Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1014 Fragaria x ananassa HOM05D007038 ORTHO05D008893 2.4e-173 612.1 314 100.0
FvH4_1g00730 Fragaria vesca HOM05D007038 ORTHO05D008893 6.9e-152 540.8 364 80.5
FAN28G0561 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.4e-151 538.5 385 76.6
FAN23G2273 Fragaria x ananassa HOM05D007038 ORTHO05D008893 7.1e-149 530.8 390 75.4
FAN23G1724 Fragaria x ananassa HOM05D007038 ORTHO05D008893 3.5e-148 528.5 395 74.9
RcHm_v2.0_Chr2g0085451 Rosa chinensis HOM05D007038 ORTHO05D008893 5.3e-144 514.6 367 75.7
MD15G1150700 Malus domestica HOM05D007038 ORTHO05D008893 3.8e-118 428.7 373 63.5
Prupe.7G265000 Prunus persica HOM05D007038 ORTHO05D008893 3.2e-117 425.6 373 62.5
QL02p093776 Quercus lobata HOM05D007038 ORTHO05D008893 7.2e-109 397.9 368 60.1
Cfa020806 Carpinus fangiana HOM05D007038 ORTHO05D008893 7.5e-106 387.9 365 58.9
CiPaw.16G107900 Carya illinoinensis HOM05D007038 ORTHO05D008893 4.1e-104 382.1 368 58.2
Manes.06G033300 Manihot esculenta HOM05D007038 ORTHO05D008893 9.1e-104 380.9 359 57.7
Atru.chr7.996 Acer truncatum HOM05D007038 ORTHO05D008893 7.5e-98 361.3 360 56.4
Medtr4g130580 Medicago truncatula HOM05D007038 ORTHO05D008893 3.7e-97 359.0 373 53.6
GSVIVG01023636001 Vitis vinifera HOM05D007038 ORTHO05D008893 3.2e-96 355.9 358 54.2
Dinv42838 Davidia involucrata HOM05D007038 ORTHO05D008893 1.2e-95 354.0 368 54.3
TPR.G24832 Trifolium pratense HOM05D007038 ORTHO05D008893 3.9e-94 349.0 366 53.3
TWI63G0746 Tripterygium wilfordii HOM05D007038 ORTHO05D008893 3.9e-94 349.0 360 54.7
arahy.Tifrunner.gnm1.ann1.2821YK Arachis hypogaea HOM05D007038 ORTHO05D008893 8.6e-94 347.8 362 53.6
arahy.Tifrunner.gnm1.ann1.ULM9BE Arachis hypogaea HOM05D007038 ORTHO05D008893 8.6e-94 347.8 362 53.9
Lj4g0021787 Lotus japonicus HOM05D007038 ORTHO05D008893 1.5e-93 347.1 367 53.7
CSS0015539 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 1.2e-92 344.0 371 53.9
Glyma.02G205400 Glycine max HOM05D007038 ORTHO05D008893 2.8e-92 342.8 364 52.7
CANSAT11G2324 Cannabis sativa HOM05D007038 ORTHO05D008893 4.7e-92 342.0 345 54.5
Gorai.013G241400 Gossypium raimondii HOM05D007038 ORTHO05D008893 2.0e-90 336.7 357 52.1
VMungo1215G2991 Vigna mungo HOM05D007038 ORTHO05D008893 2.0e-90 336.7 364 52.5
Lalb_Chr13g0300771 Lupinus albus HOM05D007038 ORTHO05D008893 2.6e-90 336.3 362 53.3
Dinv43261 Davidia involucrata HOM05D007038 ORTHO05D008893 3.4e-90 335.9 355 54.1
Glyma.17G072600 Glycine max HOM05D007038 ORTHO05D008893 4.4e-90 335.5 365 53.2
CSS0013222 Camellia sinensis var. sinensis HOM05D007038 ORTHO05D008893 5.8e-90 335.1 370 53.0
Actinidia23561 Actinidia chinensis HOM05D007038 ORTHO05D008893 9.8e-90 334.3 378 52.6
Gohir.A13G206700 Gossypium hirsutum HOM05D007038 ORTHO05D008893 6.4e-89 331.6 357 51.5
Lj9A719G52 Lonicera japonica HOM05D007038 ORTHO05D008893 1.4e-88 330.5 366 54.4
TAR626G0465 Trochodendron aralioides HOM05D007038 ORTHO05D008893 1.2e-87 327.4 360 51.9
C02p13780 Brassica napus HOM05D007038 ORTHO05D008893 1.6e-87 327.0 360 49.7
BolC2t07497H Brassica oleracea HOM05D007038 ORTHO05D008893 1.6e-87 327.0 360 49.7
Psat0s3930g0120 Pisum sativum HOM05D007038 ORTHO05D008893 2.3e-86 323.2 343 53.4
