Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1474 Fragaria x ananassa HOM05D001966 ORTHO05D010986 5.6e-95 350.9 174 100.0
Hma1.2p1_0594F.1_g185800 Hydrangea macrophylla HOM05D001966 ORTHO05D010986 2.0e-84 315.8 184 88.6
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 1.4e-56 223.4 212 63.7
SHI27036 Sapria himalayana HOM05D001966 ORTHO05D010986 1.3e-46 190.3 120 79.2
Nitab4.5_0000002g0300 Nicotiana tabacum HOM05D001966 ORTHO05D010055 1.1e-42 177.2 163 62.0
COL.COLO4_03213 Corchorus olitorius HOM05D001966 ORTHO05D010986 7.2e-42 174.5 130 72.3
Cfa023005 Carpinus fangiana HOM05D001966 ORTHO05D010986 4.0e-40 168.7 83 97.6
Aqoxy38s012 Aquilegia oxysepala HOM05D001966 ORTHO05D010986 1.2e-39 167.2 83 96.4
Aqoxy4G02030 Aquilegia oxysepala HOM05D001966 ORTHO05D010986 1.2e-39 167.2 83 96.4
CsaV3_UNG196500 Cucumis sativus L. HOM05D001966 ORTHO05D010986 4.4e-39 165.2 83 96.4
Sed0007694 Sechium edule HOM05D001966 ORTHO05D010986 4.4e-39 165.2 83 96.4
Sed0023467 Sechium edule HOM05D001966 ORTHO05D010986 4.4e-39 165.2 83 96.4
Sed0025793 Sechium edule HOM05D001966 ORTHO05D010986 4.4e-39 165.2 83 96.4
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 7.5e-39 164.5 114 74.6
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 6.3e-38 161.4 113 72.6
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 3.1e-37 159.1 191 53.4
Cpa.g.sc23.86 Carica papaya HOM05D001966 ORTHO05D010986 3.5e-36 155.6 81 92.6
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 4.5e-36 155.2 78 93.6
Nitab4.5_0003101g0110 Nicotiana tabacum HOM05D008354 ORTHO05D010055 1.0e-35 154.1 162 54.9
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 1.5e-34 150.2 173 53.8
Sed0001789 Sechium edule HOM05D001966 ORTHO05D010986 2.5e-34 149.4 77 94.8
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 2.5e-34 149.4 78 89.7
BolSC49t61132H Brassica oleracea HOM05D001966 ORTHO05D010986 1.0e-32 144.1 112 70.5
vmacro22417 Vaccinium macrocarpon HOM05D008354 ORTHO05D010055 1.4e-32 143.7 99 75.8
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.0e-31 139.8 102 73.5
EL10As10g23964 Beta vulgaris HOM05D001966 ORTHO05D010055 8.3e-30 134.4 125 62.4
Nitab4.5_0006502g0020 Nicotiana tabacum HOM05D001966 ORTHO05D010055 1.1e-29 134.0 115 64.3
arahy.Tifrunner.gnm1.ann1.ZMH4QB Arachis hypogaea HOM05D001966 ORTHO05D010986 4.5e-28 128.6 62 96.8
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 1.0e-27 127.5 63 96.8
CARHR282380 Cardamine hirsuta HOM05D001966 ORTHO05D010986 1.0e-27 127.5 63 96.8
CARHR282500 Cardamine hirsuta HOM05D001966 ORTHO05D010986 1.0e-27 127.5 63 96.8
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 1.0e-27 127.5 121 58.7
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 5.0e-27 125.2 62 95.2
arahy.Tifrunner.gnm1.ann1.LY649L Arachis hypogaea HOM05D001966 ORTHO05D010986 1.1e-26 124.0 59 96.6
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 5.7e-23 111.7 54 98.1
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 7.5e-23 111.3 57 94.7
