Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1311 Fragaria x ananassa HOM05D000147 ORTHO05D005950 6.4e-61 237.3 123 100.0
FvH4_6g05890 Fragaria vesca HOM05D000147 ORTHO05D005950 2.6e-54 215.3 133 85.7
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 9.9e-54 213.4 133 85.0
FAN05G0232 Fragaria x ananassa HOM05D000147 ORTHO05D005950 6.4e-53 210.7 133 84.2
FAN05G2764 Fragaria x ananassa HOM05D000070 ORTHO05D005950 6.4e-53 210.7 133 84.2
FAN09G4350 Fragaria x ananassa HOM05D000001 ORTHO05D005950 1.4e-52 209.5 133 83.5
RcHm_v2.0_Chr5g0002011 Rosa chinensis HOM05D000147 ORTHO05D005950 7.6e-46 187.2 138 73.9
FvH4_3g01380 Fragaria vesca HOM05D000147 ORTHO05D005950 1.3e-40 169.9 140 65.0
Prupe.4G015000 Prunus persica HOM05D000147 ORTHO05D005950 6.0e-35 151.0 134 60.4
MD10G1327000 Malus domestica HOM05D000147 ORTHO05D005950 9.0e-31 137.1 135 57.8
Prupe.4G014800 Prunus persica HOM05D000147 ORTHO05D005950 7.1e-28 127.5 106 64.2
Cfa000159 Carpinus fangiana HOM05D000147 ORTHO05D005950 2.2e-24 115.9 133 49.6
Haze_06859 Corylus avellana HOM05D000147 ORTHO05D005950 2.2e-24 115.9 133 49.6
arahy.Tifrunner.gnm1.ann1.0743V5 Arachis hypogaea HOM05D000147 ORTHO05D005950 2.8e-24 115.5 133 49.6
arahy.Tifrunner.gnm1.ann1.D0808P Arachis hypogaea HOM05D000147 ORTHO05D005950 4.8e-24 114.8 133 48.9
ClCG01G021650 Citrullus lanatus HOM05D000070 ORTHO05D005950 4.8e-24 114.8 133 50.4
QL05p071825 Quercus lobata HOM05D000147 ORTHO05D005950 4.8e-24 114.8 133 50.4
VMungo0540G1662 Vigna mungo HOM05D000147 ORTHO05D005950 4.8e-24 114.8 133 47.4
CsaV3_6G048710 Cucumis sativus L. HOM05D000070 ORTHO05D005950 6.3e-24 114.4 133 49.6
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 6.3e-24 114.4 132 49.2
CiPaw.10G074700 Carya illinoinensis HOM05D000147 ORTHO05D005950 2.4e-23 112.5 133 50.4
Psat1g178560 Pisum sativum HOM05D000147 ORTHO05D005950 2.4e-23 112.5 132 48.5
MELO3C007419.2 Cucumis melo HOM05D000147 ORTHO05D005950 5.3e-23 111.3 133 48.1
PGR042G1740 Punica granatum HOM05D000147 ORTHO05D005950 6.9e-23 110.9 133 51.9
Actinidia26885 Actinidia chinensis HOM05D000147 ORTHO05D005950 9.0e-23 110.5 132 47.7
Glyma.15G112100 Glycine max HOM05D000147 ORTHO05D005950 2.6e-22 109.0 133 47.4
Medtr2g024440 Medicago truncatula HOM05D000147 ORTHO05D005950 2.6e-22 109.0 132 47.0
Sed0005764 Sechium edule HOM05D000147 ORTHO05D005950 3.4e-22 108.6 133 45.9
TPR.G13001 Trifolium pratense HOM05D000147 ORTHO05D005950 4.5e-22 108.2 133 47.4
Ca_00695_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005950 5.9e-22 107.8 132 46.2
Atru.chr10.2285 Acer truncatum HOM05D000147 ORTHO05D005950 7.6e-22 107.5 133 48.9
CSS0044927 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005950 7.6e-22 107.5 132 49.2
CiPaw.09G098300 Carya illinoinensis HOM05D000147 ORTHO05D005950 7.6e-22 107.5 129 47.3
Ciclev10014675m.g Citrus clementina HOM05D000147 ORTHO05D005950 1.0e-21 107.1 133 46.6
Phvul.006G145500 Phaseolus vulgaris HOM05D000147 ORTHO05D005950 1.3e-21 106.7 135 43.7
Lalb_Chr15g0087801 Lupinus albus HOM05D000147 ORTHO05D005950 2.2e-21 105.9 132 45.5
TWI38G0618 Tripterygium wilfordii HOM05D000147 ORTHO05D005950 2.9e-21 105.5 133 47.4
Lj6g0003893 Lotus japonicus HOM05D000147 ORTHO05D005950 5.0e-21 104.8 134 42.5