Thhalv10015603m.g Eutrema salsugineum HOM05D007038 ORTHO05D008893 3.0e-86 322.8 361 49.6
PGR102G3121 Punica granatum HOM05D007038 ORTHO05D008893 6.6e-86 321.6 380 48.2
Sed0007561 Sechium edule HOM05D007038 ORTHO05D008893 8.6e-86 321.2 366 50.0
Sabra06G0139000 Salix brachista HOM05D007038 ORTHO05D008893 1.2e-84 317.4 459 42.0
CARHR271660 Cardamine hirsuta HOM05D007038 ORTHO05D008893 1.4e-83 313.9 376 48.7
AL8G33930 Arabidopsis lyrata HOM05D007038 ORTHO05D008893 6.8e-83 311.6 367 48.5
THA.LOC104811831 Tarenaya hassleriana HOM05D007038 ORTHO05D008893 2.0e-82 310.1 368 48.6
Lsat_1_v5_gn_5_89520 Lactuca sativa HOM05D007038 ORTHO05D008893 2.6e-82 309.7 387 48.3
Nn8g39966 Nelumbo nucifera HOM05D007038 ORTHO05D008893 4.4e-82 308.9 362 50.8
Carub.0008s1841 Capsella rubella HOM05D007038 ORTHO05D008893 7.5e-82 308.1 370 48.1
Sopen07g001900 Solanum pennellii HOM05D007038 ORTHO05D008893 1.7e-81 307.0 402 44.5
ECA234G0501 Erigeron canadensis HOM05D007038 ORTHO05D008893 4.9e-81 305.4 363 50.7
Eucgr.C02504 Eucalyptus grandis HOM05D007038 ORTHO05D008893 3.2e-80 302.8 364 48.9
AT5G57880 Arabidopsis thaliana HOM05D007038 ORTHO05D008893 1.2e-79 300.8 367 48.5
Cpa.g.sc46.174 Carica papaya HOM05D007038 ORTHO05D008893 3.5e-79 299.3 365 48.2
Duzib150G1077 Durio zibethinus HOM05D007038 ORTHO05D008893 1.0e-78 297.7 332 51.8
Migut.J01371 Erythranthe guttata HOM05D007038 ORTHO05D008893 5.1e-78 295.4 334 49.7
A10p15240 Brassica napus HOM05D007038 ORTHO05D008893 1.9e-77 293.5 397 44.8
PGSC0003DMG400011195 Solanum tuberosum HOM05D007038 ORTHO05D008893 3.3e-77 292.7 420 43.1
Sc14g0000940 Simmondsia chinensis HOM05D007038 ORTHO05D008893 7.3e-77 291.6 360 46.1
Aqoxy7G03364 Aquilegia oxysepala HOM05D007038 ORTHO05D008893 1.2e-76 290.8 352 47.7
ClCG02G014390 Citrullus lanatus HOM05D007038 ORTHO05D008893 2.8e-76 289.7 396 44.7
Rhsim03G0258100 Rhododendron simsii HOM05D007038 ORTHO05D008893 4.7e-76 288.9 418 43.8
BcaB05g22382 Brassica carinata HOM05D007038 ORTHO05D008893 8.1e-76 288.1 377 45.6
Haze_19163 Corylus avellana HOM05D007038 ORTHO05D008893 2.3e-75 286.6 400 45.5
HanXRQChr16g0520471 Helianthus annuus HOM05D007038 ORTHO05D008893 4.4e-74 282.3 427 43.3
Aa31LG3G13710 Aethionema arabicum HOM05D007038 ORTHO05D008893 3.7e-73 279.3 369 44.4
EL10Ac8g18937 Beta vulgaris HOM05D007038 ORTHO05D008893 3.7e-73 279.3 369 45.0
BcaC04g19921 Brassica carinata HOM05D007038 ORTHO05D008893 3.7e-73 279.3 416 43.0
A02p08130 Brassica napus HOM05D007038 ORTHO05D008893 4.9e-73 278.9 360 45.0
BraA02t05887Z Brassica rapa HOM05D007038 ORTHO05D008893 1.1e-72 277.7 359 44.8
BraA10t43606Z Brassica rapa HOM05D007038 ORTHO05D008893 4.1e-72 275.8 390 43.6
C09p49760 Brassica napus HOM05D007038 ORTHO05D008893 7.1e-72 275.0 373 44.5
SalBow1G2783 Salvia bowleyana HOM05D007038 ORTHO05D008893 9.2e-72 274.6 342 47.7
PSO063G4531 Papaver somniferum HOM05D007038 ORTHO05D008893 1.6e-71 273.9 364 44.8
Phvul.003G155000 Phaseolus vulgaris HOM05D007038 ORTHO05D008893 3.9e-70 269.2 304 50.7
DCAR_019405 Daucus carota HOM05D007038 ORTHO05D008893 5.1e-70 268.9 316 46.8
Nitab4.5_0002724g0040 Nicotiana tabacum HOM05D007038 ORTHO05D008893 1.9e-69 266.9 402 40.5