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-21 107.5 52 94.2
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.1e-21 107.5 52 94.2
BolSC29t60538H Brassica oleracea HOM05D008016 ORTHO05D010986 1.4e-21 107.1 83 68.7
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 1.4e-21 107.1 54 94.4
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 1.4e-21 107.1 54 94.4
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 1.4e-21 107.1 54 94.4
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 1.4e-21 107.1 54 94.4
Lsat_1_v5_gn_4_68181 Lactuca sativa HOM05D008016 ORTHO05D010055 2.4e-21 106.3 137 48.9
Nitab4.5_0004137g0030 Nicotiana tabacum HOM05D008354 ORTHO05D010055 7.0e-21 104.8 106 60.4
SHI26755 Sapria himalayana HOM05D001966 ORTHO05D010986 7.0e-21 104.8 70 75.7
CSS0015594 Camellia sinensis var. sinensis HOM05D001966 ORTHO05D010986 2.7e-20 102.8 63 81.0
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 2.7e-20 102.8 53 92.5
Peaxi162Scf00080g00519 Petunia axillaris HOM05D001966 ORTHO05D010055 3.5e-20 102.4 85 65.9
ClCG09G021430 Citrullus lanatus HOM05D001966 ORTHO05D010986 4.5e-20 102.1 57 89.5
Peaxi162Scf00994g00002 Petunia axillaris HOM05D001966 ORTHO05D010986 5.9e-20 101.7 52 92.3
CAN.G386.21 Capsicum annuum HOM05D001966 ORTHO05D010055 1.0e-19 100.9 94 62.8
Nitab4.5_0004841g0090 Nicotiana tabacum HOM05D008354 ORTHO05D010055 2.9e-19 99.4 82 67.1
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 2.9e-19 99.4 58 86.2
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 2.9e-19 99.4 58 86.2
Peaxi162Scf01600g00007 Petunia axillaris HOM05D001966 ORTHO05D010986 1.1e-18 97.4 52 88.5
Nitab4.5_0001727g0120 Nicotiana tabacum HOM05D008016 ORTHO05D010055 1.9e-18 96.7 129 51.2
Nitab4.5_0004137g0080 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.9e-18 96.7 71 70.4
Nitab4.5_0012234g0020 Nicotiana tabacum HOM05D008016 ORTHO05D010055 5.6e-18 95.1 124 50.0
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 1.4e-16 90.5 52 86.5
Nitab4.5_0001761g0140 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.4e-16 90.5 52 84.6
SHI36395 Sapria himalayana HOM05D001966 ORTHO05D010986 1.4e-16 90.5 47 89.4
Nitab4.5_0001986g0110 Nicotiana tabacum HOM05D001966 ORTHO05D010986 4.0e-16 89.0 51 84.3
Psat5g119000 Pisum sativum HOM05D009726 ORTHO05D010588 4.0e-16 89.0 101 54.5
DCAR_001145 Daucus carota HOM05D001966 ORTHO05D010055 8.9e-16 87.8 44 93.2
Nitab4.5_0001761g0150 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.5e-15 87.0 60 70.0
Oeu041412.1 Olea europaea HOM05D001966 ORTHO05D010986 1.5e-15 87.0 52 80.8
arahy.Tifrunner.gnm1.ann1.DY3820 Arachis hypogaea HOM05D000445 ORTHO05D010986 2.0e-15 86.7 41 95.1
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 2.0e-15 86.7 41 95.1
arahy.Tifrunner.gnm1.ann1.X4EL03 Arachis hypogaea HOM05D001966 ORTHO05D010986 1.3e-14 84.0 47 85.1
Solyc11g021160.1 Solanum lycopersicum HOM05D001966 ORTHO05D010055 4.9e-14 82.0 45 86.7
CAN.G1298.21 Capsicum annuum HOM05D000445 ORTHO05D000314 1.4e-13 80.5 51 76.5