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 6.5e-21 104.4 140 47.9
Hma1.2p1_0298F.1_g117450 Hydrangea macrophylla HOM05D000147 ORTHO05D005950 2.5e-20 102.4 132 46.2
Eucgr.E03984 Eucalyptus grandis HOM05D000147 ORTHO05D005950 3.2e-20 102.1 134 45.5
Thecc.06G228500 Theobroma cacao HOM05D000147 ORTHO05D005950 3.2e-20 102.1 129 48.8
Manes.16G002800 Manihot esculenta HOM05D000147 ORTHO05D005950 4.2e-20 101.7 129 47.3
Actinidia02343 Actinidia chinensis HOM05D000070 ORTHO05D005950 1.6e-19 99.8 128 46.9
Sabra04G0002200 Salix brachista HOM05D000147 ORTHO05D005950 1.6e-19 99.8 132 44.7
TAR627G0320 Trochodendron aralioides HOM05D000147 ORTHO05D005950 1.6e-19 99.8 133 43.6
Oeu002750.1 Olea europaea HOM05D000070 ORTHO05D005950 2.1e-19 99.4 128 46.1
Potri.004G004000 Populus trichocarpa HOM05D000147 ORTHO05D005950 3.6e-19 98.6 132 43.9
Nitab4.5_0000005g0030 Nicotiana tabacum HOM05D000070 ORTHO05D005950 6.1e-19 97.8 132 42.4
Nitab4.5_0005882g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005950 6.1e-19 97.8 132 42.4
Hund23430 Selenicereus undatus HOM05D000147 ORTHO05D005950 6.1e-19 97.8 132 47.0
MBI02_g15375_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D005950 1.0e-18 97.1 141 46.1
MSTRG.7181 Avicennia marina HOM05D000070 ORTHO05D005950 2.3e-18 95.9 132 45.5
GSVIVG01004817001 Vitis vinifera HOM05D000070 ORTHO05D005950 2.3e-18 95.9 134 46.3
TAR627G0645 Trochodendron aralioides HOM05D000147 ORTHO05D005950 6.7e-18 94.4 132 42.4
EL10Ac8g20131 Beta vulgaris HOM05D000147 ORTHO05D005950 1.1e-17 93.6 128 42.2
Rhsim13G0150000 Rhododendron simsii HOM05D000147 ORTHO05D005950 1.1e-17 93.6 132 45.5
Sc24g0000260 Simmondsia chinensis HOM05D000147 ORTHO05D005950 1.9e-17 92.8 134 42.5
Lsat_1_v5_gn_7_14900 Lactuca sativa HOM05D000147 ORTHO05D005950 2.5e-17 92.4 115 46.1
Aqoxy1G02947 Aquilegia oxysepala HOM05D000147 ORTHO05D005950 9.7e-17 90.5 132 40.9
Duzib235G0285 Durio zibethinus HOM05D000070 ORTHO05D005950 1.3e-16 90.1 128 42.2
AUR62021899 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.7e-16 89.7 129 42.6
Cc09_g01170 Coffea canephora HOM05D000070 ORTHO05D005950 1.7e-16 89.7 132 42.4
Gohir.A06G151300 Gossypium hirsutum HOM05D000070 ORTHO05D005950 1.7e-16 89.7 129 45.0
CANSAT56G0204 Cannabis sativa HOM05D000070 ORTHO05D005950 2.2e-16 89.4 132 43.2
AUR62012759 Chenopodium quinoa HOM05D000147 ORTHO05D005950 4.8e-16 88.2 129 41.9
CAN.G23.7 Capsicum annuum HOM05D000070 ORTHO05D005950 6.3e-16 87.8 132 39.4
Lj1C1236T15 Lonicera japonica HOM05D000147 ORTHO05D005950 6.3e-16 87.8 134 42.5
Carub.0006s3209 Capsella rubella HOM05D000147 ORTHO05D005950 8.2e-16 87.4 124 45.2
PSO541G0930 Papaver somniferum HOM05D000147 ORTHO05D005950 8.2e-16 87.4 136 39.7
ECA236G4610 Erigeron canadensis HOM05D002056 ORTHO05D005950 1.1e-15 87.0 114 43.0
Migut.M01369 Erythranthe guttata HOM05D000147 ORTHO05D005950 1.1e-15 87.0 132 42.4
Gorai.010G184000 Gossypium raimondii HOM05D000147 ORTHO05D005950 1.1e-15 87.0 129 44.2
vmacro03663 Vaccinium macrocarpon HOM05D000147 ORTHO05D005950 1.1e-15 87.0 136 42.6
FAN21G3947 Fragaria x ananassa HOM05D000147 ORTHO05D005950 1.4e-15 86.7 122 42.6
Gohir.D06G157500 Gossypium hirsutum HOM05D000070 ORTHO05D005950 1.4e-15 86.7 129 44.2
Nn1g07278 Nelumbo nucifera HOM05D000147 ORTHO05D005950 1.4e-15 86.7 141 41.1
