Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.7e-163 579.3 306 100.0
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.7e-163 579.3 306 100.0
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 1.6e-161 572.8 306 96.7
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.6e-161 571.6 306 98.7
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.0e-160 570.1 306 98.4
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.8e-160 567.0 306 97.7
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 3.5e-132 475.3 308 85.1
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 9.2e-125 450.7 307 77.9
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 5.2e-120 434.9 306 77.8
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 7.0e-117 424.5 306 75.2
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.6e-116 421.8 306 74.5
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 6.0e-116 421.4 297 75.8
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.6e-113 413.3 293 75.1
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 1.8e-112 409.8 306 69.3
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-111 407.1 308 71.8
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 2.6e-111 406.0 292 69.9
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 3.7e-110 402.1 300 73.0
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 1.4e-109 400.2 305 71.8
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.9e-109 399.8 306 71.2
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 5.4e-109 398.3 306 69.3
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 9.2e-109 397.5 306 69.0
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.5e-108 395.6 306 67.6
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 6.0e-108 394.8 293 74.4
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 1.0e-107 394.0 290 71.4
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.3e-107 393.7 307 69.1
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.7e-107 393.3 304 70.1
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 3.0e-107 392.5 289 71.6
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 5.1e-107 391.7 299 67.6
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.9e-106 389.8 306 70.9
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 5.6e-106 388.3 308 67.2
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.2e-105 387.1 306 67.3
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 4.7e-105 385.2 307 65.1
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 6.2e-105 384.8 306 67.6
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 5.2e-104 381.7 296 66.6
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 8.9e-104 380.9 296 69.3
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.5e-103 380.2 307 67.8
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 2.6e-103 379.4 298 69.5
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 5.8e-103 378.3 297 69.4
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 2.2e-102 376.3 296 68.6
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.2e-102 376.3 296 68.6
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 2.9e-102 375.9 297 69.0
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 6.4e-102 374.8 303 66.7
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 8.3e-102 374.4 298 69.1
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 8.3e-102 374.4 298 69.1
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.4e-101 373.6 295 68.1
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.4e-101 373.6 295 68.1
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 2.4e-101 372.9 296 67.6
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 3.2e-101 372.5 296 67.6
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 3.2e-101 372.5 295 68.5
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 3.2e-101 372.5 308 62.7
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 5.4e-101 371.7 306 64.1
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 7.8e-100 367.9 306 62.7
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.3e-99 367.1 307 64.8
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 2.3e-99 366.3 302 64.2
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.5e-98 363.6 290 68.6
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 2.5e-98 362.8 308 64.6
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 3.6e-97 359.0 306 63.4
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 8.1e-97 357.8 297 66.7
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 8.1e-97 357.8 299 65.9
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 1.1e-96 357.5 306 65.7
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.4e-96 357.1 306 60.1
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 3.1e-96 355.9 301 67.1
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.2e-95 354.0 292 64.0
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 1.2e-95 354.0 285 64.6
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 2.0e-95 353.2 295 64.4
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 5.8e-95 351.7 296 64.2
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 5.8e-95 351.7 299 61.9
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 1.3e-94 350.5 295 63.7
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 3.8e-94 349.0 313 60.1
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 1.1e-93 347.4 298 65.4
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.4e-93 347.1 306 62.7
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 1.9e-93 346.7 256 69.9
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 4.2e-93 345.5 298 63.8
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 9.2e-93 344.4 301 65.8
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-92 344.0 297 66.7
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.5e-92 342.4 309 62.1
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 4.6e-92 342.0 308 59.1
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 6.0e-92 341.7 232 78.0
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.0e-91 340.9 317 58.7
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.0e-91 340.9 298 60.7
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.3e-91 340.5 297 64.6
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 1.3e-91 340.5 247 72.5
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.3e-91 339.7 301 62.5
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.3e-91 339.7 301 62.5
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 3.9e-91 339.0 303 61.7
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 1.1e-90 337.4 314 61.1
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 1.9e-90 336.7 314 61.1
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 9.6e-90 334.3 310 59.7
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 3.6e-89 332.4 310 59.7
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 4.7e-89 332.0 310 59.4
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 4.7e-89 332.0 306 59.2
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 6.2e-89 331.6 293 62.1
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.1e-88 330.9 303 58.4
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 1.8e-88 330.1 314 58.6
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.5e-87 327.0 294 59.2
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 3.4e-87 325.9 298 60.1
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 9.9e-87 324.3 294 62.9
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 4.9e-86 322.0 308 58.4
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 6.4e-86 321.6 309 59.9
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.4e-85 320.5 298 59.7
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 7.1e-85 318.2 296 59.1
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 7.8e-84 314.7 357 53.2
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.0e-83 312.8 263 63.9
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 3.0e-83 312.8 280 60.4
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 3.9e-83 312.4 310 59.0
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 6.6e-83 311.6 312 58.3
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 2.5e-82 309.7 299 58.5
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 4.8e-81 305.4 317 54.3
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 8.1e-81 304.7 267 63.7
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.4e-80 303.9 309 57.9
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 2.4e-80 303.1 229 72.9
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 2.6e-79 299.7 306 56.5
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 4.5e-79 298.9 307 51.8
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 5.8e-79 298.5 307 51.5
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 5.8e-79 298.5 310 54.8
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 9.9e-79 297.7 300 53.0
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.6e-76 288.9 241 62.7
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 3.3e-74 282.7 307 52.8
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 4.5e-71 272.3 284 55.3
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.5e-63 247.3 298 47.7
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 2.7e-60 236.5 297 50.5
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 4.6e-60 235.7 289 47.1
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 4.8e-57 225.7 233 53.6
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 4.1e-56 222.6 179 64.8
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.6e-55 219.9 213 54.5
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 2.5e-50 203.4 315 40.3
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 6.5e-46 188.7 202 53.5
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.5e-42 177.6 263 40.7
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.5e-37 161.0 282 41.1
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 8.0e-36 155.2 100 76.0
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 8.2e-33 145.2 131 60.3
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.6e-31 140.2 134 61.9
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.6e-31 140.2 134 61.9
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 2.8e-25 120.2 219 31.1
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-24 118.2 64 90.6
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 2.4e-24 117.1 204 32.8
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 4.1e-24 116.3 62 91.9
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-22 111.3 68 73.5
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.9e-22 110.2 66 74.2
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 9.4e-21 105.1 232 31.5
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-15 88.2 52 78.8
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 2.7e-15 87.0 94 58.5
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 5.0e-14 82.8 50 76.0
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.1e-12 77.4 57 63.2
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 3.6e-12 76.6 119 43.7
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 3.6e-12 76.6 119 49.6
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.3e-11 73.9 45 66.7
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 5.2e-11 72.8 45 68.9
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 3.4e-10 70.1 130 47.7
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 4.9e-09 66.2 39 76.9
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 6.3e-09 65.9 43 67.4


User provided reference genes

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