Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 0.0e+00 1110.5 604 100.0
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.1e-291 1006.1 570 96.8
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-287 992.6 577 95.8
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.4e-286 987.3 586 93.5
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-284 982.6 577 95.0
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-273 944.9 559 91.6
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 9.0e-233 810.4 570 76.5
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 3.5e-229 798.5 562 76.7
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 4.6e-229 798.1 563 75.1
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.9e-222 776.2 563 75.8
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 4.6e-213 745.0 563 74.8
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.0e-212 742.3 563 74.6
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.2e-205 720.3 563 69.1
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 3.9e-204 715.3 562 68.0
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 3.7e-202 708.8 566 68.7
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 4.2e-198 695.3 578 67.1
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.1e-197 693.0 560 65.9
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 6.7e-196 688.0 557 67.5
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 4.4e-195 685.3 561 66.7
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.8e-193 679.9 558 65.1
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 3.1e-193 679.1 557 66.2
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.1e-193 679.1 558 67.0
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 4.1e-193 678.7 557 66.8
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 5.9e-192 674.9 566 62.5
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 7.7e-192 674.5 557 66.4
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 1.0e-191 674.1 562 64.2
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 5.5e-190 668.3 567 65.8
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 4.7e-189 665.2 557 65.9
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 2.3e-188 662.9 557 65.0
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 4.0e-188 662.1 566 64.7
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 8.8e-188 661.0 566 62.9
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 5.7e-187 658.3 558 63.4
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 2.8e-186 656.0 559 64.6
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 4.8e-186 655.2 559 63.7
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 6.3e-186 654.8 566 62.0
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.4e-185 653.7 562 62.6
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 2.7e-184 649.4 563 62.0
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.3e-183 647.1 559 63.1
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 2.2e-183 646.4 558 62.5
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 6.5e-183 644.8 579 59.8
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 6.5e-183 644.8 572 62.8
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 3.2e-182 642.5 562 61.4
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 5.5e-182 641.7 559 62.6
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 6.1e-181 638.3 565 61.4
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 3.4e-179 632.5 563 62.7
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.7e-178 630.2 561 61.7
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 8.3e-178 627.9 555 61.3
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 2.4e-177 626.3 561 60.4
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.4e-177 626.3 555 61.4
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 7.0e-177 624.8 555 61.1
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.2e-176 624.0 560 59.5
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.6e-176 623.6 560 59.5
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 2.7e-176 622.9 559 61.5
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 4.5e-176 622.1 556 60.6
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.7e-175 620.2 561 58.5
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 8.6e-175 617.8 559 60.3
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 3.3e-174 615.9 561 59.9
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 3.3e-174 615.9 566 60.2
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 2.1e-173 613.2 556 60.4
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 1.0e-172 610.9 560 58.8
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 6.8e-172 608.2 564 58.9
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 6.8e-172 608.2 561 59.0
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 2.0e-171 606.7 562 58.9
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 4.4e-171 605.5 568 59.9
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 5.7e-171 605.1 560 60.2
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 4.9e-170 602.1 556 59.0
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 4.9e-170 602.1 655 52.7
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 8.3e-170 601.3 562 57.8
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-169 600.9 505 66.5
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 4.5e-168 595.5 559 60.8
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.3e-167 594.0 560 58.4
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 5.0e-167 592.0 561 58.1
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.1e-166 590.9 556 60.1
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 3.3e-166 589.3 561 59.0
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.6e-165 587.0 573 58.5
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.1e-165 586.6 562 55.7
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 3.6e-165 585.9 563 59.9
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 3.6e-165 585.9 553 57.0
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 4.7e-165 585.5 562 57.1
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 1.4e-164 583.9 563 57.5
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.8e-164 583.6 586 57.2
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 2.3e-164 583.2 586 57.8
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.0e-164 582.8 499 69.9
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 3.4e-163 579.3 567 55.9
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 7.5e-163 578.2 559 56.7
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 2.0e-160 570.1 552 55.6
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 2.7e-160 569.7 570 56.1
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 3.5e-160 569.3 575 56.9
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 8.6e-159 564.7 565 57.9
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 1.2e-157 560.8 564 56.9
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.6e-157 560.5 554 52.9
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.1e-157 560.1 568 57.2
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 2.8e-157 559.7 561 57.2
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 2.8e-157 559.7 555 54.8
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 3.6e-157 559.3 568 57.2
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 3.6e-157 559.3 561 57.2
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 8.9e-156 554.7 570 55.4
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 2.6e-155 553.1 575 55.3
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 7.8e-152 541.6 567 54.1
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 1.2e-147 527.7 572 52.6
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 1.2e-144 517.7 582 51.7
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.8e-140 503.8 555 54.4
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-138 497.7 465 67.7
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 6.4e-138 495.4 551 48.6
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.3e-135 487.6 413 64.6
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.7e-135 487.3 446 59.2
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.1e-132 478.0 424 62.7
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 1.7e-127 460.7 559 49.0
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.8e-125 453.4 430 60.2
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 2.2e-122 443.7 557 45.2
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-120 438.0 486 60.7
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.8e-117 426.0 300 73.0
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 1.4e-116 424.5 561 45.3
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 2.0e-115 420.6 560 44.3
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 4.5e-115 419.5 281 76.9
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 6.0e-112 409.1 343 63.0
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 3.4e-107 393.3 562 41.8
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.0e-103 381.7 236 90.7
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 1.8e-100 370.9 564 41.0
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 2.4e-100 370.5 570 40.0
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 7.9e-96 355.5 387 54.8
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 1.6e-88 331.3 498 43.8
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 4.1e-84 316.6 223 75.3
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.6e-80 304.7 531 40.9
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 4.4e-78 296.6 308 54.2
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.8e-71 274.6 352 47.7
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.2e-67 261.9 173 73.4
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-67 261.5 289 59.5
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 1.0e-58 232.3 410 36.6
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.5e-57 227.6 158 72.8
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 8.0e-56 222.6 139 85.6
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 2.8e-53 214.2 139 81.3
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-48 196.8 119 88.2
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 5.2e-47 193.4 119 86.6
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-46 191.4 165 78.2
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-46 191.4 165 71.5
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.1e-44 185.7 140 67.9
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-41 174.5 172 73.3
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 5.2e-39 166.8 139 57.6
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-37 161.8 157 72.6
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-37 161.4 353 35.7
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-31 141.0 88 83.0
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 7.1e-28 129.8 90 77.8
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 4.7e-24 117.1 112 58.0
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-23 114.4 175 40.0
RcHm_v2.0_Chr1g0314551 Rosa chinensis HOM05D004469 ORTHO05D342664 3.2e-20 104.4 114 70.2
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.7e-19 101.3 102 47.1
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 1.2e-14 85.9 56 66.1
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 1.5e-14 85.5 70 64.3
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 3.4e-14 84.3 56 76.8
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-13 82.0 43 86.0
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-10 72.8 40 90.0
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-10 72.4 52 75.0
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 3.0e-10 71.2 61 59.0
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 3.3e-09 67.8 36 88.9
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.1e-08 65.1 46 67.4
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 2.4e-07 61.6 54 57.4
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 3.4e-06 57.8 40 65.0
RcHm_v2.0_Chr7g0226011 Rosa chinensis HOM05D004469 ORTHO05D345385 7.6e-06 56.6 35 82.9


User provided reference genes

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