.0
FvH4_1g08700 Fragaria vesca HOM05D000069 ORTHO05D021424 1.2e-11 75.1 44 88.6
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.4e-07 61.6 57 50.9
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.2e-06 58.5 83 47.0
FAN23G2278 Fragaria x ananassa HOM05D002335 ORTHO05D200751 7.7e-06 55.8 32 90.6


User provided reference genes

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