Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 0.0e+00 1255.0 616 100.0
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 0.0e+00 1245.7 616 99.2
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 0.0e+00 1245.3 616 99.2
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 0.0e+00 1223.4 616 97.7
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 0.0e+00 1173.7 616 94.6
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 0.0e+00 1099.3 620 88.7
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.3e-295 1019.2 621 81.6
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.6e-293 1012.3 618 80.4
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 7.1e-286 986.9 616 78.4
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.5e-283 978.4 622 77.0
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.4e-281 972.6 618 77.5
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 5.9e-280 967.2 620 75.8
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 7.7e-280 966.8 593 78.8
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 3.8e-279 964.5 619 76.6
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.2e-278 961.4 593 78.4
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 9.4e-278 959.9 616 76.6
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 9.4e-278 959.9 593 78.2
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 1.6e-277 959.1 592 79.2
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 2.5e-275 951.8 616 74.8
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 3.3e-275 951.4 594 77.4
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 9.7e-275 949.9 593 76.7
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 4.1e-273 944.5 616 75.8
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 5.3e-273 944.1 598 76.1
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 5.3e-273 944.1 593 77.7
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 6.9e-273 943.7 598 76.9
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 1.5e-272 942.6 594 76.8
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 3.4e-272 941.4 601 75.4
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.1e-270 936.4 592 77.0
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.4e-270 936.0 593 76.6
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.4e-270 936.0 593 76.6
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 4.2e-270 934.5 595 76.1
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 4.2e-270 934.5 593 77.2
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 5.5e-270 934.1 593 75.7
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.5e-270 934.1 593 76.6
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 9.4e-270 933.3 598 75.4
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.1e-269 932.2 592 75.2
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 7.9e-269 930.2 598 75.8
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.4e-268 929.5 620 74.0
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.3e-268 928.7 619 74.2
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 3.0e-268 928.3 600 74.0
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 8.8e-268 926.8 592 74.7
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 8.8e-268 926.8 619 72.7
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 1.5e-267 926.0 619 72.9
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 1.5e-267 926.0 593 74.9
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.6e-267 925.2 619 72.4
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 1.7e-266 922.5 616 72.4
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 2.2e-266 922.2 619 72.1
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.7e-266 921.4 603 74.1
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 3.7e-266 921.4 603 75.0
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 2.4e-265 918.7 588 75.0
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.4e-265 918.7 628 71.5
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 3.1e-265 918.3 619 74.2
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 4.1e-265 917.9 595 74.6
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 7.0e-265 917.1 618 72.8
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 7.0e-265 917.1 617 73.7
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 9.1e-265 916.8 619 72.9
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 9.1e-265 916.8 622 71.9
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 2.0e-264 915.6 619 73.7
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.5e-264 914.4 620 73.5
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 4.5e-264 914.4 606 75.1
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 7.7e-264 913.7 595 75.5
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.3e-263 912.9 619 74.5
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.1e-262 909.8 619 73.7
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 1.9e-262 909.1 623 73.0
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 1.9e-262 909.1 620 73.7
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.9e-262 909.1 616 73.1
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.5e-262 908.7 621 74.1
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 3.2e-262 908.3 620 72.6
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 3.2e-262 908.3 590 75.9
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 4.2e-262 907.9 622 73.5
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 5.5e-262 907.5 622 73.3
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 5.5e-262 907.5 592 74.2
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 7.2e-262 907.1 618 72.8
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 9.4e-262 906.7 600 73.7
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 2.1e-261 905.6 623 73.0
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 2.7e-261 905.2 596 73.7
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 2.7e-261 905.2 624 73.1
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 8.0e-261 903.7 592 75.8
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.0e-260 903.3 619 73.2
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.0e-260 903.3 623 73.0
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 1.4e-260 902.9 617 71.8
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 4.0e-260 901.4 594 73.2
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 8.8e-260 900.2 623 72.6
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.1e-259 899.8 592 74.5
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.1e-259 899.8 592 73.8
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.1e-259 899.8 721 64.5
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 2.0e-259 899.0 610 71.3
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 3.3e-259 898.3 615 72.4
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 4.4e-259 897.9 568 75.7
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.7e-258 896.0 615 72.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.4e-257 892.9 622 71.5
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 3.1e-257 891.7 622 71.9
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 3.1e-257 891.7 624 72.3
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.1e-257 891.3 621 70.9
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 5.3e-257 891.0 616 72.7
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 2.6e-256 888.6 623 70.9
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 4.5e-256 887.9 612 71.4
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 2.2e-255 885.6 623 71.4
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 3.8e-255 884.8 621 70.4
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 3.8e-255 884.8 619 70.9
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 5.0e-255 884.4 614 72.6
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.1e-254 883.2 623 71.1
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 4.2e-254 881.3 616 71.4
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 5.5e-254 880.9 561 76.3
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 2.3e-252 875.5 625 69.9
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 3.0e-252 875.2 622 69.8
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 4.0e-252 874.8 626 69.8
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 6.8e-252 874.0 624 70.4
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.2e-251 873.2 632 69.5
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 1.3e-250 869.8 544 77.9
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.7e-250 869.4 625 69.6
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 2.8e-250 868.6 630 70.8
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 8.3e-250 867.1 623 69.3
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 2.4e-249 865.5 625 69.0
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 3.1e-249 865.1 624 69.2
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 1.2e-248 863.2 624 69.1
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 8.5e-247 857.1 620 70.6
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.6e-245 852.8 623 70.8
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.5e-243 846.3 545 76.0
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 3.7e-242 841.6 621 68.6
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 6.8e-236 820.8 516 77.5
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 4.9e-234 814.7 947 49.5
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.9e-230 802.7 914 50.2
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 9.5e-230 800.4 597 65.7
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 4.7e-229 798.1 587 66.4
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 6.0e-208 728.0 549 67.8
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.6e-205 719.9 620 59.0
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 1.5e-203 713.4 593 61.2
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 7.6e-203 711.1 409 82.4
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.9e-203 710.7 592 60.5
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 6.6e-191 671.4 561 56.5
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 6.2e-189 664.8 471 69.0
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 4.6e-176 622.1 348 87.6
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.3e-167 593.2 459 68.0
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 2.0e-155 553.5 404 69.3
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 1.1e-150 537.7 599 46.1
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.8e-146 522.7 315 81.0
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.7e-134 482.3 470 60.0
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.1e-116 422.9 351 57.5
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 1.1e-100 371.7 376 47.9
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 5.6e-97 359.4 414 45.7
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.3e-90 338.2 540 34.4
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 2.3e-90 337.4 188 87.2
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 7.1e-84 315.8 254 63.4
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 3.3e-81 307.0 250 60.4
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.4e-78 297.0 226 66.4
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 9.3e-76 288.9 602 32.9
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.3e-66 258.5 254 53.1
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.3e-66 258.5 254 53.1
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.6e-64 251.5 373 34.9
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.2e-60 237.3 161 70.8
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 4.2e-60 236.9 160 69.4
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 5.1e-50 203.4 242 50.4
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 6.7e-42 176.4 117 76.1
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 6.3e-32 143.3 153 52.3
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 6.3e-32 143.3 153 52.3
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 9.1e-31 139.4 72 90.3
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.9e-28 131.7 135 48.1
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.4e-15 88.2 112 48.2
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 7.7e-14 83.2 49 67.3
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 7.7e-14 83.2 49 67.3
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 7.7e-14 83.2 41 90.2
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 7.2e-12 76.6 43 74.4
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 4.0e-10 70.9 48 58.3
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 4.5e-06 57.4 74 51.4


User provided reference genes

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