Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 6.0e-49 197.2 100 100.0
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 6.0e-49 197.2 100 100.0
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.9e-43 177.6 100 93.0
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 6.4e-35 150.6 100 77.0
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 6.6e-32 140.6 74 97.3
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 2.0e-28 129.0 70 94.3
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 3.1e-21 105.1 106 58.5
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 2.6e-20 102.1 95 62.1
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 5.8e-20 100.9 95 63.2
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 1.7e-19 99.4 92 58.7
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 1.9e-18 95.9 101 55.4
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 2.4e-18 95.5 94 56.4
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 9.3e-18 93.6 96 57.3
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 2.7e-17 92.0 97 56.7
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 2.7e-17 92.0 106 51.9
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 4.6e-17 91.3 100 55.0
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 6.0e-17 90.9 101 51.5
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 1.8e-16 89.4 91 52.7
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 3.0e-16 88.6 93 57.0
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 3.9e-16 88.2 96 51.0
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 5.1e-16 87.8 101 54.5
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 5.1e-16 87.8 100 52.0
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 6.7e-16 87.4 100 53.0
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 8.7e-16 87.0 97 54.6
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 1.5e-15 86.3 99 52.5
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 1.5e-15 86.3 99 47.5
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 1.9e-15 85.9 97 51.5
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 2.5e-15 85.5 96 53.1
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 7.4e-15 84.0 99 45.5
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 9.6e-15 83.6 99 51.5
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 9.6e-15 83.6 93 53.8
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 9.6e-15 83.6 96 50.0
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 1.6e-14 82.8 91 52.7
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 1.6e-14 82.8 101 47.5
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 3.7e-14 81.6 91 51.6
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 4.8e-14 81.3 102 44.1
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 6.2e-14 80.9 102 48.0
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 6.2e-14 80.9 108 49.1
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 6.2e-14 80.9 102 48.0
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 1.1e-13 80.1 102 46.1
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 1.1e-13 80.1 91 51.6
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 1.4e-13 79.7 98 46.9
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 2.4e-13 79.0 91 51.6
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 2.4e-13 79.0 91 56.0
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.4e-13 79.0 100 48.0
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 2.4e-13 79.0 60 71.7
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 3.1e-13 78.6 95 50.5
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 3.1e-13 78.6 80 55.0
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 4.0e-13 78.2 99 44.4
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 4.0e-13 78.2 79 53.2
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 5.3e-13 77.8 97 50.5
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 6.9e-13 77.4 103 51.5
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 9.0e-13 77.0 100 46.0
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 1.5e-12 76.3 98 49.0
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 1.5e-12 76.3 95 47.4
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 1.5e-12 76.3 110 44.5
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 2.0e-12 75.9 58 67.2
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 1.0e-11 73.6 93 43.0
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 2.9e-11 72.0 96 44.8
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 4.9e-11 71.2 89 48.3
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 4.9e-11 71.2 100 44.0
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 4.9e-11 71.2 61 63.9
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 1.2e-09 66.6 95 45.3
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 2.7e-09 65.5 87 42.5
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 1.3e-08 63.2 48 66.7
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 1.3e-08 63.2 58 60.3
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 3.9e-08 61.6 93 43.0
Haze_25223 Corylus avellana HOM05D008093 ORTHO05D009840 5.1e-08 61.2 70 52.9
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 8.7e-08 60.5 49 63.3
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 5.7e-07 57.8 53 58.5
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 1.3e-06 56.6 107 37.4
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 1.6e-06 56.2 47 59.6


User provided reference genes

Program Settings