Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.6e-95 352.1 177 100.0
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.8e-93 345.9 177 98.3
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 1.1e-90 336.7 178 96.1
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.1e-90 336.7 178 96.1
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 4.4e-87 324.7 177 93.2
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 4.4e-55 218.4 119 93.3
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 4.6e-44 181.8 174 58.6
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 1.0e-43 180.6 167 66.5
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 9.6e-42 174.1 167 59.3
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 5.8e-31 138.3 157 51.0
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 8.4e-30 134.4 162 46.9
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 1.4e-29 133.7 185 45.4
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 2.4e-29 132.9 184 47.3
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 5.4e-29 131.7 189 47.1
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 7.1e-29 131.3 188 45.7
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 9.3e-29 131.0 189 43.9
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 2.7e-28 129.4 189 46.0
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 7.9e-28 127.9 192 45.8
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 1.8e-27 126.7 202 48.0
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 3.9e-27 125.6 192 45.3
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 7.4e-26 121.3 143 48.3
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 7.4e-26 121.3 167 47.3
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.6e-25 120.2 194 43.3
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 2.1e-25 119.8 172 43.6
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 3.7e-25 119.0 154 43.5
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.4e-24 117.1 196 42.9
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 1.8e-24 116.7 183 45.4
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 1.8e-24 116.7 168 47.0
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.0e-24 115.5 196 42.9
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 9.0e-24 114.4 158 46.8
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 2.6e-23 112.8 156 43.6
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.4e-23 112.5 179 41.9
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 5.8e-23 111.7 180 42.2
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.0e-22 110.9 167 43.1
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.3e-22 110.5 174 41.4
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.3e-22 110.5 175 38.9
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 1.7e-22 110.2 152 43.4
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 2.2e-22 109.8 185 43.2
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.2e-22 109.8 160 43.8
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 1.4e-21 107.1 180 41.7
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 5.5e-21 105.1 162 43.8
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.2e-20 104.0 175 43.4
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 4.6e-20 102.1 142 43.7
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.0e-19 100.9 177 45.2
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 1.3e-19 100.5 172 40.7
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 3.0e-19 99.4 185 38.9
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.5e-18 97.1 151 42.4
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 2.5e-18 96.3 176 39.2
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 3.3e-18 95.9 193 35.8
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 3.3e-18 95.9 201 36.8
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 7.4e-18 94.7 178 41.6
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 9.6e-18 94.4 178 41.6
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 4.1e-16 89.0 185 37.8
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.2e-15 87.4 203 35.5
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 1.5e-15 87.0 154 40.9
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 2.0e-15 86.7 195 32.3
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 2.6e-15 86.3 164 36.6
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 2.6e-15 86.3 168 38.7
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 2.6e-15 86.3 208 35.1
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 2.6e-15 86.3 170 37.1
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 3.4e-15 85.9 160 36.9
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 3.4e-15 85.9 163 36.8
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 4.5e-15 85.5 194 33.5
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 5.8e-15 85.1 176 35.8
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 5.8e-15 85.1 190 36.3
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 7.6e-15 84.7 178 36.5
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 7.6e-15 84.7 160 39.4
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 7.6e-15 84.7 164 38.4
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.0e-14 84.3 203 34.5
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 1.7e-14 83.6 155 36.8
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 3.8e-14 82.4 161 40.4
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 1.1e-13 80.9 159 36.5
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 1.9e-13 80.1 178 35.4
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 2.5e-13 79.7 162 40.7
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 2.5e-13 79.7 201 33.8
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.5e-13 79.7 112 42.0
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 3.2e-13 79.3 210 32.9
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 4.2e-13 79.0 115 40.9
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 5.5e-13 78.6 165 37.6
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 7.2e-13 78.2 163 37.4
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 7.2e-13 78.2 176 38.1
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 1.2e-12 77.4 173 35.3