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 3.2e-13 79.3 40 90.0
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 4.1e-13 79.0 44 84.1
arahy.Tifrunner.gnm1.ann1.9FU6Q4 Arachis hypogaea HOM05D009726 ORTHO05D010588 1.2e-12 77.4 60 68.3
Nitab4.5_0006502g0080 Nicotiana tabacum HOM05D001966 ORTHO05D010986 2.0e-12 76.6 60 70.0
Lsat_1_v5_gn_2_20541 Lactuca sativa HOM05D008354 ORTHO05D010055 2.7e-12 76.3 39 97.4
Lsat_1_v5_gn_3_108780 Lactuca sativa HOM05D008354 ORTHO05D010055 2.7e-12 76.3 39 97.4
Lsat_1_v5_gn_3_110420 Lactuca sativa HOM05D008354 ORTHO05D010055 2.7e-12 76.3 39 97.4
Lsat_1_v5_gn_4_147820 Lactuca sativa HOM05D008354 ORTHO05D010055 2.7e-12 76.3 39 97.4
Lsat_1_v5_gn_5_181860 Lactuca sativa HOM05D008354 ORTHO05D010055 2.7e-12 76.3 39 97.4
HPP92_028386 Vanilla planifolia HOM05D009726 ORTHO05D010055 3.5e-12 75.9 38 92.1
arahy.Tifrunner.gnm1.ann1.CK4XFX Arachis hypogaea HOM05D009726 ORTHO05D010055 1.0e-11 74.3 59 67.8
Migut.D01398 Erythranthe guttata HOM05D008354 ORTHO05D010055 1.3e-11 73.9 39 94.9
Nitab4.5_0002404g0010 Nicotiana tabacum HOM05D008354 ORTHO05D010055 1.3e-11 73.9 39 94.9
PGSC0003DMG400029000 Solanum tuberosum HOM05D008354 ORTHO05D010055 1.3e-11 73.9 39 94.9
PGSC0003DMG401008784 Solanum tuberosum HOM05D008354 ORTHO05D010055 1.3e-11 73.9 39 94.9
Aqoxy38s013 Aquilegia oxysepala HOM05D008354 ORTHO05D010055 1.7e-11 73.6 39 94.9
arahy.Tifrunner.gnm1.ann1.FTZ997 Arachis hypogaea HOM05D000445 ORTHO05D000314 3.0e-11 72.8 39 89.7
Potri.013G092500 Populus trichocarpa HOM05D008354 ORTHO05D010055 5.0e-11 72.0 39 89.7
Sc02g0004570 Simmondsia chinensis HOM05D008037 ORTHO05D004271 5.0e-11 72.0 59 64.4
Nitab4.5_0012234g0090 Nicotiana tabacum HOM05D001966 ORTHO05D010986 6.6e-11 71.6 45 80.0
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 8.6e-11 71.2 36 94.4
arahy.Tifrunner.gnm1.ann1.CV8HTS Arachis hypogaea HOM05D008354 ORTHO05D010055 1.1e-10 70.9 55 67.3
arahy.Tifrunner.gnm1.ann1.MCF6CI Arachis hypogaea HOM05D001966 ORTHO05D010986 1.1e-10 70.9 35 91.4
Oeu040832.1 Olea europaea HOM05D008354 ORTHO05D010055 1.9e-10 70.1 36 94.4
DCAR_024575 Daucus carota HOM05D008354 ORTHO05D010055 2.5e-10 69.7 36 94.4
DCAR_031655 Daucus carota HOM05D008354 ORTHO05D010055 2.5e-10 69.7 36 94.4
Psat7g093280 Pisum sativum HOM05D001966 ORTHO05D010986 3.3e-10 69.3 53 67.9
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 3.3e-10 69.3 34 94.1
arahy.Tifrunner.gnm1.ann1.7D98FQ Arachis hypogaea HOM05D000963 ORTHO05D004715 5.6e-10 68.6 38 84.2
arahy.Tifrunner.gnm1.ann1.U095GY Arachis hypogaea HOM05D000963 ORTHO05D004715 5.6e-10 68.6 38 84.2
Nitab4.5_0009355g0010 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.6e-09 67.0 36 88.9
arahy.Tifrunner.gnm1.ann1.WK7HZX Arachis hypogaea HOM05D009726 ORTHO05D010588 2.8e-09 66.2 60 61.7
EL10Ac6g14593 Beta vulgaris HOM05D001966 ORTHO05D010055 3.6e-09 65.9 39 79.5
ClCG11G009640 Citrullus lanatus HOM05D008354 ORTHO05D010055 3.6e-09 65.9 35 94.3
MELO3C028020.2 Cucumis melo HOM05D008354 ORTHO05D010055 3.6e-09 65.9 35 94.3