Hund08926 Selenicereus undatus HOM05D007038 ORTHO05D008893 2.8e-68 263.1 389 42.4
Ciclev10009099m.g Citrus clementina HOM05D007038 ORTHO05D008893 8.9e-67 258.1 290 52.1
BolC9t57827H Brassica oleracea HOM05D007038 ORTHO05D008893 1.5e-66 257.3 425 39.3
Ca_21139_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 4.6e-63 245.7 285 51.6
Ca_21144_v3 Cicer arietinum L. HOM05D007038 ORTHO05D008893 4.6e-63 245.7 285 51.6
Thecc.09G151200 Theobroma cacao HOM05D007038 ORTHO05D008893 2.1e-60 236.9 274 48.9
HanXRQChr16g0520451 Helianthus annuus HOM05D007038 ORTHO05D008893 2.4e-59 233.4 344 43.0
SGA_v2.0_scaffold265G46092 Striga asiatica HOM05D007038 ORTHO05D008893 5.3e-59 232.3 295 46.4
Gohir.D13G211300 Gossypium hirsutum HOM05D007038 ORTHO05D008893 1.2e-58 231.1 229 54.1
ATR0019G005 Amborella trichopoda HOM05D007038 ORTHO05D008893 2.6e-58 229.9 371 39.4
Cc06_g14750 Coffea canephora HOM05D007038 ORTHO05D008893 4.4e-58 229.2 324 42.0
MBI14_g09472_MAGBIO Magnolia biondii HOM05D007038 ORTHO05D008893 3.2e-56 223.0 319 42.0
Os08g0555800 Oryza sativa ssp. japonica HOM05D007038 ORTHO05D008893 3.2e-56 223.0 363 39.7
Potri.006G182301 Populus trichocarpa HOM05D007038 ORTHO05D008893 1.6e-55 220.7 175 62.3
vmacro06062 Vaccinium macrocarpon HOM05D007038 ORTHO05D008893 2.3e-54 216.9 353 39.4
Zm00001eb180360 Zea mays HOM05D007038 ORTHO05D008893 1.2e-50 204.5 364 37.4
Solyc07g005790.4 Solanum lycopersicum HOM05D007038 ORTHO05D008893 4.3e-45 186.0 139 61.9
AUR62025344 Chenopodium quinoa HOM05D007038 ORTHO05D008893 5.6e-45 185.7 305 40.3
Nitab4.5_0002320g0050 Nicotiana tabacum HOM05D001418 ORTHO05D002038 2.8e-44 183.3 385 34.8
AUR62028347 Chenopodium quinoa HOM05D007038 ORTHO05D008893 8.1e-44 181.8 312 40.4
Peaxi162Scf00401g00327 Petunia axillaris HOM05D007038 ORTHO05D008893 3.1e-43 179.9 144 61.8
CAN.G160.33 Capsicum annuum HOM05D007038 ORTHO05D008893 1.9e-40 170.6 139 58.3
Peaxi162Scf00401g00326 Petunia axillaris HOM05D007038 ORTHO05D008893 3.3e-37 159.8 182 50.5
Solyc07g005800.2 Solanum lycopersicum HOM05D007038 ORTHO05D008893 3.3e-37 159.8 172 51.7
unitig_46.g18476 Utricularia gibba HOM05D007038 ORTHO05D008893 6.9e-35 152.1 251 37.1
Potri.006G182201 Populus trichocarpa HOM05D007038 ORTHO05D008893 9.0e-35 151.8 128 63.3
CsaV3_2G007610 Cucumis sativus L. HOM05D007038 ORTHO05D008893 4.8e-28 129.4 232 38.8
Hma1.2p1_0222F.1_g093710 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 3.8e-25 119.8 91 68.1
Hma1.2p1_0222F.1_g093742 Hydrangea macrophylla HOM05D007038 ORTHO05D008893 3.8e-25 119.8 91 68.1
SHI02845 Sapria himalayana HOM05D007038 ORTHO05D008893 3.6e-23 113.2 135 50.4
CDE05G1617 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 1.1e-19 101.7 148 40.5
CDE02G0638 Ceratophyllum demersum HOM05D007038 ORTHO05D008893 1.4e-19 101.3 145 43.4
PSO782G2459 Papaver somniferum HOM05D007038 ORTHO05D008893 7.9e-15 85.5 90 52.2
Pp3c7_6690 Physcomitrium patens HOM05D007038 ORTHO05D008893 3.0e-14 83.6 333 23.7
Ah.14g084570 Amaranthus hybridus HOM05D007038 ORTHO05D008893 5.0e-09 66.2 61 55.7
HPP92_020432 Vanilla planifolia HOM05D000367 ORTHO05D008893 5.5e-08 62.8 127 37.0


User provided reference genes

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