Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 2094.7 1120 100.0
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1996.9 1120 96.3
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1947.2 1120 94.6
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1928.3 1123 93.8
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1911.3 1123 93.3
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1805.8 1126 88.2
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1740.7 1132 83.7
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1650.6 1132 79.7
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1619.0 1086 78.8
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1592.8 1132 76.9
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1558.5 1124 76.2
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1557.3 1116 75.0
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1552.3 1137 72.4
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1552.3 1116 75.6
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1551.6 1135 72.6
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1549.6 1143 75.0
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1545.4 1116 74.7
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1543.9 1082 77.9
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1538.9 1132 74.5
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1536.2 1134 74.1
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1535.8 1134 74.6
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1535.0 1096 74.8
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1533.9 1130 75.1
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1531.5 1115 75.4
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1530.4 1133 73.2
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1530.0 1133 74.8
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1529.6 1081 75.0
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1529.2 1118 73.3
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1528.5 1131 73.8
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1524.2 1127 74.7
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1518.4 1136 73.9
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1515.4 1160 72.2
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1513.4 1153 72.2
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1512.7 1134 70.9
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1511.5 1136 73.9
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1511.5 1029 78.3
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1510.0 1141 74.1
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1506.5 1136 72.4
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1506.5 1136 72.4
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1501.1 1154 69.7
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1496.9 1135 73.5
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1496.5 1134 69.5
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1486.1 1112 71.6
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1485.3 1117 73.1
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1477.2 1218 68.8
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1472.6 1160 70.9
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1464.9 1151 69.2
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1463.0 1107 72.1
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1456.4 1095 71.8
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1444.9 1127 69.3
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1441.0 1132 67.9
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1441.0 1012 72.4
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1439.9 909 79.1
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1439.9 909 79.2
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1439.9 907 79.7
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1438.7 1124 69.1
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1438.3 909 79.1
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1428.7 1134 68.3
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1424.8 1130 68.5
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1424.8 1010 71.6
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1417.9 978 73.6
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1417.5 1137 69.0
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1412.1 1124 69.0
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1411.7 978 72.6
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1409.4 978 71.9
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1407.5 1142 68.0
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1400.2 1072 69.2
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1397.1 1138 68.3
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1389.0 1011 70.5
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1388.2 979 71.8
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1388.2 979 71.8
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1387.1 979 71.7
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1387.1 979 71.7
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1375.5 1125 65.5
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1375.5 1114 68.1
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1372.5 1113 68.3
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1369.0 1122 67.0
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1368.2 1127 66.4
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1356.3 969 71.1
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1356.3 909 75.7
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1353.6 1188 64.9
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1346.6 1041 67.2
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1338.6 1151 64.9
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1335.9 969 69.5
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1319.7 1185 63.0
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1316.6 1130 62.9
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1315.8 1143 65.3
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1309.7 1136 67.0
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1297.0 1113 63.0
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1294.6 1243 59.1
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1294.3 1108 63.4
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1290.0 1058 66.6
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1287.7 936 69.8
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1279.2 1083 63.1
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1264.6 1288 55.9
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1257.3 1124 64.1
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1242.3 965 66.8
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1184.1 1096 58.0
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1176.0 920 63.2
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1159.4 968 61.4
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1105.9 977 59.1
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1085.5 732 74.5
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1085.1 730 74.5
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 1.2e-302 1043.5 1121 54.8
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 2.2e-272 943.0 672 71.6
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 3.4e-270 935.6 727 67.0
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.8e-266 923.3 784 58.9
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.4e-258 897.1 584 76.2
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 3.8e-253 879.0 660 68.6
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.6e-182 642.9 589 56.5
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.6e-169 600.5 519 68.4
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 1.5e-156 558.1 396 69.7
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 7.9e-150 535.8 318 83.0
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 4.1e-122 443.7 372 57.8
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.5e-116 422.9 490 50.6
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 4.3e-111 407.1 274 74.5
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 9.5e-111 406.0 425 63.3
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 9.2e-90 336.3 273 64.1
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.7e-89 334.7 321 57.6
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.2e-86 325.9 270 62.6
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 2.1e-86 325.1 213 77.0
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 6.2e-86 323.6 1068 26.6
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 8.1e-86 323.2 316 56.3
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 7.1e-74 283.5 1075 25.1
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-65 255.8 157 79.0
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 2.0e-60 238.8 187 63.1
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 9.9e-60 236.5 386 38.3
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.5e-52 211.1 145 69.0
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 1.0e-48 199.9 243 51.9
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 2.6e-44 185.3 99 85.9
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.3e-43 183.0 107 86.0
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 3.2e-42 178.3 224 43.3
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 3.2e-42 178.3 212 46.7
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 2.3e-40 172.2 103 74.8
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.7e-39 167.5 108 72.2
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.7e-38 164.9 149 57.7
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 6.3e-38 164.1 104 76.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 3.6e-33 148.3 170 53.5
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 2.3e-32 145.6 170 52.9
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 3.3e-31 141.7 228 40.4
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.4e-31 140.6 238 35.7
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.1e-29 136.7 93 76.3
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.4e-29 136.3 159 47.8
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 4.1e-29 134.8 277 35.4
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.0e-27 130.2 106 68.9
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.8e-22 111.3 108 57.4
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.8e-22 111.3 108 57.4
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.8e-22 111.3 108 57.4
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.6e-20 106.3 97 66.0
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.5e-20 104.8 126 50.8
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 8.5e-19 100.5 79 63.3
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.1e-18 100.1 67 70.1
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.1e-18 100.1 295 35.3
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.2e-18 98.6 134 44.8
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.2e-18 98.2 75 64.0
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-17 96.7 59 78.0
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.0e-16 93.6 61 75.4
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.3e-16 92.4 79 57.0
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 8.8e-16 90.5 47 97.9
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 2.6e-15 89.0 51 80.4
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-13 83.6 60 61.7
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.4e-13 82.4 187 37.4
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 3.8e-11 75.1 63 57.1
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.8e-11 75.1 65 56.9
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 1.6e-09 69.7 66 54.5
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 1.3e-06 60.1 60 53.3
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 2.8e-06 58.9 60 53.3
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.8e-06 58.2 146 32.9
SEGI_25641 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.3e-06 57.4 38 65.8


User provided reference genes

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