Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1526 Fragaria x ananassa HOM05D006714 ORTHO05D008103 0.0e+00 1433.7 746 100.0
FAN23G2031 Fragaria x ananassa HOM05D006714 ORTHO05D008103 0.0e+00 1364.7 746 96.1
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 0.0e+00 1245.7 734 90.6
FvH4_1g25400 Fragaria vesca HOM05D006714 ORTHO05D008103 0.0e+00 1108.6 662 89.7
RcHm_v2.0_Chr2g0123431 Rosa chinensis HOM05D006714 ORTHO05D008103 1.5e-311 1072.4 756 75.9
MD15G1138100 Malus domestica HOM05D006714 ORTHO05D008103 4.1e-219 765.4 748 57.6
Prupe.4G281200 Prunus persica HOM05D006714 ORTHO05D008103 2.2e-172 610.1 658 56.4
Cfa007804 Carpinus fangiana HOM05D006714 ORTHO05D008103 3.4e-165 586.3 761 47.6
Haze_14269 Corylus avellana HOM05D006714 ORTHO05D008103 1.9e-163 580.5 817 44.4
Dinv28198 Davidia involucrata HOM05D006714 ORTHO05D008103 1.6e-159 567.4 660 50.5
GSVIVG01030704001 Vitis vinifera HOM05D006714 ORTHO05D008103 6.3e-143 512.3 751 44.9
Manes.02G077300 Manihot esculenta HOM05D006714 ORTHO05D008103 6.9e-142 508.8 739 42.8
TAR629G3521 Trochodendron aralioides HOM05D006714 ORTHO05D008103 1.0e-140 505.0 494 55.9
CiPaw.03G072500 Carya illinoinensis HOM05D006714 ORTHO05D008103 1.7e-140 504.2 414 63.0
QL10p014398 Quercus lobata HOM05D006714 ORTHO05D008103 2.5e-139 500.4 923 39.0
Rhsim08G0018800 Rhododendron simsii HOM05D006714 ORTHO05D008103 9.3e-139 498.4 393 65.4
Medtr5g078170 Medicago truncatula HOM05D006714 ORTHO05D008103 1.2e-138 498.0 630 48.9
QL02p058308 Quercus lobata HOM05D006714 ORTHO05D008103 1.3e-135 488.0 550 53.6
Hma1.2p1_0158F.1_g070140 Hydrangea macrophylla HOM05D006714 ORTHO05D008103 6.3e-135 485.7 393 63.6
TWI77G0889 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 8.2e-135 485.3 630 46.7
Ciclev10011142m.g Citrus clementina HOM05D006714 ORTHO05D008103 1.1e-134 485.0 801 41.7
Gohir.A07G178400 Gossypium hirsutum HOM05D006714 ORTHO05D008103 1.4e-134 484.6 684 45.8
Thecc.04G114100 Theobroma cacao HOM05D006714 ORTHO05D008103 4.1e-134 483.0 772 42.2
LjContig00141g0000721 Lotus japonicus HOM05D006714 ORTHO05D008103 5.0e-132 476.1 528 52.7
arahy.Tifrunner.gnm1.ann1.ZV72ZC Arachis hypogaea HOM05D006714 ORTHO05D008103 6.5e-132 475.7 396 60.6
Cc07_g13380 Coffea canephora HOM05D006714 ORTHO05D008103 6.5e-132 475.7 395 62.3
Duzib211G0559 Durio zibethinus HOM05D006714 ORTHO05D008103 8.5e-132 475.3 697 45.3
Gohir.D07G184700 Gossypium hirsutum HOM05D006714 ORTHO05D008103 8.5e-132 475.3 684 45.5
Potri.017G130400 Populus trichocarpa HOM05D006714 ORTHO05D008103 1.9e-131 474.2 400 58.2
arahy.Tifrunner.gnm1.ann1.E1Z4YV Arachis hypogaea HOM05D006714 ORTHO05D008103 2.5e-131 473.8 396 60.4
Sabra17G0108600 Salix brachista HOM05D006714 ORTHO05D008103 7.2e-131 472.2 738 40.9
Gorai.001G205100 Gossypium raimondii HOM05D006714 ORTHO05D008103 2.1e-130 470.7 684 45.2
Ca_05830_v3 Cicer arietinum L. HOM05D006714 ORTHO05D008103 1.8e-129 467.6 598 46.8
Nn4g24295 Nelumbo nucifera HOM05D006714 ORTHO05D008103 3.9e-129 466.5 644 46.0
VMungo0647G1195 Vigna mungo HOM05D006714 ORTHO05D008103 5.1e-129 466.1 613 47.8
CANSAT78G1609 Cannabis sativa HOM05D006714 ORTHO05D008103 6.7e-129 465.7 666 45.8