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 2.1e-12 76.6 76 56.6
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 3.5e-12 75.9 187 34.2
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 3.5e-12 75.9 176 35.8
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 6.1e-12 75.1 151 37.1
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 6.1e-12 75.1 166 32.5
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.0e-11 74.3 112 43.8
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 1.3e-11 73.9 174 34.5
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 3.0e-11 72.8 166 36.1
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 3.9e-11 72.4 156 38.5
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 5.1e-11 72.0 185 33.0
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 5.1e-11 72.0 164 36.0
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 6.7e-11 71.6 172 33.7
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 1.1e-10 70.9 167 33.5
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.1e-10 70.9 180 31.1
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 1.9e-10 70.1 97 44.3
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 2.5e-10 69.7 154 31.2
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 2.5e-10 69.7 170 34.1
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 3.3e-10 69.3 152 32.9
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 3.3e-10 69.3 152 32.9
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 4.3e-10 68.9 169 34.9
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 4.3e-10 68.9 114 41.2
Psat4g081120 Pisum sativum HOM05D005432 ORTHO05D004599 4.3e-10 68.9 78 48.7
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 7.4e-10 68.2 152 32.9
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 7.4e-10 68.2 152 32.9
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 1.3e-09 67.4 147 33.3
AUR62004024 Chenopodium quinoa HOM05D022777 ORTHO05D004599 1.3e-09 67.4 141 37.6
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 1.3e-09 67.4 64 51.6
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 1.6e-09 67.0 78 46.2
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 2.2e-09 66.6 150 35.3
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 2.2e-09 66.6 70 44.3
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 2.8e-09 66.2 167 33.5
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 2.8e-09 66.2 167 33.5
Eucgr.H02319 Eucalyptus grandis HOM05D005432 ORTHO05D004599 3.7e-09 65.9 139 35.3
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 3.7e-09 65.9 72 51.4
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 8.2e-09 64.7 194 30.4
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 8.2e-09 64.7 70 50.0
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 8.2e-09 64.7 156 35.3
Lsat_1_v5_gn_4_160281 Lactuca sativa HOM05D005432 ORTHO05D004599 1.1e-08 64.3 140 35.7
Psat4g081760 Pisum sativum HOM05D005432 ORTHO05D004599 1.1e-08 64.3 77 45.5
Ah.02g125350 Amaranthus hybridus HOM05D022777 ORTHO05D004599 1.4e-08 63.9 159 32.7
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 1.4e-08 63.9 53 54.7
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 1.4e-08 63.9 85 44.7
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 1.8e-08 63.5 80 45.0
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 2.4e-08 63.2 82 41.5
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 2.4e-08 63.2 54 48.1
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 2.4e-08 63.2 58 50.0
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 2.4e-08 63.2 187 31.6
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 4.1e-08 62.4 68 44.1
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 4.1e-08 62.4 73 43.8
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 5.3e-08 62.0 66 45.5
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 5.3e-08 62.0 148 28.4
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 6.9e-08 61.6 68 44.1
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 6.9e-08 61.6 73 43.8
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 6.9e-08 61.6 68 44.1
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 9.0e-08 61.2 54 48.1
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.2e-07 60.8 54 48.1
CARHR246100 Cardamine hirsuta HOM05D009364 ORTHO05D004599 2.0e-07 60.1 76 40.8
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 2.0e-07 60.1 61 52.5
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 2.0e-07 60.1 167 31.7
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 2.0e-07 60.1 55 50.9
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 2.0e-07 60.1 71 47.9
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 2.6e-07 59.7 52 46.2
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 2.6e-07 59.7 52 46.2
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 2.6e-07 59.7 90 42.2
Psat2g172120 Pisum sativum HOM05D005432 ORTHO05D004599 3.4e-07 59.3 71 49.3
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 4.5e-07 58.9 73 41.1
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 4.5e-07 58.9 51 47.1
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 4.5e-07 58.9 57 49.1
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 4.5e-07 58.9 71 43.7
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 5.9e-07 58.5 54 46.3
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 7.7e-07 58.2 74 39.2
PGR004G1176 Punica granatum HOM05D005432 ORTHO05D004599 1.0e-06 57.8 153 31.4
AT4G37710 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 1.3e-06 57.4 74 41.9
arahy.Tifrunner.gnm1.ann1.6CR1D2 Arachis hypogaea HOM05D005432 ORTHO05D004599 1.3e-06 57.4 51 51.0
ECA232G3481 Erigeron canadensis HOM05D005432 ORTHO05D004599 2.2e-06 56.6 182 28.6
BcaC06g33374 Brassica carinata HOM05D009364 ORTHO05D004599 2.9e-06 56.2 51 45.1
C07p62590 Brassica napus HOM05D009364 ORTHO05D004599 2.9e-06 56.2 51 45.1
BolC7t46674H Brassica oleracea HOM05D009364 ORTHO05D004599 2.9e-06 56.2 51 45.1
Aa31LG7G13930 Aethionema arabicum HOM05D009364 ORTHO05D004599 5.0e-06 55.5 65 43.1
arahy.Tifrunner.gnm1.ann1.0M6NCC Arachis hypogaea HOM05D005432 ORTHO05D004599 6.5e-06 55.1 54 46.3


User provided reference genes

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