Nitab4.5_0007400g0150 Nicotiana tabacum HOM05D001966 ORTHO05D010986 3.6e-09 65.9 59 61.0
Oeu022559.1 Olea europaea HOM05D001966 ORTHO05D011119 3.6e-09 65.9 39 84.6
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 4.7e-09 65.5 32 93.8
CAN.G947.16 Capsicum annuum HOM05D001697 ORTHO05D001905 6.2e-09 65.1 36 91.7
Glyma.14G158500 Glycine max HOM05D008354 ORTHO05D010055 6.2e-09 65.1 39 82.1
CAN.G1185.5 Capsicum annuum HOM05D001070 ORTHO05D010055 8.0e-09 64.7 44 72.7
arahy.Tifrunner.gnm1.ann1.V91BB6 Arachis hypogaea HOM05D008354 ORTHO05D010055 1.1e-08 64.3 37 86.5
vmacro12501 Vaccinium macrocarpon HOM05D001824 ORTHO05D010055 1.1e-08 64.3 35 88.6
Lalb_Chr08g0236231 Lupinus albus HOM05D001966 ORTHO05D010986 2.3e-08 63.2 32 90.6
Lalb_Chr24g0400891 Lupinus albus HOM05D001966 ORTHO05D010986 2.3e-08 63.2 32 90.6
Actinidia30703 Actinidia chinensis HOM05D001966 ORTHO05D009823 3.1e-08 62.8 72 56.9
CAN.G82.6 Capsicum annuum HOM05D000011 ORTHO05D000018 3.1e-08 62.8 37 83.8
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 4.0e-08 62.4 37 81.1
MELO3C000043.2 Cucumis melo HOM05D008354 ORTHO05D010055 5.2e-08 62.0 35 91.4
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 6.8e-08 61.6 58 58.6
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 8.9e-08 61.2 33 84.8
LjContig00315g0013064 Lotus japonicus HOM05D008354 ORTHO05D010055 1.2e-07 60.8 29 100.0
LjContig00439g0006222 Lotus japonicus HOM05D008354 ORTHO05D010055 1.2e-07 60.8 29 100.0
LjContig00446g0002728 Lotus japonicus HOM05D008354 ORTHO05D010055 1.2e-07 60.8 29 100.0
LjContig00489g0002748 Lotus japonicus HOM05D008354 ORTHO05D010055 1.2e-07 60.8 29 100.0
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 1.2e-07 60.8 33 90.9
Thhalv10029308m.g Eutrema salsugineum HOM05D008354 ORTHO05D010055 3.4e-07 59.3 39 82.1
arahy.Tifrunner.gnm1.ann1.R58SNE Arachis hypogaea HOM05D008016 ORTHO05D010055 4.4e-07 58.9 49 63.3
Nitab4.5_0005831g0120 Nicotiana tabacum HOM05D008354 ORTHO05D010055 4.4e-07 58.9 34 85.3
arahy.Tifrunner.gnm1.ann1.E3ANQS Arachis hypogaea HOM05D009726 ORTHO05D010588 1.7e-06 57.0 63 50.8
arahy.Tifrunner.gnm1.ann1.431F73 Arachis hypogaea HOM05D009726 ORTHO05D010588 2.9e-06 56.2 69 52.2
Peaxi162Scf00055g00164 Petunia axillaris HOM05D001966 ORTHO05D010986 2.9e-06 56.2 28 92.9
arahy.Tifrunner.gnm1.ann1.3QB7SN Arachis hypogaea HOM05D001966 ORTHO05D007227 4.9e-06 55.5 32 78.1
arahy.Tifrunner.gnm1.ann1.V4KXIX Arachis hypogaea HOM05D009726 ORTHO05D010588 4.9e-06 55.5 37 70.3
Phvul.011G173700 Phaseolus vulgaris HOM05D008354 ORTHO05D010055 4.9e-06 55.5 37 73.0
arahy.Tifrunner.gnm1.ann1.1DIJ3A Arachis hypogaea HOM05D009726 ORTHO05D010588 6.4e-06 55.1 69 52.2
arahy.Tifrunner.gnm1.ann1.JWI1UU Arachis hypogaea HOM05D009726 ORTHO05D010588 6.4e-06 55.1 36 69.4
arahy.Tifrunner.gnm1.ann1.VG0AML Arachis hypogaea HOM05D009726 ORTHO05D010588 8.3e-06 54.7 57 50.9
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 8.3e-06 54.7 26 92.3


User provided reference genes

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