vmacro18531 Vaccinium macrocarpon HOM05D006714 ORTHO05D008103 5.7e-128 462.6 465 54.2
SalBow5G2523 Salvia bowleyana HOM05D006714 ORTHO05D008103 3.7e-127 459.9 405 60.0
DCAR_014171 Daucus carota HOM05D006714 ORTHO05D008103 8.2e-127 458.8 564 48.9
Nitab4.5_0000201g0160 Nicotiana tabacum HOM05D006714 ORTHO05D008103 6.9e-126 455.7 680 43.2
TWI74G0031 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 9.1e-126 455.3 408 58.6
Lalb_Chr04g0251401 Lupinus albus HOM05D006714 ORTHO05D008103 2.0e-125 454.1 525 51.8
HanXRQChr15g0483231 Helianthus annuus HOM05D006714 ORTHO05D008103 2.9e-124 450.3 419 60.1
CsaV3_5G024210 Cucumis sativus L. HOM05D006714 ORTHO05D008103 1.0e-121 441.8 634 46.5
Oeu032319.1 Olea europaea HOM05D006714 ORTHO05D008103 1.0e-121 441.8 341 64.5
ECA247G1081 Erigeron canadensis HOM05D006714 ORTHO05D008103 3.0e-121 440.3 553 46.7
TPR.G8266 Trifolium pratense HOM05D006714 ORTHO05D008103 3.3e-120 436.8 644 44.7
Aqoxy1G00382 Aquilegia oxysepala HOM05D006714 ORTHO05D008103 4.4e-120 436.4 423 56.0
Sed0011157 Sechium edule HOM05D006714 ORTHO05D008103 3.7e-119 433.3 393 58.0
Hund13103 Selenicereus undatus HOM05D006714 ORTHO05D008103 7.0e-118 429.1 572 44.9
ClCG01G008770 Citrullus lanatus HOM05D006714 ORTHO05D008103 1.0e-116 425.2 591 46.5
SGA_v2.0_scaffold45G17176 Striga asiatica HOM05D006714 ORTHO05D008103 5.0e-116 422.9 390 57.7
Migut.K00904 Erythranthe guttata HOM05D006714 ORTHO05D008103 6.5e-116 422.5 388 59.0
PSO017G5883 Papaver somniferum HOM05D006714 ORTHO05D008103 1.1e-115 421.8 394 56.3
PGR031G2162 Punica granatum HOM05D006714 ORTHO05D008103 2.5e-115 420.6 417 53.7
Cpa.g.sc116.59 Carica papaya HOM05D006714 ORTHO05D008103 3.2e-115 420.2 423 54.8
EL10Ac2g03178 Beta vulgaris HOM05D006714 ORTHO05D008103 5.5e-115 419.5 668 41.8
CAN.G222.36 Capsicum annuum HOM05D006714 ORTHO05D008103 1.0e-113 415.2 389 56.6
AUR62018218 Chenopodium quinoa HOM05D006714 ORTHO05D008103 1.7e-111 407.9 389 56.8
Dinv19038 Davidia involucrata HOM05D006714 ORTHO05D008103 3.7e-111 406.8 514 49.4
Sopen11g005830 Solanum pennellii HOM05D006714 ORTHO05D008103 3.1e-110 403.7 391 53.7
Solyc11g011060.3 Solanum lycopersicum HOM05D006714 ORTHO05D008103 5.3e-110 402.9 391 53.7
AUR62037796 Chenopodium quinoa HOM05D006714 ORTHO05D008103 2.0e-109 401.0 309 63.1
Nitab4.5_0006893g0050 Nicotiana tabacum HOM05D006714 ORTHO05D008103 2.7e-109 400.6 405 54.3
Lsat_1_v5_gn_3_63641 Lactuca sativa HOM05D006714 ORTHO05D008103 2.2e-108 397.5 390 56.9
THA.LOC104820908 Tarenaya hassleriana HOM05D006714 ORTHO05D008103 4.0e-105 386.7 347 58.2
Aa31LG11G13040 Aethionema arabicum HOM05D006714 ORTHO05D008103 9.5e-99 365.5 375 53.6
HPP92_011112 Vanilla planifolia HOM05D006714 ORTHO05D008103 1.8e-97 361.3 391 51.7
Carub.0006s1481 Capsella rubella HOM05D006714 ORTHO05D008103 6.8e-97 359.4 384 53.1
Thhalv10012945m.g Eutrema salsugineum HOM05D006714 ORTHO05D008103 2.6e-96 357.5 385 52.7
CARHR196610 Cardamine hirsuta HOM05D006714 ORTHO05D008103 1.7e-95 354.8 389 51.9
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 6.3e-95 352.8 353 51.6
HPP92_011097 Vanilla planifolia HOM05D006714 ORTHO05D008103 1.4e-94 351.7 391 51.2