AT4G04180 Arabidopsis thaliana HOM05D000147 ORTHO05D005950 1.8e-15 86.3 124 44.4
Duzib160G0363 Durio zibethinus HOM05D002056 ORTHO05D005950 3.1e-15 85.5 125 42.4
Sp6g04620 Schrenkiella parvula HOM05D000070 ORTHO05D005950 4.1e-15 85.1 110 47.3
BcaC04g21269 Brassica carinata HOM05D000147 ORTHO05D005950 6.9e-15 84.3 126 42.1
BcaC04g21279 Brassica carinata HOM05D000147 ORTHO05D005950 6.9e-15 84.3 126 42.1
BraA09t38218Z Brassica rapa HOM05D000147 ORTHO05D005950 6.9e-15 84.3 125 43.2
AL6G47800 Arabidopsis lyrata HOM05D000070 ORTHO05D005950 9.1e-15 84.0 124 43.5
A09p26440 Brassica napus HOM05D000147 ORTHO05D005950 9.1e-15 84.0 125 43.2
C09p33620 Brassica napus HOM05D000147 ORTHO05D005950 9.1e-15 84.0 125 42.4
BolC9t56196H Brassica oleracea HOM05D000147 ORTHO05D005950 9.1e-15 84.0 125 42.4
HanXRQChr15g0470791 Helianthus annuus HOM05D000147 ORTHO05D005950 1.2e-14 83.6 132 40.9
SalBow8G0879 Salvia bowleyana HOM05D000070 ORTHO05D005950 1.2e-14 83.6 133 38.3
unitig_748.g7944 Utricularia gibba HOM05D000070 ORTHO05D005950 1.5e-14 83.2 132 40.9
SGA_v2.0_scaffold7G03784 Striga asiatica HOM05D000070 ORTHO05D005950 2.0e-14 82.8 132 40.2
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.6e-14 82.4 125 41.6
BcaB01g01796 Brassica carinata HOM05D000147 ORTHO05D005950 4.5e-14 81.6 124 41.9
PSO675G5655 Papaver somniferum HOM05D000147 ORTHO05D005950 5.9e-14 81.3 136 39.7
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 7.7e-14 80.9 123 42.3
DCAR_024984 Daucus carota HOM05D000147 ORTHO05D005950 1.0e-13 80.5 133 40.6
CARHR253340 Cardamine hirsuta HOM05D000147 ORTHO05D005950 1.7e-13 79.7 110 44.5
THA.LOC104813427 Tarenaya hassleriana HOM05D000147 ORTHO05D005950 3.8e-13 78.6 132 40.9
Thhalv10028536m.g Eutrema salsugineum HOM05D000070 ORTHO05D005950 5.0e-13 78.2 124 39.5
BcaC09g49931 Brassica carinata HOM05D000147 ORTHO05D005950 1.4e-12 76.6 125 40.0
C01p31100 Brassica napus HOM05D000147 ORTHO05D005950 1.4e-12 76.6 125 40.0
Peaxi162Scf00294g00915 Petunia axillaris HOM05D000147 ORTHO05D005950 2.5e-12 75.9 132 37.1
Zm00001eb254090 Zea mays HOM05D000070 ORTHO05D005950 4.2e-12 75.1 113 43.4
RcHm_v2.0_Chr5g0002061 Rosa chinensis HOM05D000147 ORTHO05D005950 7.2e-12 74.3 63 69.8
CDE07G0653 Ceratophyllum demersum HOM05D000147 ORTHO05D005950 1.6e-11 73.2 139 37.4
Solyc02g036330.3 Solanum lycopersicum HOM05D000070 ORTHO05D005950 1.6e-11 73.2 132 37.9
Sopen02g011700 Solanum pennellii HOM05D000070 ORTHO05D005950 4.7e-11 71.6 132 37.1
ATR1149G150 Amborella trichopoda HOM05D000147 ORTHO05D005950 7.9e-11 70.9 134 36.6
Os02g0740300 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D005950 1.8e-10 69.7 145 35.9
AUR62017523 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.5e-09 66.6 97 41.2
FAN25G1544 Fragaria x ananassa HOM05D000147 ORTHO05D005950 5.7e-09 64.7 38 71.1
DCAR_023867 Daucus carota HOM05D000560 ORTHO05D005950 1.1e-07 60.5 106 39.6
SHI02238 Sapria himalayana HOM05D000147 ORTHO05D005950 3.1e-07 58.9 91 42.9
AUR62015275 Chenopodium quinoa HOM05D000147 ORTHO05D005950 9.1e-07 57.4 122 32.0
HPP92_018026 Vanilla planifolia HOM05D000147 ORTHO05D005950 7.7e-06 54.3 122 35.2


User provided reference genes

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