Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.6e-247 857.8 437 100.0
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.6e-218 762.7 406 95.8
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 6.6e-201 704.1 369 98.1
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.3e-200 700.7 369 97.8
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 4.4e-197 691.4 372 96.2
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.7e-177 626.3 378 86.8
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 1.1e-155 553.9 379 77.6
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 4.8e-151 538.5 379 76.5
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 5.7e-136 488.4 374 72.7
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.4e-134 483.8 385 70.9
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.1e-131 474.2 397 68.5
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.6e-130 469.2 397 67.8
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 6.1e-130 468.4 370 68.9
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.3e-129 466.5 382 69.4
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 6.7e-129 464.9 371 70.4
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 3.7e-127 459.1 371 69.8
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 1.4e-126 457.2 370 68.1
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 1.4e-126 457.2 385 67.3
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.4e-126 457.2 372 69.1
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 1.3e-124 450.7 381 67.7
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.3e-124 450.7 380 67.1
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.7e-124 450.3 370 66.5
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.8e-124 449.1 379 65.4
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 6.5e-124 448.4 378 66.9
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 5.5e-123 445.3 368 65.2
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 4.7e-122 442.2 376 66.5
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 4.7e-122 442.2 371 67.4
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.1e-122 441.8 376 66.0
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 8.8e-121 438.0 374 65.0
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 2.0e-120 436.8 379 64.6
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 3.3e-120 436.0 378 67.7
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 5.7e-120 435.3 363 66.9
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 8.2e-119 431.4 385 63.6
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.4e-118 430.6 385 63.6
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.8e-118 430.3 373 64.3
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 5.3e-118 428.7 379 63.6
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.5e-117 427.2 385 62.9
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 1.5e-117 427.2 367 64.3
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 4.5e-117 425.6 369 64.0
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 5.9e-117 425.2 369 64.0
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 5.9e-117 425.2 376 63.6
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 6.5e-116 421.8 371 64.7
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 1.5e-115 420.6 384 63.5
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 5.5e-115 418.7 382 63.9
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 9.4e-115 417.9 390 61.8
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 1.4e-113 414.1 390 61.3
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 3.9e-113 412.5 386 62.2
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 5.2e-113 412.1 366 64.5
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 8.8e-113 411.4 390 61.0
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 1.5e-112 410.6 390 61.3
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 3.3e-112 409.5 390 61.8
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 9.7e-112 407.9 378 61.1
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.3e-111 407.5 373 62.2
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 4.8e-111 405.6 366 64.2
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 6.3e-111 405.2 367 62.4
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.1e-110 404.4 380 62.6
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 1.1e-110 404.4 380 61.8
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 7.0e-110 401.7 370 64.3
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.6e-109 400.6 380 60.5
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.6e-109 400.6 366 63.4
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 2.0e-109 400.2 370 60.3
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 2.6e-109 399.8 385 62.3
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 1.0e-108 397.9 366 60.9
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 1.3e-108 397.5 366 62.3
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.7e-108 397.1 366 62.8
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.7e-108 397.1 366 62.8
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 1.1e-107 394.4 379 60.2
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 1.1e-107 394.4 393 58.3
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.2e-106 391.0 393 57.8
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 1.5e-104 384.0 334 65.3
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 2.6e-104 383.3 392 58.7
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 5.7e-104 382.1 378 59.0
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.8e-102 377.1 386 57.8
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 1.7e-100 370.5 386 56.7
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 2.2e-100 370.2 376 58.8
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 2.9e-100 369.8 376 59.0
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 3.8e-100 369.4 377 56.0
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.5e-99 366.7 342 61.4
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 2.7e-98 363.2 342 63.5
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 6.8e-97 358.6 366 60.1
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 1.2e-96 357.8 374 56.4
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 5.7e-96 355.5 368 57.1
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 2.2e-95 353.6 378 57.1
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 8.3e-95 351.7 371 57.7
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 1.1e-94 351.3 367 57.5
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 1.1e-94 351.3 371 57.1
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 1.8e-94 350.5 375 57.9
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 1.2e-93 347.8 352 60.5
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 1.2e-93 347.8 352 60.5
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 2.7e-93 346.7 369 55.6
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 3.5e-93 346.3 371 56.3
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 4.5e-93 345.9 372 57.3
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 4.5e-93 345.9 371 56.3
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 4.5e-93 345.9 372 57.3
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 7.7e-93 345.1 372 57.0
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 1.7e-92 344.0 371 56.3
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 2.3e-92 343.6 372 56.7
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 2.3e-92 343.6 369 55.3
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 2.9e-92 343.2 372 56.7
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 6.6e-92 342.0 371 56.1
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 2.5e-91 340.1 372 54.8
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 2.5e-91 340.1 368 54.6
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 5.5e-91 339.0 275 68.4
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 7.2e-91 338.6 371 55.8
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 2.8e-90 336.7 366 56.8
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 4.0e-89 332.8 375 54.7
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 1.7e-87 327.4 371 54.7
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 1.1e-86 324.7 358 53.1
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 1.1e-83 314.7 393 50.4
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 6.8e-81 305.4 383 49.9
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 3.2e-78 296.6 301 53.5
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 7.0e-78 295.4 364 52.2
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 3.5e-77 293.1 394 48.2
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 5.0e-76 289.3 317 51.7
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 7.3e-75 285.4 319 53.0
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 7.3e-75 285.4 280 58.6
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.2e-66 258.1 253 54.9
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 6.8e-65 252.3 169 74.6
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 2.7e-61 240.4 355 42.5
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.1e-54 218.4 287 49.8
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.4e-54 217.2 287 49.5
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 9.9e-48 195.3 350 42.9
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 6.0e-45 186.0 208 56.2
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 1.3e-42 178.3 217 51.2
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 2.8e-42 177.2 202 54.5
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 4.5e-32 143.3 380 32.1
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.7e-29 134.0 136 64.0
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.0e-28 132.1 128 56.2
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 1.3e-28 131.7 277 33.9
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 3.0e-28 130.6 82 78.0
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.1e-27 128.6 169 49.7
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 6.3e-26 122.9 83 73.5
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 2.6e-24 117.5 164 50.6
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 5.1e-20 103.2 119 52.1
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 7.7e-16 89.4 93 49.5
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 1.1e-14 85.5 211 27.0
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.0e-12 79.0 109 43.1
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 2.0e-08 64.7 243 27.2
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 5.9e-08 63.2 75 53.3
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 7.7e-08 62.8 38 71.1
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 6.5e-07 59.7 48 70.8
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 6.5e-07 59.7 81 39.5


User provided reference genes

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