Sp6g27560 Schrenkiella parvula HOM05D006714 ORTHO05D008103 7.0e-94 349.4 342 55.6
SalBow5G2948 Salvia bowleyana HOM05D006714 ORTHO05D008103 1.6e-93 348.2 405 49.4
AT5G16610 Arabidopsis thaliana HOM05D006714 ORTHO05D008103 2.7e-93 347.4 571 40.6
Glyma.14G214400 Glycine max HOM05D006714 ORTHO05D008103 1.0e-92 345.5 465 46.9
AL6G27570 Arabidopsis lyrata HOM05D006714 ORTHO05D008103 5.0e-92 343.2 379 50.7
A10p22600 Brassica napus HOM05D006714 ORTHO05D008103 4.7e-90 336.7 305 58.7
BraA10t44322Z Brassica rapa HOM05D006714 ORTHO05D008103 4.7e-90 336.7 305 58.7
C09p60510 Brassica napus HOM05D006714 ORTHO05D008103 1.8e-89 334.7 305 58.0
BolC9t58884H Brassica oleracea HOM05D006714 ORTHO05D008103 1.8e-89 334.7 305 58.0
Atru.chr1.1942 Acer truncatum HOM05D006714 ORTHO05D008103 1.7e-87 328.2 227 70.5
ATR0171G009 Amborella trichopoda HOM05D006714 ORTHO05D008103 1.4e-86 325.1 373 47.7
BcaB08g36834 Brassica carinata HOM05D006714 ORTHO05D008103 1.6e-85 321.6 309 55.7
Os03g0221300 Oryza sativa ssp. japonica HOM05D006714 ORTHO05D008103 6.6e-84 316.2 314 53.8
CDE07G1834 Ceratophyllum demersum HOM05D006714 ORTHO05D008103 3.3e-83 313.9 354 46.9
Peaxi162Scf00305g00412 Petunia axillaris HOM05D006714 ORTHO05D008103 1.6e-82 311.6 230 67.0
PSO063G0106 Papaver somniferum HOM05D006714 ORTHO05D008103 7.5e-80 302.8 237 62.4
Sc11g0004560 Simmondsia chinensis HOM05D006714 ORTHO05D008103 1.3e-79 302.0 670 35.7
PSO478G0421 Papaver somniferum HOM05D006714 ORTHO05D008103 8.3e-79 299.3 303 54.5
unitig_748.g8636 Utricularia gibba HOM05D006714 ORTHO05D008103 1.0e-76 292.4 257 58.8
Actinidia28805 Actinidia chinensis HOM05D006714 ORTHO05D008103 1.2e-69 268.9 326 48.5
Actinidia35727 Actinidia chinensis HOM05D006714 ORTHO05D008103 4.6e-69 266.9 396 42.9
Psat2g047840 Pisum sativum HOM05D006714 ORTHO05D008103 3.9e-68 263.8 248 55.2
Pp3c23_20330 Physcomitrium patens HOM05D006714 ORTHO05D008103 4.6e-61 240.4 280 44.3
Pp3c24_16350 Physcomitrium patens HOM05D006714 ORTHO05D008103 8.6e-60 236.1 276 46.0
Phvul.008G236600 Phaseolus vulgaris HOM05D006714 ORTHO05D008103 7.3e-59 233.0 436 39.9
SMO340G0205 Selaginella moellendorffii HOM05D006714 ORTHO05D008103 1.7e-52 211.8 191 51.8
QL93p0100_0731 Quercus lobata HOM05D006714 ORTHO05D008103 1.9e-51 208.4 134 74.6
SEGI_28129 Sequoiadendron giganteum HOM05D006714 ORTHO05D008103 1.6e-50 205.3 286 42.7
CSS0036373 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 1.4e-49 202.2 294 45.2
CSS0024067 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 9.0e-49 199.5 290 45.2
CBR_g12792 Chara braunii HOM05D006714 ORTHO05D008103 2.0e-48 198.4 268 38.8
MELO3C022869.2 Cucumis melo HOM05D006714 ORTHO05D008103 4.5e-48 197.2 606 31.5
Eucgr.F02863 Eucalyptus grandis HOM05D006714 ORTHO05D008103 1.3e-47 195.7 138 69.6
QL93p0100_0723 Quercus lobata HOM05D006714 ORTHO05D008103 1.9e-38 165.2 295 43.7
Peaxi162Scf00305g00413 Petunia axillaris HOM05D006714 ORTHO05D008103 8.2e-34 149.8 171 50.3
Eucgr.F02862 Eucalyptus grandis HOM05D006714 ORTHO05D008103 1.5e-11 75.9 109 38.5
Atru.chr1.1941 Acer truncatum HOM05D006714 ORTHO05D008103 4.8e-10 70.9 301 29.6


User provided reference genes

Program Settings